RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SNX3O60493 162 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 SYNCRIPO60506 623 aaKnown RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 ZMPSTE24O75844 475 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 STK10O94804 968 aaKnown RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 CA4P22748 312 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 RPA3P35244 121 aaPredicted RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 TIE1P35590 1138 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 LIG3P49916 1009 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 SFSWAPQ12872 951 aaKnown RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 MTAPQ13126 283 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 SPARCL1Q14515 664 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 ZNF234Q14588 700 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 CRY1Q16526 586 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 PTPRNQ16849 979 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 HNRNPA1L2Q32P51 320 aaKnown RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 KBTBD12Q3ZCT8 623 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 ANKRD20A2Q5SQ80 823 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 ANKRD20A1Q5TYW2 823 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 ANKRD20A3Q5VUR7 823 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 SERPINA13PQ6UXR4 307 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 ZNF534Q76KX8 674 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 APCDD1Q8J025 514 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 TXNDC5Q8NBS9 432 aaKnown RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 SLC44A1Q8WWI5 657 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 PAIP2Q9BPZ3 127 aaKnown RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 FERMT1Q9BQL6 677 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 LRFN3Q9BTN0 628 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 SPON2Q9BUD6 331 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 RASSF4Q9H2L5 321 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 NOL6Q9H6R4 1146 aaKnown RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 XAB2Q9HCS7 855 aaKnown RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 PRMT8Q9NR22 394 aaPredicted RBP10.31□□□□□ -0.76
VPS53-202ENST00000389040 NDFIP2Q9NV92 336 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 EBF1Q9UH73 591 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 TTLL3Q9Y4R7 772 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 STON1Q9Y6Q2 735 aa10.31□□□□□ -0.76
VPS53-202ENST00000389040 TECTAO75443 2155 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 IQANK1A0A1B0GTG1 560 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 EDDM13A0A1B0GTR0 161 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 RNF103O00237 685 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 CBX4O00257 560 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 ZWINTO95229 277 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 KLF8O95600 359 aaPredicted RBP10.3□□□□□ -0.76
VPS53-202ENST00000389040 CPP00450 1065 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 INHBAP08476 426 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 TAC1P20366 129 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 FOXN2P32314 431 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 FDFT1P37268 417 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 ZBTB16Q05516 673 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 IL10RBQ08334 325 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 AP1B1Q10567 949 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 CAMK2GQ13555 558 aaPredicted RBP10.3□□□□□ -0.76
VPS53-202ENST00000389040 GAS6Q14393 721 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 FNDC3BQ53EP0 1204 aaKnown RBP10.3□□□□□ -0.76
VPS53-202ENST00000389040 EGFLAMQ63HQ2 1017 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 TIGD7Q6NT04 549 aaPredicted RBP10.3□□□□□ -0.76
VPS53-202ENST00000389040 OR52K2Q8NGK3 314 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 MRGPRX3Q96LB0 322 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 TSGA13Q96PP4 275 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 SPATA6Q9NWH7 488 aaPredicted RBP10.3□□□□□ -0.76
VPS53-202ENST00000389040 VPS51Q9UID3 782 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 HCN2Q9UL51 889 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 SCML1Q9UN30 329 aa10.3□□□□□ -0.76
VPS53-202ENST00000389040 CCT8L1PA6NM43 557 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 GALR2O43603 387 aaPredicted RBP10.29□□□□□ -0.76
VPS53-202ENST00000389040 PRAMEF11O60813 436 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 OPHN1O60890 802 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 FSBPO95073 299 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 APBB3O95704 486 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 C1QAP02745 245 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 GSTA2P09210 222 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 HOXB2P14652 356 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 SERPINH1P50454 418 aaKnown RBP10.29□□□□□ -0.76
VPS53-202ENST00000389040 PAPOLAP51003 745 aaKnown RBP10.29□□□□□ -0.76
VPS53-202ENST00000389040 SEC13P55735 322 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 SARNPP82979 210 aaKnown RBP10.29□□□□□ -0.76
VPS53-202ENST00000389040 GALNT2Q10471 571 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 ZKSCAN8Q15776 578 aaPredicted RBP10.29□□□□□ -0.76
VPS53-202ENST00000389040 DSG4Q86SJ6 1040 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 ARHGAP12Q8IWW6 846 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 PCDH20Q8N6Y1 951 aaKnown RBP10.29□□□□□ -0.76
VPS53-202ENST00000389040 NETO2Q8NC67 525 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 CCNYQ8ND76 341 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 NSMCE1Q8WV22 266 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 CCT6BQ92526 530 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 ALKBH8Q96BT7 664 aaKnown RBP10.29□□□□□ -0.76
VPS53-202ENST00000389040 HMCESQ96FZ2 354 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 MYO19Q96H55 970 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 LRIG1Q96JA1 1093 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 SLC39A8Q9C0K1 460 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 KDM4CQ9H3R0 1056 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 PLAC1Q9HBJ0 212 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 EIF2B3Q9NR50 452 aaKnown RBP10.29□□□□□ -0.76
VPS53-202ENST00000389040 COL4A3Q01955 1670 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 MTSS1O43312 755 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 ADAM23O75077 832 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 SUN1O94901 812 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 CES1P23141 567 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 PRKCHP24723 683 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 CCNCP24863 283 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms