RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 PHACTR4Q8IZ21 702 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 STK40Q8N2I9 435 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 CASP10Q92851 521 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 UPF1Q92900 1129 aaKnown RBP eCLIP13.27□□□□□ -0.29
NPHP4-203ENST00000378169 GATA5Q9BWX5 397 aaPredicted RBP13.27□□□□□ -0.29
NPHP4-203ENST00000378169 RMND5AQ9H871 391 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 ZNF395Q9H8N7 513 aaPredicted RBP13.27□□□□□ -0.29
NPHP4-203ENST00000378169 CNTN3Q9P232 1028 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 LNPEPQ9UIQ6 1025 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 MYH7P12883 1935 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 TTC24A2A3L6 582 aaPredicted RBP13.26□□□□□ -0.29
NPHP4-203ENST00000378169 F8W810 466 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 H0YGN5 161 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 MATN3O15232 486 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 USP1O94782 785 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 LINC00032P0C843 101 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 GRIA3P42263 894 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 TAS2R39P59534 338 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 CPSF6Q16630 551 aaKnown RBP eCLIP13.26□□□□□ -0.29
NPHP4-203ENST00000378169 AFTPHQ6ULP2 937 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 IRGQQ8WZA9 623 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 CDH19Q9H159 772 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 LIMD1Q9UGP4 676 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 NFS1Q9Y697 457 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 TRAV19A0A0A6YYK7 116 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 KANSL1LA0AUZ9 987 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 TBC1D3BA6NDS4 549 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 GSC2O15499 205 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 IRAK2O43187 625 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 ZBTB14O43829 449 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 INHAP05111 366 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 POLR2LP62875 67 aaKnown RBP13.26□□□□□ -0.29
NPHP4-203ENST00000378169 POU5F1Q01860 360 aaKnown RBP13.26□□□□□ -0.29
NPHP4-203ENST00000378169 RAB6CQ53S08 254 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 RD3Q7Z3Z2 195 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 RBM23Q86U06 439 aaKnown RBP13.26□□□□□ -0.29
NPHP4-203ENST00000378169 TBC1D19Q8N5T2 526 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 SELENOMQ8WWX9 145 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 NMD3Q96D46 503 aaKnown RBP13.26□□□□□ -0.29
NPHP4-203ENST00000378169 LINGO1Q96FE5 620 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 HBEGFQ99075 208 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 RAB6CQ9H0N0 254 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 ATP13A3Q9H7F0 1226 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 ZNF180Q9UJW8 692 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 CLDN11O75508 207 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 PSME3P61289 254 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 RPS24P62847 133 aaKnown RBP13.26□□□□□ -0.29
NPHP4-203ENST00000378169 PWP1Q13610 501 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 HECTD2Q5U5R9 776 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 ERAP2Q6P179 960 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 FBXL19Q6PCT2 694 aa13.26□□□□□ -0.29
NPHP4-203ENST00000378169 RTL3Q8N8U3 475 aaKnown RBP13.26□□□□□ -0.29
NPHP4-203ENST00000378169 TDRKHQ9Y2W6 561 aaKnown RBP13.26□□□□□ -0.29
NPHP4-203ENST00000378169 C9JVG2 144 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 CXCL14O95715 111 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 SNRPB2P08579 225 aaKnown RBP13.25□□□□□ -0.29
NPHP4-203ENST00000378169 CYP2A7P20853 494 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 DGKAP23743 735 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 PIK3R1P27986 724 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 CTNNB1P35222 781 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 RFX3P48380 749 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 ALDH9A1P49189 494 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 IRF8Q02556 426 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 PIGWQ7Z7B1 504 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 STK32CQ86UX6 486 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 HJURPQ8NCD3 748 aaPredicted RBP13.25□□□□□ -0.29
NPHP4-203ENST00000378169 DNAJC1Q96KC8 554 aaKnown RBP13.25□□□□□ -0.29
NPHP4-203ENST00000378169 LRMDAQ9H2I8 198 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 MRPS23Q9Y3D9 190 aaKnown RBP13.25□□□□□ -0.29
NPHP4-203ENST00000378169 DYRK1BQ9Y463 629 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 MYO7AQ13402 2215 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 A0A0U1RQF3 1178 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 XYLBO75191 536 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 IQCF3P0C7M6 154 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 HSPA13P48723 471 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 GLUD2P49448 558 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 GNA12Q03113 381 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 SOX4Q06945 474 aaPredicted RBP13.25□□□□□ -0.29
NPHP4-203ENST00000378169 GRAMD4Q6IC98 578 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 CUZD1Q86UP6 607 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 FIBCD1Q8N539 461 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 NPAS2Q99743 824 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 SMOQ99835 787 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 SLC25A51Q9H1U9 297 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 EVLQ9UI08 416 aaPredicted RBP13.25□□□□□ -0.29
NPHP4-203ENST00000378169 DOLKQ9UPQ8 538 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 TRAF6Q9Y4K3 522 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 ITGB4P16144 1822 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 ZNF839A8K0R7 811 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 RNASEH1O60930 286 aaKnown RBP13.25□□□□□ -0.29
NPHP4-203ENST00000378169 NTRK1P04629 796 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 ATP5BP06576 529 aaKnown RBP13.25□□□□□ -0.29
NPHP4-203ENST00000378169 GSSP48637 474 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 PIK3CGP48736 1102 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 YBEYP58557 167 aaPredicted RBP13.25□□□□□ -0.29
NPHP4-203ENST00000378169 KLF1Q13351 362 aaPredicted RBP13.25□□□□□ -0.29
NPHP4-203ENST00000378169 HNRNPDQ14103 355 aaKnown RBP13.25□□□□□ -0.29
NPHP4-203ENST00000378169 SETMARQ53H47 684 aaPredicted RBP13.25□□□□□ -0.29
NPHP4-203ENST00000378169 ZNF781Q8N8C0 355 aa13.25□□□□□ -0.29
NPHP4-203ENST00000378169 TNIP2Q8NFZ5 429 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms