RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 SLC28A1O00337 649 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 IL12AP29459 219 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 ADCY6O43306 1168 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 PGK1P00558 417 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 HOXB6P17509 224 aaKnown RBP12.53□□□□□ -0.4
VPS13A-204ENST00000376634 PABPC1LQ4VXU2 614 aaKnown RBP12.53□□□□□ -0.4
VPS13A-204ENST00000376634 SLC27A1Q6PCB7 646 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 MEIOBQ8N635 442 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 POC5Q8NA72 575 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 LINC00116Q8NCU8 138 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 ZNF563Q8TA94 476 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 SPATC1LQ9H0A9 340 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 APOC1P02654 83 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 GPD2P43304 727 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 HERVK_113P62684 666 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 ZNF844Q08AG5 666 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 MSANTD1Q6ZTZ1 278 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 GPRIN3Q6ZVF9 776 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 PTCD3Q96EY7 689 aaKnown RBP12.53□□□□□ -0.4
VPS13A-204ENST00000376634 KCNS3Q9BQ31 491 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 PNPLA3Q9NST1 481 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 RGPD8O14715 1765 aaPredicted RBP12.53□□□□□ -0.4
VPS13A-204ENST00000376634 BRWD1Q9NSI6 2320 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 RGSL1A5PLK6 1076 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 LOC110117498-PIK3R3F6TDL0 507 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 ZNF208O43345 1280 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 SUV39H1O43463 412 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 SNRPB2P08579 225 aaKnown RBP12.53□□□□□ -0.4
VPS13A-204ENST00000376634 CSH1P0DML2 217 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 CSH2P0DML3 217 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 EPHX2P34913 555 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 HKDC1Q2TB90 917 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 GJD3Q8N144 294 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 FUT8Q9BYC5 575 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 NFASCO94856 1347 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 CSDE1O75534 798 aaKnown RBP12.53□□□□□ -0.4
VPS13A-204ENST00000376634 LRIG2O94898 1065 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 ALDH3A2P51648 485 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 FSCN1Q16658 493 aaKnown RBP12.53□□□□□ -0.4
VPS13A-204ENST00000376634 SLC4A9Q96Q91 983 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 PLEKHA1Q9HB21 404 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 EURLQ9NYK6 297 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 ADAM28Q9UKQ2 775 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 GPC6Q9Y625 555 aaPredicted RBP12.53□□□□□ -0.4
VPS13A-204ENST00000376634 BDNFP23560 247 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 PTPN5P54829 565 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 RAD51AP1Q96B01 352 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 TDRD1Q9BXT4 1180 aaKnown RBP12.53□□□□□ -0.4
VPS13A-204ENST00000376634 MFHAS1Q9Y4C4 1052 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 PSMB4P28070 264 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 IRGCQ6NXR0 463 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 BRD9Q9H8M2 597 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 RPL21P46778 160 aaKnown RBP12.53□□□□□ -0.4
VPS13A-204ENST00000376634 STXBP1P61764 594 aaKnown RBP12.53□□□□□ -0.4
VPS13A-204ENST00000376634 NEPROQ6NW34 567 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 TTI2Q6NXR4 508 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 ADAMTSL2Q86TH1 951 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 SEMA4AQ9H3S1 761 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 C12orf4Q9NQ89 552 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 MORF4L1Q9UBU8 362 aa12.53□□□□□ -0.4
VPS13A-204ENST00000376634 SAMD4AQ9UPU9 718 aaKnown RBP12.53□□□□□ -0.4
VPS13A-204ENST00000376634 APOC4-APOC2K7ER74 178 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 QSOX1O00391 747 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 LSM1O15116 133 aaKnown RBP12.52□□□□□ -0.4
VPS13A-204ENST00000376634 CBX6O95503 412 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 APOC2P02655 101 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 ACAT1P24752 427 aaKnown RBP12.52□□□□□ -0.4
VPS13A-204ENST00000376634 AP3S2P59780 193 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 PERM1Q5SV97 790 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 SOCS4Q8WXH5 440 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 A0A0A0MRY4 1105 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 ACTR3P61158 418 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 FNBP1LQ5T0N5 605 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 CNSTQ6PJW8 725 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 ZCCHC23Q6ZST2 131 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 SPATA13Q96N96 652 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 MTF2Q9Y483 593 aaPredicted RBP12.52□□□□□ -0.4
VPS13A-204ENST00000376634 C1QTNF3-AMACRE9PGA6 284 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 INSRRP14616 1297 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 ATP4AP20648 1035 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 GALNTL5Q7Z4T8 443 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 TSEN15Q8WW01 171 aaKnown RBP12.52□□□□□ -0.4
VPS13A-204ENST00000376634 GBA2Q9HCG7 927 aaPredicted RBP12.52□□□□□ -0.4
VPS13A-204ENST00000376634 TBC1D24Q9ULP9 559 aa12.52□□□□□ -0.4
VPS13A-204ENST00000376634 FAM86C2PA6NEL3 165 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 PIGNO95427 931 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 IL1BP01584 269 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 CCNB1P14635 433 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 SSTR1P30872 391 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 IRF8Q02556 426 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 ADARB2Q9NS39 739 aaKnown RBP12.52□□□□□ -0.41
VPS13A-204ENST00000376634 KBTBD4Q9NVX7 518 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 SORCS3Q9UPU3 1222 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 NAV1Q8NEY1 1877 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 TIPRLO75663 272 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 OTCP00480 354 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 TFPIP10646 304 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 ATP5C1P36542 298 aaKnown RBP12.52□□□□□ -0.41
VPS13A-204ENST00000376634 OLR1P78380 273 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 ZIK1Q3SY52 487 aaPredicted RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms