RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 LIG3P49916 1009 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 MAXP61244 160 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 AP1S1P61966 158 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 EIF2B5Q13144 721 aaKnown RBP18.51■□□□□ 0.55
CLN3-202ENST00000355477 ZNF211Q13398 564 aaPredicted RBP18.51■□□□□ 0.55
CLN3-202ENST00000355477 ZNF235Q14590 738 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 IRF4Q15306 451 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 WSCD2Q2TBF2 565 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 PROX2Q3B8N5 592 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 NCBP2-AS2Q69YL0 99 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 ERAP2Q6P179 960 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 CNGA4Q8IV77 575 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 KDF1Q8NAX2 398 aaPredicted RBP18.51■□□□□ 0.55
CLN3-202ENST00000355477 NOD2Q9HC29 1040 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 PNMA8BQ9ULN7 279 aaPredicted RBP18.51■□□□□ 0.55
CLN3-202ENST00000355477 PCDHGC4Q9Y5F7 938 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 PKD1L2Q7Z442 2459 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 ACACAQ13085 2346 aa18.51■□□□□ 0.55
CLN3-202ENST00000355477 FAM149AA5PLN7 773 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 NEBLO76041 1014 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 KRT7P08729 469 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 NME1P15531 152 aaKnown RBP18.5■□□□□ 0.55
CLN3-202ENST00000355477 MAN1A1P33908 653 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 CLDN6P56747 220 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 RALGDSQ12967 914 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 PAFAH1B3Q15102 231 aaKnown RBP18.5■□□□□ 0.55
CLN3-202ENST00000355477 PDK2Q15119 407 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 SMAD1Q15797 465 aaKnown RBP18.5■□□□□ 0.55
CLN3-202ENST00000355477 MARC1Q5VT66 337 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 PARGQ86W56 976 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 PQLC3Q8N755 202 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 TC2NQ8N9U0 490 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 OR4C6Q8NH72 309 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 LRRN4Q8WUT4 740 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 RAPGEF5Q92565 580 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 FAF2Q96CS3 445 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 NUDCD1Q96RS6 583 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 MGME1Q9BQP7 344 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 ZNF670Q9BS34 389 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 C1QTNF7Q9BXJ2 289 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 SCUBE2Q9NQ36 999 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 LCMT1Q9UIC8 334 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 PCDHGA1Q9Y5H4 931 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 CFAP47Q6ZTR5 3102 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 APC2O95996 2303 aa18.5■□□□□ 0.55
CLN3-202ENST00000355477 LAMA5O15230 3695 aa18.49■□□□□ 0.55
CLN3-202ENST00000355477 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.49■□□□□ 0.55
CLN3-202ENST00000355477 A8MX80 341 aa18.49■□□□□ 0.55
CLN3-202ENST00000355477 HTRA2O43464 458 aaPredicted RBP18.49■□□□□ 0.55
CLN3-202ENST00000355477 KRT37O76014 449 aa18.49■□□□□ 0.55
CLN3-202ENST00000355477 MTA2O94776 668 aa18.49■□□□□ 0.55
CLN3-202ENST00000355477 CAPNS1P04632 268 aa18.49■□□□□ 0.55
CLN3-202ENST00000355477 CKMT2P17540 419 aa18.49■□□□□ 0.55
CLN3-202ENST00000355477 KDELR1P24390 212 aa18.49■□□□□ 0.55
CLN3-202ENST00000355477 HSPA9P38646 679 aaKnown RBP18.49■□□□□ 0.55
CLN3-202ENST00000355477 GARSP41250 739 aaKnown RBP18.49■□□□□ 0.55
CLN3-202ENST00000355477 MMP13P45452 471 aa18.49■□□□□ 0.55
CLN3-202ENST00000355477 HNRNPKP61978 463 aaKnown RBP eCLIP18.49■□□□□ 0.55
CLN3-202ENST00000355477 YPEL5P62699 121 aa18.49■□□□□ 0.55
CLN3-202ENST00000355477 GALNT2Q10471 571 aa18.49■□□□□ 0.55
CLN3-202ENST00000355477 SLC10A2Q12908 348 aaPredicted RBP18.49■□□□□ 0.55
CLN3-202ENST00000355477 LRRC14Q15048 493 aa18.49■□□□□ 0.55
CLN3-202ENST00000355477 AGERQ15109 404 aa18.49■□□□□ 0.55
CLN3-202ENST00000355477 TEX26Q8N6G2 289 aa18.49■□□□□ 0.55
CLN3-202ENST00000355477 TCEAL2Q9H3H9 227 aaPredicted RBP18.49■□□□□ 0.55
CLN3-202ENST00000355477 ZMIZ1Q9ULJ6 1067 aa18.49■□□□□ 0.55
CLN3-202ENST00000355477 RP1P56715 2156 aa18.49■□□□□ 0.55
CLN3-202ENST00000355477 SCAMP1O15126 338 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 LZTS3O60299 673 aaPredicted RBP18.48■□□□□ 0.55
CLN3-202ENST00000355477 RFPL3O75679 317 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 C1SP09871 688 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 MYF5P13349 255 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 JUNDP17535 347 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 GM2AP17900 193 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 ARHGAP25P42331 645 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 THOP1P52888 689 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 POLR2LP62875 67 aaKnown RBP18.48■□□□□ 0.55
CLN3-202ENST00000355477 GBE1Q04446 702 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 TRAF2Q12933 501 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 LIPIQ6XZB0 460 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 DPPA4Q7L190 304 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 LRRC49Q8IUZ0 686 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 MAP7D3Q8IWC1 876 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 GALNT15Q8N3T1 639 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 PAF1Q8N7H5 531 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 ZNF548Q8NEK5 533 aaPredicted RBP18.48■□□□□ 0.55
CLN3-202ENST00000355477 PDCD6IPQ8WUM4 868 aaKnown RBP18.48■□□□□ 0.55
CLN3-202ENST00000355477 NSMCE1Q8WV22 266 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 RBSNQ9H1K0 784 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 NT5MQ9NPB1 228 aa18.48■□□□□ 0.55
CLN3-202ENST00000355477 CELSR3Q9NYQ7 3312 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 CFAP69A5D8W1 941 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 TMEM8BA6NDV4 472 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 K7ESM1 405 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 ACP1P24666 158 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 PTK2BQ14289 1009 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 IHHQ14623 411 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 INPP5AQ14642 412 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 ZFYVE27Q5T4F4 411 aa18.47■□□□□ 0.55
CLN3-202ENST00000355477 NYAP1Q6ZVC0 841 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms