RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 POLD3Q15054 466 aaPredicted RBP21.91■■□□□ 1.1
SHMT1-202ENST00000352886 C10orf120Q5SQS8 335 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 KLC3Q6P597 504 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 TRAF7Q6Q0C0 670 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 KBTBD6Q86V97 674 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 ARRDC2Q8TBH0 407 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 HDAC10Q969S8 669 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 TSPAN17Q96FV3 270 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 MAELQ96JY0 434 aaKnown RBP21.91■■□□□ 1.1
SHMT1-202ENST00000352886 RPRD1AQ96P16 312 aaPredicted RBP21.91■■□□□ 1.1
SHMT1-202ENST00000352886 IL37Q9NZH6 218 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 STK39Q9UEW8 545 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 CASP8AP2Q9UKL3 1982 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 SDHDO14521 159 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 RAMP2O60895 175 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 IPO13O94829 963 aaKnown RBP21.91■■□□□ 1.1
SHMT1-202ENST00000352886 PLK1P53350 603 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 PRAMEP78395 509 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 SULT2A1Q06520 285 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 GSTA3Q16772 222 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 ANKRD49Q8WVL7 239 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 SERPINI1Q99574 410 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 SLC27A5Q9Y2P5 690 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 THSD7BQ9C0I4 1608 aa21.91■■□□□ 1.1
SHMT1-202ENST00000352886 MAGEA13PA6NCF6 341 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 SYN3O14994 580 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 SLC7A4O43246 635 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 GJB3O75712 270 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 SNUPNO95149 360 aaKnown RBP21.9■■□□□ 1.1
SHMT1-202ENST00000352886 TAF10Q12962 218 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 FAM171A1Q5VUB5 890 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 BNC2Q6ZN30 1099 aaPredicted RBP21.9■■□□□ 1.1
SHMT1-202ENST00000352886 RPS27LQ71UM5 84 aaKnown RBP21.9■■□□□ 1.1
SHMT1-202ENST00000352886 CCDC126Q96EE4 140 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 CDRT15Q96T59 188 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 PPP1R12CQ9BZL4 782 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 VWA7Q9Y334 891 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 KCTD3Q9Y597 815 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 GREB1Q4ZG55 1949 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 SLC12A8A0AV02 714 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 FAM92AA1XBS5 289 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 OR51F1A6NGY5 319 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 TM4SF4P48230 202 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 SLC14A2Q15849 920 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 RASIP1Q5U651 963 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 UBXN10Q96LJ8 280 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 MFSD1Q9H3U5 465 aa21.9■■□□□ 1.1
SHMT1-202ENST00000352886 TLR8Q9NR97 1041 aaKnown RBP21.9■■□□□ 1.1
SHMT1-202ENST00000352886 MARCH4Q9P2E8 410 aaPredicted RBP21.9■■□□□ 1.1
SHMT1-202ENST00000352886 H3BNX3 289 aa21.89■■□□□ 1.1
SHMT1-202ENST00000352886 ATXN1LP0C7T5 689 aaKnown RBP21.89■■□□□ 1.1
SHMT1-202ENST00000352886 ENO3P13929 434 aaPredicted RBP21.89■■□□□ 1.1
SHMT1-202ENST00000352886 PEX2P28328 305 aa21.89■■□□□ 1.1
SHMT1-202ENST00000352886 OR1E1P30953 314 aa21.89■■□□□ 1.1
SHMT1-202ENST00000352886 FAM189BP81408 668 aa21.89■■□□□ 1.1
SHMT1-202ENST00000352886 IL10RBQ08334 325 aa21.89■■□□□ 1.1
SHMT1-202ENST00000352886 HERC3Q15034 1050 aa21.89■■□□□ 1.1
SHMT1-202ENST00000352886 SDCCAG8Q86SQ7 713 aaPredicted RBP21.89■■□□□ 1.1
SHMT1-202ENST00000352886 RNF180Q86T96 592 aa21.89■■□□□ 1.1
SHMT1-202ENST00000352886 PDSS2Q86YH6 399 aa21.89■■□□□ 1.1
SHMT1-202ENST00000352886 CEP70Q8NHQ1 597 aa21.89■■□□□ 1.1
SHMT1-202ENST00000352886 GDPD5Q8WTR4 605 aa21.89■■□□□ 1.1
SHMT1-202ENST00000352886 TADA1Q96BN2 335 aa21.89■■□□□ 1.1
SHMT1-202ENST00000352886 PHF21BQ96EK2 531 aa21.89■■□□□ 1.1
SHMT1-202ENST00000352886 OLA1Q9NTK5 396 aaKnown RBP21.89■■□□□ 1.1
SHMT1-202ENST00000352886 CFLARO15519 480 aa21.89■■□□□ 1.09
SHMT1-202ENST00000352886 RBP1P09455 135 aa21.89■■□□□ 1.09
SHMT1-202ENST00000352886 UBTFL6P0CB48 400 aaPredicted RBP21.89■■□□□ 1.09
SHMT1-202ENST00000352886 ACVRL1P37023 503 aa21.89■■□□□ 1.09
SHMT1-202ENST00000352886 THOP1P52888 689 aa21.89■■□□□ 1.09
SHMT1-202ENST00000352886 CDKN2DP55273 166 aa21.89■■□□□ 1.09
SHMT1-202ENST00000352886 SERINC3Q13530 473 aa21.89■■□□□ 1.09
SHMT1-202ENST00000352886 ACAP2Q15057 778 aa21.89■■□□□ 1.09
SHMT1-202ENST00000352886 MAP3K21Q5TCX8 1036 aa21.89■■□□□ 1.09
SHMT1-202ENST00000352886 GALNT7Q86SF2 657 aa21.89■■□□□ 1.09
SHMT1-202ENST00000352886 MYEOVQ96EZ4 313 aa21.89■■□□□ 1.09
SHMT1-202ENST00000352886 NR1H4Q96RI1 486 aaPredicted RBP21.89■■□□□ 1.09
SHMT1-202ENST00000352886 SEMA3CQ99985 751 aa21.89■■□□□ 1.09
SHMT1-202ENST00000352886 EBF3Q9H4W6 596 aa21.89■■□□□ 1.09
SHMT1-202ENST00000352886 TNFRSF12AQ9NP84 129 aa21.89■■□□□ 1.09
SHMT1-202ENST00000352886 LOC285095A0A1B0GVY8 99 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 DRGXA6NNA5 263 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 LDB2O43679 373 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 S1PR4O95977 384 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 TNK2Q07912 1038 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 MGAT5BQ3V5L5 792 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 PARP15Q460N3 678 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 SFT2D3Q587I9 215 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 TMEM207Q6UWW9 146 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 PGAM4Q8N0Y7 254 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 SEPT5Q99719 369 aaPredicted RBP21.88■■□□□ 1.09
SHMT1-202ENST00000352886 GPR62Q9BZJ7 368 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 KLHL4Q9C0H6 718 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 VCX3BQ9H321 246 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 EML4Q9HC35 981 aaKnown RBP21.88■■□□□ 1.09
SHMT1-202ENST00000352886 MTF2Q9Y483 593 aaPredicted RBP21.88■■□□□ 1.09
SHMT1-202ENST00000352886 ART3Q13508 389 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 TRIP10Q15642 601 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 PIGGQ5H8A4 983 aa21.88■■□□□ 1.09
SHMT1-202ENST00000352886 OR52E8Q6IFG1 317 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms