RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 PDE4DIPQ5VU43 2346 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 A0A096LPK6 155 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 OR51F1A6NGY5 319 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 SLC7A4O43246 635 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 EDF1O60869 148 aaKnown RBP13.46□□□□□ -0.25
HMGB1-202ENST00000339872 SLC4A1P02730 911 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 MPOP05164 745 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 POU2F2P09086 479 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 HLA-FP30511 346 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 CD151P48509 253 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 PITRM1Q5JRX3 1037 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 PPP2R2DQ66LE6 453 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 TMC5Q6UXY8 1006 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 KYAT3Q6YP21 454 aaKnown RBP13.46□□□□□ -0.25
HMGB1-202ENST00000339872 GLT6D1Q7Z4J2 308 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 SPATA21Q7Z572 469 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 SRLQ86TD4 932 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 SPATS2Q86XZ4 545 aaKnown RBP13.46□□□□□ -0.25
HMGB1-202ENST00000339872 OR13C4Q8NGS5 318 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 OR6K2Q8NGY2 324 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 ADGRE3Q9BY15 652 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 LINC00597Q9H2U6 94 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 FBXO6Q9NRD1 293 aaPredicted RBP13.46□□□□□ -0.25
HMGB1-202ENST00000339872 TBC1D14Q9P2M4 693 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 EMCNQ9ULC0 261 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 WNT6Q9Y6F9 365 aa13.46□□□□□ -0.25
HMGB1-202ENST00000339872 FAM95CA0A1B0GW59 222 aa13.46□□□□□ -0.26
HMGB1-202ENST00000339872 AURKAO14965 403 aa13.46□□□□□ -0.26
HMGB1-202ENST00000339872 CRTAMO95727 393 aa13.46□□□□□ -0.26
HMGB1-202ENST00000339872 HADHAP40939 763 aa13.46□□□□□ -0.26
HMGB1-202ENST00000339872 IRF9Q00978 393 aa13.46□□□□□ -0.26
HMGB1-202ENST00000339872 IFT88Q13099 833 aa13.46□□□□□ -0.26
HMGB1-202ENST00000339872 USP10Q14694 798 aaKnown RBP13.46□□□□□ -0.26
HMGB1-202ENST00000339872 KIAA0408Q6ZU52 694 aa13.46□□□□□ -0.26
HMGB1-202ENST00000339872 RAPH1Q70E73 1250 aa13.46□□□□□ -0.26
HMGB1-202ENST00000339872 SLC41A1Q8IVJ1 513 aa13.46□□□□□ -0.26
HMGB1-202ENST00000339872 IRF7Q92985 503 aa13.46□□□□□ -0.26
HMGB1-202ENST00000339872 RPL10LQ96L21 214 aaKnown RBP13.46□□□□□ -0.26
HMGB1-202ENST00000339872 TBATAQ96M53 351 aa13.46□□□□□ -0.26
HMGB1-202ENST00000339872 SMIM14Q96QK8 99 aa13.46□□□□□ -0.26
HMGB1-202ENST00000339872 MFSD1Q9H3U5 465 aa13.46□□□□□ -0.26
HMGB1-202ENST00000339872 SUDS3Q9H7L9 328 aaPredicted RBP13.46□□□□□ -0.26
HMGB1-202ENST00000339872 SPHK2Q9NRA0 654 aa13.46□□□□□ -0.26
HMGB1-202ENST00000339872 ZMYM5Q9UJ78 669 aa13.46□□□□□ -0.26
HMGB1-202ENST00000339872 USP15Q9Y4E8 981 aaPredicted RBP13.46□□□□□ -0.26
HMGB1-202ENST00000339872 RPP40O75818 363 aaKnown RBP13.45□□□□□ -0.26
HMGB1-202ENST00000339872 HAUS5O94927 633 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 PENKP01210 267 aaPredicted RBP13.45□□□□□ -0.26
HMGB1-202ENST00000339872 C2P06681 752 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 CTSOP43234 321 aaPredicted RBP13.45□□□□□ -0.26
HMGB1-202ENST00000339872 AP1S1P61966 158 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 ACVR1Q04771 509 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 SLC12A1Q13621 1099 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 DUSP6Q16828 381 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 INSCQ1MX18 579 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 FUT11Q495W5 492 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 EFHBQ8N7U6 833 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 GPATCH11Q8N954 259 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 STYXQ8WUJ0 223 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 PEX13Q92968 403 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 GRAMD1AQ96CP6 724 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 LMLNQ96KR4 655 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 ZNF358Q9NW07 568 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 TMEM216Q9P0N5 145 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 GGA2Q9UJY4 613 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 ANKRD66B4E2M5 251 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 PHGDHO43175 533 aaKnown RBP13.45□□□□□ -0.26
HMGB1-202ENST00000339872 PLIN3O60664 434 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 TYRP14679 529 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 SLC8A1P32418 973 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 STK19P49842 368 aaPredicted RBP13.45□□□□□ -0.26
HMGB1-202ENST00000339872 PLK1P53350 603 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 PGGT1BP53609 377 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 ITIH4Q14624 930 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 ZNF789Q5FWF6 425 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 RALGPS1Q5JS13 557 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 LY6G5CQ5SRR4 150 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 ASTLQ6HA08 431 aaPredicted RBP13.45□□□□□ -0.26
HMGB1-202ENST00000339872 CNSTQ6PJW8 725 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 OTOAQ7RTW8 1153 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 LDB1Q86U70 411 aaPredicted RBP13.45□□□□□ -0.26
HMGB1-202ENST00000339872 CILP2Q8IUL8 1156 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 NUDCD3Q8IVD9 361 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 PLD6Q8N2A8 252 aaKnown RBP13.45□□□□□ -0.26
HMGB1-202ENST00000339872 PNPLA1Q8N8W4 532 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 MDGA1Q8NFP4 955 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 THOC1Q96FV9 657 aaKnown RBP13.45□□□□□ -0.26
HMGB1-202ENST00000339872 ELMO2Q96JJ3 720 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 TNKS2Q9H2K2 1166 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 MARCH4Q9P2E8 410 aaPredicted RBP13.45□□□□□ -0.26
HMGB1-202ENST00000339872 EVLQ9UI08 416 aaPredicted RBP13.45□□□□□ -0.26
HMGB1-202ENST00000339872 STARD13Q9Y3M8 1113 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 PCDHB9Q9Y5E1 797 aa13.45□□□□□ -0.26
HMGB1-202ENST00000339872 RANBP2P49792 3224 aaKnown RBP13.44□□□□□ -0.26
HMGB1-202ENST00000339872 GOT2P00505 430 aaKnown RBP13.44□□□□□ -0.26
HMGB1-202ENST00000339872 BPGMP07738 259 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 ZNF140P52738 457 aaPredicted RBP13.44□□□□□ -0.26
HMGB1-202ENST00000339872 EPHB1P54762 984 aa13.44□□□□□ -0.26
HMGB1-202ENST00000339872 TAF1AQ15573 450 aaPredicted RBP13.44□□□□□ -0.26
HMGB1-202ENST00000339872 TAF1BQ53T94 588 aaPredicted RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms