RNA–Protein interactions for RNA: ENST00000338427.10

NUDCD3-201, Transcript of NudC domain containing 3, humanhuman

TSL 3

Gene NUDCD3, Length 779 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3-201ENST00000338427 LRRC61Q9BV99 259 aa13.47□□□□□ -0.25
NUDCD3-201ENST00000338427 NRSN2Q9GZP1 204 aa13.47□□□□□ -0.25
NUDCD3-201ENST00000338427 THAP2Q9H0W7 228 aa13.47□□□□□ -0.25
NUDCD3-201ENST00000338427 ABCG4Q9H172 646 aa13.47□□□□□ -0.25
NUDCD3-201ENST00000338427 GULP1Q9UBP9 304 aa13.47□□□□□ -0.25
NUDCD3-201ENST00000338427 APOBEC3BQ9UH17 382 aaKnown RBP13.47□□□□□ -0.25
NUDCD3-201ENST00000338427 CSNK1G3Q9Y6M4 447 aa13.47□□□□□ -0.25
NUDCD3-201ENST00000338427 RP1P56715 2156 aa13.47□□□□□ -0.25
NUDCD3-201ENST00000338427 A0A087X0T9 212 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 A0A1W2PNU3 283 aaPredicted RBP13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 TSPAN11A1L157 253 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 H3BM21 787 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 USP12O75317 370 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 CSO75390 466 aaKnown RBP13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 FAM228BP0C875 321 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 CSNK1DP48730 415 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 UBASH3AP57075 661 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 YPEL5P62699 121 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 PPARDQ03181 441 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 IL10RBQ08334 325 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 CCDC173Q0VFZ6 552 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 RALGDSQ12967 914 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 MMRN1Q13201 1228 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 ALG11Q2TAA5 492 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 POLNQ7Z5Q5 900 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 FNIP1Q8TF40 1166 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 NXPE2Q96DL1 559 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 ZNF641Q96N77 438 aaPredicted RBP13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 SMIM14Q96QK8 99 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 DUSP23Q9BVJ7 150 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 EDEM3Q9BZQ6 932 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 SP110Q9HB58 689 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 SCUBE2Q9NQ36 999 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 MRPL40Q9NQ50 206 aaKnown RBP13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 SIRPGQ9P1W8 387 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 SPASTQ9UBP0 616 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 SALL4Q9UJQ4 1053 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 ATP8A1Q9Y2Q0 1164 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 PCDHGC4Q9Y5F7 938 aa13.46□□□□□ -0.25
NUDCD3-201ENST00000338427 EME2A4GXA9 379 aaPredicted RBP13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 TRAFD1O14545 582 aaPredicted RBP13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 RECQL5O94762 991 aaPredicted RBP13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 PEX11BO96011 259 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 ANXA6P08133 673 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 CD48P09326 243 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 DESP17661 470 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 HTR7P34969 479 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 MMP12P39900 470 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 HCAR3P49019 387 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 DUSP3P51452 185 aaPredicted RBP13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 MAXP61244 160 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 BCL2L1Q07817 233 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 ELP6Q0PNE2 266 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 PTK2BQ14289 1009 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 LBRQ14739 615 aaKnown RBP13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 NFKBIBQ15653 356 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 TDRD12Q587J7 1177 aaKnown RBP13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 ZCCHC8Q6NZY4 707 aaKnown RBP13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 LIPIQ6XZB0 460 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 CACTIN-AS1Q8N1I8 211 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 HCAR2Q8TDS4 363 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 FGF11Q92914 225 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 CINPQ9BW66 212 aaPredicted RBP13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 BOCQ9BWV1 1114 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 LGR4Q9BXB1 951 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 SLC13A1Q9BZW2 595 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 RABGEF1Q9UJ41 708 aa13.45□□□□□ -0.26
NUDCD3-201ENST00000338427 TMEM202A6NGA9 273 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 LMO7DNF2Z398 122 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 AGRPO00253 132 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 IL4RP24394 825 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 PCK1P35558 622 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 HK3P52790 923 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 SRP54P61011 504 aaKnown RBP13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 NSUN2Q08J23 767 aaKnown RBP eCLIP13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 IHHQ14623 411 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 NR0B2Q15466 257 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 KIF26BQ2KJY2 2108 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 ISXQ2M1V0 245 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 BOLA3Q53S33 107 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 CFAP58Q5T655 872 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 DENND2CQ68D51 928 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 PPP1R2P3Q6NXS1 205 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 ERAP2Q6P179 960 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 BRAT1Q6PJG6 821 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 MACC1Q6ZN28 852 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 RFLNAQ6ZTI6 216 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 ZSCAN30Q86W11 494 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 PAF1Q8N7H5 531 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 BTN2A2Q8WVV5 523 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 OR1E3Q8WZA6 343 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 ECHDC3Q96DC8 303 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 ATXN7L3BQ96GX2 97 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 CSPG4P5Q96PW8 444 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 NUP85Q9BW27 656 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 C1QTNF7Q9BXJ2 289 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 ATP13A3Q9H7F0 1226 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 NOD2Q9HC29 1040 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 PCDH18Q9HCL0 1135 aa13.44□□□□□ -0.26
NUDCD3-201ENST00000338427 MRPL47Q9HD33 250 aaKnown RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms