RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 SERPINB7O75635 380 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 SP100P23497 879 aaPredicted RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 HALP42357 657 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 FOXM1Q08050 763 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 STX4Q12846 297 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 TYSND1Q2T9J0 566 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 CRY2Q49AN0 593 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 UBAP1Q9NZ09 502 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 CRYL1Q9Y2S2 319 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 TRAF6Q9Y4K3 522 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 ZNF487B1APH4 448 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 CHST10O43529 356 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 LYNP07948 512 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 PTPN1P18031 435 aaKnown RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 ELP6Q0PNE2 266 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 RBFAQ8N0V3 343 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 RBM15BQ8NDT2 890 aaKnown RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 SPPL2AQ8TCT8 520 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 CPB2Q96IY4 423 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 FTHL17Q9BXU8 183 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 POLR1BQ9H9Y6 1135 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 WBP11Q9Y2W2 641 aaKnown RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 SNCAIPQ9Y6H5 919 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 AVILO75366 819 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 GSTM1P09488 218 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 C7P10643 843 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 THPOP40225 353 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 AMHR2Q16671 573 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 TNFAIP8L3Q5GJ75 292 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 FBXO16Q8IX29 292 aaPredicted RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 ZNF668Q96K58 619 aaPredicted RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 RNF181Q9P0P0 153 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 USP54Q70EL1 1684 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 ADAMDEC1O15204 470 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 CATP04040 527 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 DPY19L1Q2PZI1 675 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 KLHL17Q6TDP4 642 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 CERS6Q6ZMG9 384 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 ZSCAN18Q8TBC5 510 aaPredicted RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 PHF10Q8WUB8 498 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 ALG9Q9H6U8 611 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 IKZF3Q9UKT9 509 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 COQ4Q9Y3A0 265 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 ALS2Q96Q42 1657 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 ZW10O43264 779 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 DNAJB5O75953 348 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 TFRCP02786 760 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 LIMK2P53671 638 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 KLHL23Q8NBE8 558 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 OR52K1Q8NGK4 314 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 PLEKHG4BQ96PX9 1271 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 MOSPD1Q9UJG1 213 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 H3BN98 237 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 ALOX12P18054 663 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 NTSP30990 170 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 PTGIRP43119 386 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 C10orf107Q8IVU9 208 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 ARRDC4Q8NCT1 418 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 NMUR2Q9GZQ4 415 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 TMEM9Q9P0T7 183 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 TRIP11Q15643 1979 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 FARP2O94887 1054 aaPredicted RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 FTH1P02794 183 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 MRPS5P82675 430 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 ZC3H12AQ5D1E8 599 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 THAP5Q7Z6K1 395 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 ZNF655Q8N720 491 aaPredicted RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 PPP1R16AQ96I34 528 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 NTPCRQ9BSD7 190 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 NIFKQ9BYG3 293 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 NXF3Q9H4D5 531 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 SLCO1B3Q9NPD5 702 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 INTS10Q9NVR2 710 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 CLIC5Q9NZA1 410 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 EHD3Q9NZN3 535 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 URODP06132 367 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 CAPZA2P47755 286 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 TMEM44Q2T9K0 475 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 ZCCHC23Q6ZST2 131 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 ARL15Q9NXU5 204 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 ZNF112Q9UJU3 913 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 SHROOM3Q8TF72 1996 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 PIPSLA2A3N6 862 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 LOC110117498-PIK3R3F6TDL0 507 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 SLC9A3R1O14745 358 aaPredicted RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 CDK9P50750 372 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 QPRTQ15274 297 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 PTF1AQ7RTS3 328 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 CHCHD4Q8N4Q1 142 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 PPTC7Q8NI37 304 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 PIK3R3Q92569 461 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 SLC47A1Q96FL8 570 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 FAIM2Q9BWQ8 316 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 ATP13A3Q9H7F0 1226 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 NOCTQ9UK39 431 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 ENTPD4Q9Y227 616 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 SLC12A8A0AV02 714 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 SNPHO15079 494 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 CCNE2O96020 404 aa10.33□□□□□ -0.76
CCDC88A-202ENST00000336838 NPPAP01160 153 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms