RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 JADE1Q6IE81 842 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 ACOT1Q86TX2 421 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 FUNDC1Q8IVP5 155 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 SEPT8Q92599 483 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 FEM1CQ96JP0 617 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 MAELQ96JY0 434 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 IL12RB2Q99665 862 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 FTHL17Q9BXU8 183 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 LRRC40Q9H9A6 602 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 RNF19AQ9NV58 838 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 ARMC1Q9NVT9 282 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 USP22Q9UPT9 525 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 LACTBL1A8MY62 500 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 INPP4BO15327 924 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 VDRP11473 427 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 FASP25445 335 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 ALDH4A1P30038 563 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 CCT8P50990 548 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 MPP1Q00013 466 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 SLC6A3Q01959 620 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 SELENBP1Q13228 472 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 VPS26BQ4G0F5 336 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 PYCR3Q53H96 274 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 XAF1Q6GPH4 301 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 ZNF354CQ86Y25 554 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 IQCF2Q8IXL9 164 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 ANKRD52Q8NB46 1076 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 ZFP90Q8TF47 636 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 SEZ6LQ9BYH1 1024 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 ADNPQ9H2P0 1102 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 TMEM134Q9H6X4 195 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 PSME2Q9UL46 239 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 TIMM22Q9Y584 194 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 PSMD11O00231 422 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 CLASP2O75122 1294 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 H2AFYO75367 372 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 RSL1D1O76021 490 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 AHSGP02765 367 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 LCP1P13796 627 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 IL7RP16871 459 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 SHMT2P34897 504 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 CAPGP40121 348 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 PCYT1AP49585 367 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 ARPC4P59998 168 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 LSM3P62310 102 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 ACAP2Q15057 778 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 SURF1Q15526 300 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 ATP6AP1Q15904 470 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 INTS11Q5TA45 600 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 TMEM135Q86UB9 458 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 SMG8Q8ND04 991 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 PHF21BQ96EK2 531 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 CCDC138Q96M89 665 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 SEPHS2Q99611 448 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 MROQ9BYG7 248 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 VRTNQ9H8Y1 702 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 KLHL8Q9P2G9 620 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 INO80B-WBP1J3KQ70 363 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 PFDN6O15212 129 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 BDNFP23560 247 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 NR2C2P49116 596 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 PLA2G16P53816 162 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 TIGD2Q4W5G0 525 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 ZPBP2Q6X784 338 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 ZC3HC1Q86WB0 502 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 C7orf31Q8N865 590 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 TOP1MTQ969P6 601 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 DUS3LQ96G46 650 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 TSNARE1Q96NA8 513 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 TDRD1Q9BXT4 1180 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 ADAMTS10Q9H324 1103 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 RAD21L1Q9H4I0 556 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 SMARCAD1Q9H4L7 1026 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 MAP10Q9P2G4 905 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 EVLQ9UI08 416 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 SARDHQ9UL12 918 aa13.53□□□□□ -0.24
CCDC88C-201ENST00000331194 CNTNAP1P78357 1384 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 NR5A2O00482 541 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 PEX10O60683 326 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 AXLP30530 894 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 NR4A2P43354 598 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 CYP51A1Q16850 503 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 IMPG1Q17R60 797 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 NEPROQ6NW34 567 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 ITIH5Q86UX2 942 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 CLIP4Q8N3C7 705 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 TRAPPC12Q8WVT3 735 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 C3orf30Q96M34 536 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 TBCBQ99426 244 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 NAT9Q9BTE0 207 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 TBC1D13Q9NVG8 400 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 BFARQ9NZS9 450 aa13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 MAFBQ9Y5Q3 323 aaPredicted RBP13.52□□□□□ -0.24
CCDC88C-201ENST00000331194 A0A1W2PQ67 120 aa13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 IQCA1LA6NCM1 817 aa13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 SLCO1B7G3V0H7 640 aa13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 BCAS1O75363 584 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 HSPA8P11142 646 aaKnown RBP13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 IL10P22301 178 aa13.52□□□□□ -0.25
CCDC88C-201ENST00000331194 TTKP33981 857 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms