RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 RBM47A0AV96 593 aaKnown RBP14.35□□□□□ -0.11
COL7A1-201ENST00000328333 RAB27AP51159 221 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 PEX6Q13608 980 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 PLEKHG6Q3KR16 790 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 DEF8Q6ZN54 512 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 CNTD1Q8N815 330 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 RUSC1Q9BVN2 902 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 TBCCD1Q9NVR7 557 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 CDH7Q9ULB5 785 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 PCDHB7Q9Y5E2 793 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 HEATR1Q9H583 2144 aaKnown RBP14.35□□□□□ -0.11
COL7A1-201ENST00000328333 ERBB2P04626 1255 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 MTMR2Q13614 643 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 GRHL2Q6ISB3 625 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 GCNT7Q6ZNI0 430 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 USP45Q70EL2 814 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 ZNF720Q7Z2F6 126 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 PARK7Q99497 189 aaKnown RBP14.35□□□□□ -0.11
COL7A1-201ENST00000328333 S100A14Q9HCY8 104 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 LRG1P02750 347 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 TYMPP19971 482 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 CLK3P49761 638 aaKnown RBP14.35□□□□□ -0.11
COL7A1-201ENST00000328333 RAB10P61026 200 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 GPRIN3Q6ZVF9 776 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 GMCL1Q96IK5 515 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 XPNPEP3Q9NQH7 507 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 RABL2AQ9UBK7 228 aaPredicted RBP14.35□□□□□ -0.11
COL7A1-201ENST00000328333 RABL2BQ9UNT1 228 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 TBX2Q13207 712 aaPredicted RBP14.35□□□□□ -0.11
COL7A1-201ENST00000328333 CHST15Q7LFX5 561 aaPredicted RBP14.35□□□□□ -0.11
COL7A1-201ENST00000328333 ZNF248Q8NDW4 579 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 ANKRA2Q9H9E1 313 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 ARHGEF28Q8N1W1 1705 aaKnown RBP14.34□□□□□ -0.11
COL7A1-201ENST00000328333 PITPNM1O00562 1244 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 LHFPL3Q86UP9 236 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 TMEM192Q8IY95 271 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 ACAT2Q9BWD1 397 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 MRPS7Q9Y2R9 242 aaKnown RBP14.34□□□□□ -0.11
COL7A1-201ENST00000328333 FER1L6Q2WGJ9 1857 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 SLC28A1O00337 649 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 PET100P0DJ07 73 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 F8A1P23610 371 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 PCID2Q5JVF3 399 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 ARL10Q8N8L6 244 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 ART4Q93070 314 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 CERS2Q96G23 380 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 OSGEPQ9NPF4 335 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 TULP2O00295 520 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 OR10H3O60404 316 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 ICAM1P05362 532 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 PGRP06401 933 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 BMPR2Q13873 1038 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 EFCAB12Q6NXP0 572 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 CENPNQ96H22 339 aaPredicted RBP14.34□□□□□ -0.11
COL7A1-201ENST00000328333 NXF3Q9H4D5 531 aaKnown RBP14.34□□□□□ -0.11
COL7A1-201ENST00000328333 URADA6NGE7 173 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 KMOO15229 486 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 AVILO75366 819 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 PHB2Q99623 299 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 FAM172BPA6NC97 362 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 C21orf2O43822 256 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 PLIN3O60664 434 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 JCHAINP01591 159 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 SPIBQ01892 262 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 KCNA10Q16322 511 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 C15orf59Q2T9L4 293 aaPredicted RBP14.34□□□□□ -0.11
COL7A1-201ENST00000328333 FNBP1LQ5T0N5 605 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 CLNKQ7Z7G1 428 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 MTMR8Q96EF0 704 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 YES1P07947 543 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 OVOS1Q6IE37 1185 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 ZZZ3Q8IYH5 903 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 PGAM4Q8N0Y7 254 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 ALLCQ8N6M5 410 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 ACE2Q9BYF1 805 aaPredicted RBP14.34□□□□□ -0.11
COL7A1-201ENST00000328333 RPS6KA4O75676 772 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 STARD3Q14849 445 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 DNAJC28Q9NX36 388 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 E7ENX8 843 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 GPR162Q16538 588 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 ZDHHC15Q96MV8 337 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 SCGB3A2Q96PL1 93 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 SENP2Q9HC62 589 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 ARHGAP20Q9P2F6 1191 aa14.34□□□□□ -0.11
COL7A1-201ENST00000328333 ESPL1Q14674 2120 aa14.33□□□□□ -0.11
COL7A1-201ENST00000328333 FAM153CQ494X1 144 aa14.33□□□□□ -0.11
COL7A1-201ENST00000328333 MARCH7Q9H992 704 aa14.33□□□□□ -0.11
COL7A1-201ENST00000328333 RPTORQ8N122 1335 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 SGPL1O95470 568 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 PAMR1Q6UXH9 720 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 SP8Q8IXZ3 490 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 EXD2Q9NVH0 621 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 MRTO4Q9UKD2 239 aaKnown RBP14.33□□□□□ -0.12
COL7A1-201ENST00000328333 ENTPD3O75355 529 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 LACTB2Q53H82 288 aaPredicted RBP14.33□□□□□ -0.12
COL7A1-201ENST00000328333 KCTD15Q96SI1 283 aaPredicted RBP14.33□□□□□ -0.12
COL7A1-201ENST00000328333 ZNF670Q9BS34 389 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 POLR1EQ9GZS1 481 aaKnown RBP14.33□□□□□ -0.12
COL7A1-201ENST00000328333 DNAJC11Q9NVH1 559 aa14.33□□□□□ -0.12
COL7A1-201ENST00000328333 ABI2Q9NYB9 513 aaPredicted RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 126.4 ms