RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 TMEM115Q12893 351 aaPredicted RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 ITGADQ13349 1161 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 EIF4A2Q14240 407 aaKnown RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 ERV3-1Q14264 604 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 SHBQ15464 509 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 SOWAHAQ2M3V2 549 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 ZNF284Q2VY69 593 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 DPCR1Q3MIW9 517 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 ODF3L2Q3SX64 289 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 DAB2IPQ5VWQ8 1189 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 HAUS3Q68CZ6 603 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 Q6ZSV7 163 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 NEK10Q6ZWH5 1172 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 ZNF367Q7RTV3 350 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 TECPR1Q7Z6L1 1165 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 PXKQ7Z7A4 578 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 DHX40Q8IX18 779 aaKnown RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 MB21D2Q8IYB1 491 aaPredicted RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 CNTROBQ8N137 903 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 ZCCHC9Q8N567 271 aaKnown RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 NGEFQ8N5V2 710 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 PARP16Q8N5Y8 322 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 GTF3C6Q969F1 213 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 INTS12Q96CB8 462 aaKnown RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 APOLD1Q96LR9 279 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 SLITRK1Q96PX8 696 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 TREX2Q9BQ50 279 aaPredicted RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 GLIS2Q9BZE0 524 aaPredicted RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 MUC13Q9H3R2 512 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 BPIFA1Q9NP55 256 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 LIMA1Q9UHB6 759 aaKnown RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 HAO1Q9UJM8 370 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 INTS6Q9UL03 887 aaKnown RBP3.48□□□□□ -1.85
HMGB1-201ENST00000326004 FZD10Q9ULW2 581 aa3.48□□□□□ -1.85
HMGB1-201ENST00000326004 FAM90A10PA6NDY2 464 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 OR6C75A6NL08 312 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 KDM4EB2RXH2 506 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-201ENST00000326004 I6L893 689 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-201ENST00000326004 TNFRSF13BO14836 293 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-201ENST00000326004 BCAT2O15382 392 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-201ENST00000326004 ASAP2O43150 1006 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 SEC14L5O43304 696 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 RGS14O43566 566 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 LIASO43766 372 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 PAGE4O60829 102 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 ZBED4O75132 1171 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 RGS11O94810 467 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 BMP15O95972 392 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 LCATP04180 440 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 MMP2P08253 660 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 CBSLP0DN79 551 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 ACADMP11310 421 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 NAGAP17050 411 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 AGAP20933 346 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 GPTP24298 496 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 HOXD3P31249 432 aaPredicted RBP3.47□□□□□ -1.85
HMGB1-201ENST00000326004 ICAM3P32942 547 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 CBSP35520 551 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 THPOP40225 353 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 CLNS1AP54105 237 aaKnown RBP3.47□□□□□ -1.85
HMGB1-201ENST00000326004 LMOD3Q0VAK6 560 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 GRIK3Q13003 919 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 TRAF1Q13077 416 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 MAMLD1Q13495 774 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 OLIG2Q13516 323 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 FSCBQ5H9T9 825 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 FNBP1LQ5T0N5 605 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 SNX30Q5VWJ9 437 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 LRRC8EQ6NSJ5 796 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 KLHL24Q6TFL4 600 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 TDRPQ86YL5 185 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 ANKRD52Q8NB46 1076 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 SCCPDHQ8NBX0 429 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 BEST2Q8NFU1 509 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 KCNG4Q8TDN1 519 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 ARHGEF2Q92974 986 aaKnown RBP3.47□□□□□ -1.85
HMGB1-201ENST00000326004 TIGD1Q96MW7 591 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 SF3B5Q9BWJ5 86 aaKnown RBP3.47□□□□□ -1.85
HMGB1-201ENST00000326004 DCLK3Q9C098 648 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 MAGEE1Q9HCI5 957 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 CYSLTR2Q9NS75 346 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 SLC6A13Q9NSD5 602 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 TBC1D22BQ9NU19 505 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 TMEM51Q9NW97 253 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 HIF1ANQ9NWT6 349 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 PLK2Q9NYY3 685 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 EHD2Q9NZN4 543 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 AAR2Q9Y312 384 aaKnown RBP3.47□□□□□ -1.85
HMGB1-201ENST00000326004 PAM16Q9Y3D7 125 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 NFE2L3Q9Y4A8 694 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 PSAT1Q9Y617 370 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 KCNE2Q9Y6J6 123 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 CAPN7Q9Y6W3 813 aa3.47□□□□□ -1.85
HMGB1-201ENST00000326004 RUSC2Q8N2Y8 1516 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 CD8B2A6NJW9 211 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 BECN2A8MW95 431 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 WNT9BO14905 357 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 ITM2AO43736 263 aa3.46□□□□□ -1.86
HMGB1-201ENST00000326004 RNASEH2AO75792 299 aaKnown RBP3.46□□□□□ -1.86
HMGB1-201ENST00000326004 SEC31AO94979 1220 aaKnown RBP3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms