RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 SLC4A11Q8NBS3 891 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 MTFMTQ96DP5 389 aaKnown RBP12.92□□□□□ -0.34
COL3A1-201ENST00000304636 RCOR3Q9P2K3 495 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-201ENST00000304636 RPS6KB2Q9UBS0 482 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 TMEM59LQ9UK28 342 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 VWA7Q9Y334 891 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 LRCH4O75427 683 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 OTCP00480 354 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 IDH3AP50213 366 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 SLC18A1P54219 525 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 ZYG11AQ6WRX3 759 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 PLEKHH3Q7Z736 793 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 SPPL2CQ8IUH8 684 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 CYP4X1Q8N118 509 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 CDYL2Q8N8U2 506 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 TRIM39Q9HCM9 518 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 SIX2Q9NPC8 291 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 POMPQ9Y244 141 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 RECQL4O94761 1208 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 YWHAQP27348 245 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 RPL38P63173 70 aaKnown RBP12.91□□□□□ -0.34
COL3A1-201ENST00000304636 CBX3Q13185 183 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 BOP1Q14137 746 aaKnown RBP12.91□□□□□ -0.34
COL3A1-201ENST00000304636 SLC9A5Q14940 896 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 ZSWIM7Q19AV6 140 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 PLD5Q8N7P1 536 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 SLCO2A1Q92959 643 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 ST6GALNAC4Q9H4F1 302 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 POLE3Q9NRF9 147 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 PPP2R3BQ9Y5P8 575 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 ANKRD26Q9UPS8 1709 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 PLIN3O60664 434 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 TYMPP19971 482 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 RALGDSQ12967 914 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 UGCGQ16739 394 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 VWA5B1Q5TIE3 1220 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 C6orf89Q6UWU4 347 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 PAGE2Q7Z2X7 111 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 ZNF467Q7Z7K2 595 aaPredicted RBP12.91□□□□□ -0.34
COL3A1-201ENST00000304636 LGI2Q8N0V4 545 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 DNAJB3Q8WWF6 145 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 MRPS31Q92665 395 aaKnown RBP12.91□□□□□ -0.34
COL3A1-201ENST00000304636 SAMHD1Q9Y3Z3 626 aaKnown RBP12.91□□□□□ -0.34
COL3A1-201ENST00000304636 LRG1P02750 347 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 UMPSP11172 480 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 CRATP43155 626 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 WDR4P57081 412 aaKnown RBP12.91□□□□□ -0.34
COL3A1-201ENST00000304636 CNTN2Q02246 1040 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 ADGRE1Q14246 886 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 ARHGAP15Q53QZ3 475 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 ZNF544Q6NX49 715 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 NACC2Q96BF6 587 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 SDCBP2Q9H190 292 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 KLHL31Q9H511 634 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 ARMC7Q9H6L4 198 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 CXorf21Q9HAI6 301 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 ZSCAN32Q9NX65 697 aa12.91□□□□□ -0.34
COL3A1-201ENST00000304636 IPO13O94829 963 aaKnown RBP12.9□□□□□ -0.34
COL3A1-201ENST00000304636 C4BPAP04003 597 aaKnown RBP12.9□□□□□ -0.34
COL3A1-201ENST00000304636 BDNFP23560 247 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 TGM3Q08188 693 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 PLCL1Q15111 1095 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 RALGPS1Q5JS13 557 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 ATAD3BQ5T9A4 648 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 STRADAQ7RTN6 431 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 OR52K2Q8NGK3 314 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 NELL1Q92832 810 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 PCDHB12Q9Y5F1 795 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 PPP1R11O60927 126 aaPredicted RBP12.9□□□□□ -0.34
COL3A1-201ENST00000304636 CHRNB2P17787 502 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 OLR1P78380 273 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 STX4Q12846 297 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 ITGA7Q13683 1181 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 CPSF7Q8N684 471 aaKnown RBP12.9□□□□□ -0.34
COL3A1-201ENST00000304636 SENP8Q96LD8 212 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 VPS35Q96QK1 796 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 PCDHGC3Q9UN70 934 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 KCNU1A8MYU2 1149 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 SLC22A2O15244 555 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 TMCC2O75069 709 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 PSEN1P49768 467 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 GALNT18Q6P9A2 607 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 UBR7Q8N806 425 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 RTL3Q8N8U3 475 aaKnown RBP12.9□□□□□ -0.34
COL3A1-201ENST00000304636 PNPT1Q8TCS8 783 aaKnown RBP12.9□□□□□ -0.34
COL3A1-201ENST00000304636 ASZ1Q8WWH4 475 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 CENPNQ96H22 339 aaPredicted RBP12.9□□□□□ -0.34
COL3A1-201ENST00000304636 RMI1Q9H9A7 625 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 TRMT13Q9NUP7 481 aaKnown RBP12.9□□□□□ -0.34
COL3A1-201ENST00000304636 GNPTGQ9UJJ9 305 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 CSNK2BP67870 215 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 EML3Q32P44 896 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 ARMC12Q5T9G4 340 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 OR2T12Q8NG77 320 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 AP3S1Q92572 193 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 MAGEB10Q96LZ2 347 aaPredicted RBP12.9□□□□□ -0.34
COL3A1-201ENST00000304636 QKIQ96PU8 341 aaKnown RBP eCLIP12.9□□□□□ -0.34
COL3A1-201ENST00000304636 DCCP43146 1447 aa12.9□□□□□ -0.34
COL3A1-201ENST00000304636 GPIP06744 558 aa12.9□□□□□ -0.35
COL3A1-201ENST00000304636 RPS9P46781 194 aaKnown RBP12.9□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms