RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 MAP3K21Q5TCX8 1036 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 IRGCQ6NXR0 463 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 TMEM207Q6UWW9 146 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 KIAA0408Q6ZU52 694 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 DHDDSQ86SQ9 333 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 CALML6Q8TD86 181 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 BLOC1S5Q8TDH9 187 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 USP13Q92995 863 aaPredicted RBP18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 CNDP1Q96KN2 507 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 ECSITQ9BQ95 431 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 VPS45Q9NRW7 570 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 SQORQ9Y6N5 450 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 A8MT66 165 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 LTA4HP09960 611 aaKnown RBP18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 ATXN3P54252 364 aaPredicted RBP18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 PKNOX1P55347 436 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 MRPS35P82673 323 aaKnown RBP18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 CDC16Q13042 620 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 GPR158Q5T848 1215 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 NADSYN1Q6IA69 706 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 AAGABQ6PD74 315 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 ABI1Q8IZP0 508 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 KYQ8NBH2 561 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 TBATAQ96M53 351 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 CDRT15Q96T59 188 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 PPP1R12CQ9BZL4 782 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 TLR8Q9NR97 1041 aaKnown RBP18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 VWA7Q9Y334 891 aa18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 COPG1Q9Y678 874 aaKnown RBP18.46■□□□□ 0.55
SHKBP1-201ENST00000291842 MROH6A6NGR9 719 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 SLCO1B7G3V0H7 640 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 STX16-NPEPL1H3BU86 382 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 ATXN1LP0C7T5 689 aaKnown RBP18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 ENO3P13929 434 aaPredicted RBP18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 KCNC1P48547 511 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 SULT2A1Q06520 285 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 DUSP4Q13115 394 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 LBRQ14739 615 aaKnown RBP18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 AGAP9Q5VTM2 703 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 PIWIL4Q7Z3Z4 852 aaKnown RBP18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 TEX26Q8N6G2 289 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 PDCD6IPQ8WUM4 868 aaKnown RBP18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 ZNF385DQ9H6B1 395 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 ALG9Q9H6U8 611 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 FNIP2Q9P278 1114 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 SUFUQ9UMX1 484 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 PLXNA3P51805 1871 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 A0A0D9SEW6 157 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 MTMR11A4FU01 709 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 SDHDO14521 159 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 SYN3O14994 580 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 LDB2O43679 373 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 NPHS1O60500 1241 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 VNN2O95498 520 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 LINGO3P0C6S8 592 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 UBTFL6P0CB48 400 aaPredicted RBP18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 RAG1P15918 1043 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 DNAJB1P25685 340 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 MAGEA11P43364 429 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 CLCN5P51795 746 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 SERINC3Q13530 473 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 IL31Q6EBC2 164 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 RP9Q8TA86 221 aaKnown RBP18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 RANBP9Q96S59 729 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 IL37Q9NZH6 218 aa18.45■□□□□ 0.54
SHKBP1-201ENST00000291842 IPO13O94829 963 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 S1PR4O95977 384 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 KPNA2P52292 529 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 HK2P52789 917 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 PFKPQ01813 784 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 CPSF7Q8N684 471 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 EXT2Q93063 718 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 IFT43Q96FT9 208 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 NPAS2Q99743 824 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 DDX50Q9BQ39 737 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 ZBTB26Q9HCK0 441 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 TLR5O60602 858 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 MT-CO1P00395 513 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 PEX2P28328 305 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 THOP1P52888 689 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 RTP2Q5QGT7 225 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 TAS1R1Q7RTX1 841 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 TMEM173Q86WV6 379 aaPredicted RBP18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 LGI2Q8N0V4 545 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 RYBPQ8N488 228 aaPredicted RBP18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 SNX31Q8N9S9 440 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 OR52K2Q8NGK3 314 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 OR13C4Q8NGS5 318 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 DNAJC1Q96KC8 554 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 CCDC28BQ9BUN5 200 aa18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.44■□□□□ 0.54
SHKBP1-201ENST00000291842 LOC285095A0A1B0GVY8 99 aa18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 FAM92AA1XBS5 289 aa18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 DRGXA6NNA5 263 aa18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 SLC7A4O43246 635 aa18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 PRSS56P0CW18 603 aa18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 DPP6P42658 865 aa18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 DNAJB13P59910 316 aa18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 C1QTNF8P60827 252 aa18.43■□□□□ 0.54
SHKBP1-201ENST00000291842 IL10RBQ08334 325 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms