RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 RGL4Q8IZJ4 473 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 TBC1D3Q8IZP1 549 aaPredicted RBP9.25□□□□□ -0.93
HMGN1-201ENST00000288344 MFSD2AQ8NA29 543 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 BAHD1Q8TBE0 780 aaPredicted RBP9.25□□□□□ -0.93
HMGN1-201ENST00000288344 GRIN3AQ8TCU5 1115 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 PIH1D2Q8WWB5 315 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 ALG3Q92685 438 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 NUDCD1Q96RS6 583 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 LGMNQ99538 433 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 HINFPQ9BQA5 517 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 EDEM2Q9BV94 578 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 NUSAP1Q9BXS6 441 aaKnown RBP9.25□□□□□ -0.93
HMGN1-201ENST00000288344 CALN1Q9BXU9 219 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 ZDHHC6Q9H6R6 413 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 ERVMER34-1Q9H9K5 563 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 SEPT3Q9UH03 358 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 AMACRQ9UHK6 382 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 WASF3Q9UPY6 502 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 EFR3BQ9Y2G0 817 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 ANKRD6Q9Y2G4 727 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 SNX11Q9Y5W9 270 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 HS3ST3A1Q9Y663 406 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 DMXL2Q8TDJ6 3036 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 CELSR3Q9NYQ7 3312 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 hCG_1818297A0A087WSY0 165 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 DCDC2BA2VCK2 349 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 CFAP69A5D8W1 941 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 FAM47DPA6NHR8 397 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 PRAMEF26H0Y7S4 382 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 KCNK3O14649 394 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 DDX3YO15523 660 aaKnown RBP9.24□□□□□ -0.93
HMGN1-201ENST00000288344 TSPAN6O43657 245 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 MAP3K6O95382 1288 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 IGSF6O95976 241 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 PAK4O96013 591 aaPredicted RBP9.24□□□□□ -0.93
HMGN1-201ENST00000288344 GIMD1P0DJR0 217 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 KRT10P13645 584 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 GNSP15586 552 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 CSRP1P21291 193 aaKnown RBP9.24□□□□□ -0.93
HMGN1-201ENST00000288344 CD38P28907 300 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 PTPN7P35236 360 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 SERPINB6P35237 376 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 HSPA9P38646 679 aaKnown RBP9.24□□□□□ -0.93
HMGN1-201ENST00000288344 RENBPP51606 427 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 NXPH1P58417 271 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 AP1S1P61966 158 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 RPS21P63220 83 aaKnown RBP9.24□□□□□ -0.93
HMGN1-201ENST00000288344 IFI35P80217 286 aaPredicted RBP9.24□□□□□ -0.93
HMGN1-201ENST00000288344 SLC14A1Q13336 389 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 KRT81Q14533 505 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 GRM3Q14832 879 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 PPP2R5EQ16537 467 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 CDKN3Q16667 212 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 TMEM164Q5U3C3 297 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 MARC1Q5VT66 337 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 NAPEPLDQ6IQ20 393 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 KIAA1161Q6NSJ0 714 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 NPNTQ6UXI9 565 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 SPOCD1Q6ZMY3 1216 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 GCNT7Q6ZNI0 430 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 TTC7BQ86TV6 843 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 PRPF39Q86UA1 669 aaKnown RBP9.24□□□□□ -0.93
HMGN1-201ENST00000288344 ZSCAN30Q86W11 494 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 BPHLQ86WA6 291 aaPredicted RBP9.24□□□□□ -0.93
HMGN1-201ENST00000288344 RCOR2Q8IZ40 523 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 SLC22A18ASQ8N1D0 253 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 MINDY1Q8N5J2 469 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 C12orf50Q8NA57 414 aaPredicted RBP9.24□□□□□ -0.93
HMGN1-201ENST00000288344 EXD1Q8NHP7 514 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 GANCQ8TET4 914 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 FEM1CQ96JP0 617 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 MCCC1Q96RQ3 725 aaPredicted RBP9.24□□□□□ -0.93
HMGN1-201ENST00000288344 DESI2Q9BSY9 194 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 SLC17A9Q9BYT1 436 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 CAAP1Q9H8G2 361 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 TMEM9BQ9NQ34 198 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 DDX56Q9NY93 547 aaKnown RBP9.24□□□□□ -0.93
HMGN1-201ENST00000288344 SAE1Q9UBE0 346 aaPredicted RBP9.24□□□□□ -0.93
HMGN1-201ENST00000288344 ITM2BQ9Y287 266 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 PCDHGB2Q9Y5G2 931 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 TP53BP1Q12888 1972 aaPredicted RBP9.24□□□□□ -0.93
HMGN1-201ENST00000288344 KNTC1P50748 2209 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 CEP295Q9C0D2 2601 aa9.24□□□□□ -0.93
HMGN1-201ENST00000288344 LAMA5O15230 3695 aa9.23□□□□□ -0.93
HMGN1-201ENST00000288344 ZZEF1O43149 2961 aa9.23□□□□□ -0.93
HMGN1-201ENST00000288344 A0A1B0GTQ1 180 aa9.23□□□□□ -0.93
HMGN1-201ENST00000288344 LRRD1A4D1F6 860 aa9.23□□□□□ -0.93
HMGN1-201ENST00000288344 POM121BA6NF01 834 aa9.23□□□□□ -0.93
HMGN1-201ENST00000288344 IGLON5A6NGN9 336 aa9.23□□□□□ -0.93
HMGN1-201ENST00000288344 MEI4A8MW99 385 aa9.23□□□□□ -0.93
HMGN1-201ENST00000288344 H0Y8X5 98 aa9.23□□□□□ -0.93
HMGN1-201ENST00000288344 TLR4O00206 839 aa9.23□□□□□ -0.93
HMGN1-201ENST00000288344 PCDHGA12O60330 932 aa9.23□□□□□ -0.93
HMGN1-201ENST00000288344 SOCS5O75159 536 aa9.23□□□□□ -0.93
HMGN1-201ENST00000288344 DKK1O94907 266 aa9.23□□□□□ -0.93
HMGN1-201ENST00000288344 ZRANB2O95218 330 aaKnown RBP eCLIP9.23□□□□□ -0.936e-7■■□□□ 12.1
HMGN1-201ENST00000288344 CFIP05156 583 aa9.23□□□□□ -0.93
HMGN1-201ENST00000288344 SYPP08247 313 aa9.23□□□□□ -0.93
HMGN1-201ENST00000288344 PDHA1P08559 390 aa9.23□□□□□ -0.93
HMGN1-201ENST00000288344 PYGMP11217 842 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms