RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 GRM3Q14832 879 aa16.81■□□□□ 0.28
PHRF1-201ENST00000264555 METTL21CQ5VZV1 264 aa16.81■□□□□ 0.28
PHRF1-201ENST00000264555 RHBDF2Q6PJF5 856 aa16.81■□□□□ 0.28
PHRF1-201ENST00000264555 CUZD1Q86UP6 607 aa16.81■□□□□ 0.28
PHRF1-201ENST00000264555 SLC44A2Q8IWA5 706 aaPredicted RBP16.81■□□□□ 0.28
PHRF1-201ENST00000264555 ATG16L2Q8NAA4 619 aa16.81■□□□□ 0.28
PHRF1-201ENST00000264555 PPP3R2Q96LZ3 170 aa16.81■□□□□ 0.28
PHRF1-201ENST00000264555 TEKT5Q96M29 485 aa16.81■□□□□ 0.28
PHRF1-201ENST00000264555 SEMA6AQ9H2E6 1030 aa16.81■□□□□ 0.28
PHRF1-201ENST00000264555 FAM53CQ9NYF3 392 aa16.81■□□□□ 0.28
PHRF1-201ENST00000264555 PCDHB9Q9Y5E1 797 aa16.81■□□□□ 0.28
PHRF1-201ENST00000264555 PTPRJQ12913 1337 aa16.81■□□□□ 0.28
PHRF1-201ENST00000264555 MAGEC1O60732 1142 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 METTL18O95568 372 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 TACR2P21452 398 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 SPATA22Q8NHS9 363 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 PCYT2Q99447 389 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 ANAPC2Q9UJX6 822 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 SNX6Q9UNH7 406 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 MYRFQ9Y2G1 1151 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 ZNF510Q9Y2H8 683 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 INCA1Q0VD86 236 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 ZNF792Q3KQV3 632 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 OLFML2BQ68BL8 750 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 FSTL4Q6MZW2 842 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 DNAJC14Q6Y2X3 702 aaPredicted RBP16.8■□□□□ 0.28
PHRF1-201ENST00000264555 SLC35F5Q8WV83 523 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 SELENOMQ8WWX9 145 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 ZNF229Q9UJW7 825 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 CHKBQ9Y259 395 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 MYH6P13533 1939 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 IPO13O94829 963 aaKnown RBP16.8■□□□□ 0.28
PHRF1-201ENST00000264555 OTCP00480 354 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 MPSTP25325 297 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 CDH5P33151 784 aaPredicted RBP16.8■□□□□ 0.28
PHRF1-201ENST00000264555 ACSM2AQ08AH3 577 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 ACSM2BQ68CK6 577 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 CORO1BQ9BR76 489 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 OSGEPL1Q9H4B0 414 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 NDST3O95803 873 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 ADH1AP07327 375 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 FSTL1Q12841 308 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 ZYG11AQ6WRX3 759 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 KCTD13Q8WZ19 329 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 SIX4Q9UIU6 781 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 PADI4Q9UM07 663 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 INVSQ9Y283 1065 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 ULK1O75385 1050 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 HNRNPDQ14103 355 aaKnown RBP16.8■□□□□ 0.28
PHRF1-201ENST00000264555 TIGD5Q53EQ6 642 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 TMEM26Q6ZUK4 368 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 CYP4Z1Q86W10 505 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 CAMK1DQ8IU85 385 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 SLC7A5P2Q9GIP4 190 aa16.8■□□□□ 0.28
PHRF1-201ENST00000264555 RUNX1T1Q06455 604 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 KLF10Q13118 480 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 SYT12Q8IV01 421 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.79■□□□□ 0.282e-7■■■■■ 27.8
PHRF1-201ENST00000264555 PHACTR4Q8IZ21 702 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 NXNL1Q96CM4 212 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 PTCD3Q96EY7 689 aaKnown RBP16.79■□□□□ 0.28
PHRF1-201ENST00000264555 BTRCQ9Y297 605 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 C2orf71A6NGG8 1288 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 MAN1A2O60476 641 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 IDO1P14902 403 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 OLFML1Q6UWY5 402 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 STK32CQ86UX6 486 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 RBFAQ8N0V3 343 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 TMEM199Q8N511 208 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 DHRSXQ8N5I4 330 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 CDYL2Q8N8U2 506 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 GRIN3AQ8TCU5 1115 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 ATL1Q8WXF7 558 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 NMD3Q96D46 503 aaKnown RBP16.79■□□□□ 0.28
PHRF1-201ENST00000264555 LINGO1Q96FE5 620 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 CCDC28BQ9BUN5 200 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 EXOSC4Q9NPD3 245 aaKnown RBP16.79■□□□□ 0.28
PHRF1-201ENST00000264555 GDAP2Q9NXN4 497 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 C6orf203Q9P0P8 240 aaPredicted RBP16.79■□□□□ 0.28
PHRF1-201ENST00000264555 SPACA6W5XKT8 324 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 IRS2Q9Y4H2 1338 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 C4BP0C0L5 1744 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 MYH3P11055 1940 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 MYH13Q9UKX3 1938 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 MAPKAPK2P49137 400 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 IRF8Q02556 426 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 FNDC3BQ53EP0 1204 aaKnown RBP16.79■□□□□ 0.28
PHRF1-201ENST00000264555 SMYD5Q6GMV2 418 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 FBXL19Q6PCT2 694 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 WDR55Q9H6Y2 383 aaPredicted RBP16.79■□□□□ 0.28
PHRF1-201ENST00000264555 SNX10Q9Y5X0 201 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 TMEM88BA6NKF7 163 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 SMNDC1O75940 238 aaKnown RBP eCLIP16.79■□□□□ 0.286e-7■■■■□ 25.7
PHRF1-201ENST00000264555 RPN2P04844 631 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 HNRNPCP07910 306 aaKnown RBP eCLIP16.79■□□□□ 0.284e-7■■■■□ 23.1
PHRF1-201ENST00000264555 KCNE1P15382 129 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 PBX3P40426 434 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 GRIA3P42263 894 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 SLC18A1P54219 525 aa16.79■□□□□ 0.28
PHRF1-201ENST00000264555 TRMT10BQ6PF06 316 aaKnown RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms