RNA–Protein interactions for RNA: ENST00000261037.7

COL8A1-201, Transcript of collagen type VIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL8A1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-201ENST00000261037 LRCH1Q9Y2L9 728 aa12.16□□□□□ -0.46
COL8A1-201ENST00000261037 MLYCDO95822 493 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 C3P01024 1663 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 PRKAR2AP13861 404 aaKnown RBP12.15□□□□□ -0.46
COL8A1-201ENST00000261037 MYOM1P52179 1685 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 RHBDL3P58872 404 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 DMPKQ09013 629 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 CPSF6Q16630 551 aaKnown RBP eCLIP12.15□□□□□ -0.46
COL8A1-201ENST00000261037 CLHC1Q8NHS4 586 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 ACAT2Q9BWD1 397 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 ELL3Q9HB65 397 aaPredicted RBP12.15□□□□□ -0.46
COL8A1-201ENST00000261037 RPRD1BQ9NQG5 326 aaKnown RBP12.15□□□□□ -0.46
COL8A1-201ENST00000261037 CLN6Q9NWW5 311 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 XPR1Q9UBH6 696 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 MRPS7Q9Y2R9 242 aaKnown RBP12.15□□□□□ -0.46
COL8A1-201ENST00000261037 OPLAHO14841 1288 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 MDM4O15151 490 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 ULK1O75385 1050 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 BUD31P41223 144 aaPredicted RBP12.15□□□□□ -0.46
COL8A1-201ENST00000261037 MAPKAPK2P49137 400 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 SMAD3P84022 425 aaKnown RBP12.15□□□□□ -0.46
COL8A1-201ENST00000261037 ITGB3BPQ13352 177 aaPredicted RBP12.15□□□□□ -0.46
COL8A1-201ENST00000261037 NDUFAF6Q330K2 333 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 NET1Q7Z628 596 aaPredicted RBP12.15□□□□□ -0.46
COL8A1-201ENST00000261037 ANKS1BQ7Z6G8 1248 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 PACS2Q86VP3 889 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 DENND6AQ8IWF6 608 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 FBXL16Q8N461 479 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 JOSD2Q8TAC2 188 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 HDAC10Q969S8 669 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 DNAJC19Q96DA6 116 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 OMA1Q96E52 524 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 SLC47A1Q96FL8 570 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 PNPOQ9NVS9 261 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 ZMYND8Q9ULU4 1186 aaPredicted RBP12.15□□□□□ -0.46
COL8A1-201ENST00000261037 A0A1W2PPM1 405 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 SLC9A3R1O14745 358 aaPredicted RBP12.15□□□□□ -0.46
COL8A1-201ENST00000261037 CCL16O15467 120 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 KRT36O76013 467 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 CST1P01037 141 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 ZNF24P17028 368 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 IL12RB1P42701 662 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 SKP1P63208 163 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 NOMO3P69849 1222 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 FAM171BQ6P995 826 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 LRRC55Q6ZSA7 311 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 OR4L1Q8NH43 312 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 RCN3Q96D15 328 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 COQ7Q99807 217 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 B3GNT5Q9BYG0 378 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 SPAG4Q9NPE6 437 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 LEF1Q9UJU2 399 aaPredicted RBP12.15□□□□□ -0.46
COL8A1-201ENST00000261037 CNTNAP1P78357 1384 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 IDH3BO43837 385 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 CABYRO75952 493 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 CCNYL3P0C7X3 344 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 NELFEP18615 380 aaKnown RBP12.15□□□□□ -0.46
COL8A1-201ENST00000261037 PAX7P23759 505 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 ZNF135P52742 658 aaPredicted RBP12.15□□□□□ -0.46
COL8A1-201ENST00000261037 ITGA1P56199 1179 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 MYBPC1Q00872 1141 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 BST1Q10588 318 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 EPS8Q12929 822 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 MAP2K5Q13163 448 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 FAM35AQ86V20 835 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 VGLL2Q8N8G2 317 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 RTL3Q8N8U3 475 aaKnown RBP12.15□□□□□ -0.46
COL8A1-201ENST00000261037 ZNF540Q8NDQ6 660 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 RAD51AP1Q96B01 352 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 GALNT8Q9NY28 637 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 PLK2Q9NYY3 685 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 PCYOX1Q9UHG3 505 aa12.15□□□□□ -0.46
COL8A1-201ENST00000261037 CSH1P0DML2 217 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 CSH2P0DML3 217 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 MYBL2P10244 700 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 CXCR2P25025 360 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 USP46P62068 366 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 NRG1Q02297 640 aaPredicted RBP12.14□□□□□ -0.47
COL8A1-201ENST00000261037 RGS1Q08116 209 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 FNBP1LQ5T0N5 605 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 CERCAMQ5T4B2 595 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 ARMC3Q5W041 872 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 AMIGO2Q86SJ2 522 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 ZBTB46Q86UZ6 589 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 SMYD1Q8NB12 490 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 NKX2-3Q8TAU0 364 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 MRPL57Q9BQC6 102 aaKnown RBP12.14□□□□□ -0.47
COL8A1-201ENST00000261037 NUAK2Q9H093 628 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 TMCO1Q9UM00 188 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 GTPBP1O00178 669 aaKnown RBP12.14□□□□□ -0.47
COL8A1-201ENST00000261037 ZBTB11O95625 1053 aaPredicted RBP12.14□□□□□ -0.47
COL8A1-201ENST00000261037 KLHL12Q53G59 568 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 INTS11Q5TA45 600 aaKnown RBP12.14□□□□□ -0.47
COL8A1-201ENST00000261037 CMC1Q7Z7K0 106 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 PHF13Q86YI8 300 aaPredicted RBP12.14□□□□□ -0.47
COL8A1-201ENST00000261037 NARS2Q96I59 477 aaKnown RBP12.14□□□□□ -0.47
COL8A1-201ENST00000261037 NPAS2Q99743 824 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 EGFL7Q9UHF1 273 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 CYP3A7-CYP3A51PA0A087WV96 503 aa12.14□□□□□ -0.47
COL8A1-201ENST00000261037 FFAR2O15552 330 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms