RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 GMCL1Q96IK5 515 aa2.39□□□□□ -2.03
VPS35-212ENST00000640313 C1QTNF2Q9BXJ5 285 aa2.39□□□□□ -2.03
VPS35-212ENST00000640313 MBIPQ9NS73 344 aa2.39□□□□□ -2.03
VPS35-212ENST00000640313 FAM217BQ9NTX9 383 aaPredicted RBP2.39□□□□□ -2.03
VPS35-212ENST00000640313 IRF6O14896 467 aa2.38□□□□□ -2.03
VPS35-212ENST00000640313 F12P00748 615 aaPredicted RBP2.38□□□□□ -2.03
VPS35-212ENST00000640313 CTHP32929 405 aa2.38□□□□□ -2.03
VPS35-212ENST00000640313 MAP2K5Q13163 448 aa2.38□□□□□ -2.03
VPS35-212ENST00000640313 TRMT44Q8IYL2 757 aaKnown RBP2.38□□□□□ -2.03
VPS35-212ENST00000640313 CCDC116Q8IYX3 515 aa2.38□□□□□ -2.03
VPS35-212ENST00000640313 NEDD1Q8NHV4 660 aa2.38□□□□□ -2.03
VPS35-212ENST00000640313 IGF1RP08069 1367 aa2.37□□□□□ -2.03
VPS35-212ENST00000640313 FSHRP23945 695 aa2.37□□□□□ -2.03
VPS35-212ENST00000640313 ITGB7P26010 798 aa2.37□□□□□ -2.03
VPS35-212ENST00000640313 CLCN1P35523 988 aa2.37□□□□□ -2.03
VPS35-212ENST00000640313 GJA5P36382 358 aa2.37□□□□□ -2.03
VPS35-212ENST00000640313 CTSOP43234 321 aaPredicted RBP2.37□□□□□ -2.03
VPS35-212ENST00000640313 CBLBQ13191 982 aa2.37□□□□□ -2.03
VPS35-212ENST00000640313 MTMR2Q13614 643 aa2.37□□□□□ -2.03
VPS35-212ENST00000640313 AGERQ15109 404 aa2.37□□□□□ -2.03
VPS35-212ENST00000640313 VASH1Q7L8A9 365 aaPredicted RBP2.37□□□□□ -2.03
VPS35-212ENST00000640313 KRTAP19-1Q8IUB9 90 aa2.37□□□□□ -2.03
VPS35-212ENST00000640313 SPIRE2Q8WWL2 714 aa2.37□□□□□ -2.03
VPS35-212ENST00000640313 ACDQ96AP0 544 aa2.37□□□□□ -2.03
VPS35-212ENST00000640313 GPCPD1Q9NPB8 672 aa2.37□□□□□ -2.03
VPS35-212ENST00000640313 PGPEP1Q9NXJ5 209 aa2.37□□□□□ -2.03
VPS35-212ENST00000640313 OIP5O43482 229 aa2.36□□□□□ -2.03
VPS35-212ENST00000640313 NDUFV2P19404 249 aa2.36□□□□□ -2.03
VPS35-212ENST00000640313 COL8A1P27658 744 aa2.36□□□□□ -2.03
VPS35-212ENST00000640313 PPP1R26Q5T8A7 1209 aaPredicted RBP2.36□□□□□ -2.03
VPS35-212ENST00000640313 GPIHBP1Q8IV16 184 aa2.36□□□□□ -2.03
VPS35-212ENST00000640313 ARMC2Q8NEN0 867 aa2.36□□□□□ -2.03
VPS35-212ENST00000640313 RNF217Q8TC41 542 aa2.36□□□□□ -2.03
VPS35-212ENST00000640313 TSHZ2Q9NRE2 1034 aa2.36□□□□□ -2.03
VPS35-212ENST00000640313 CUEDC1Q9NWM3 386 aaPredicted RBP2.36□□□□□ -2.03
VPS35-212ENST00000640313 MINK1Q8N4C8 1332 aaPredicted RBP2.36□□□□□ -2.03
VPS35-212ENST00000640313 MOXD2PA6NHM9 499 aa2.35□□□□□ -2.03
VPS35-212ENST00000640313 SNRPNP63162 240 aaKnown RBP2.35□□□□□ -2.03
VPS35-212ENST00000640313 ZMYM1Q5SVZ6 1142 aa2.35□□□□□ -2.03
VPS35-212ENST00000640313 FOXR1Q6PIV2 292 aa2.35□□□□□ -2.03
VPS35-212ENST00000640313 SH3BP5LQ7L8J4 393 aa2.35□□□□□ -2.03
VPS35-212ENST00000640313 TRIM22Q8IYM9 498 aa2.35□□□□□ -2.03
VPS35-212ENST00000640313 ZNF837Q96EG3 531 aaPredicted RBP2.35□□□□□ -2.03
VPS35-212ENST00000640313 INSM2Q96T92 566 aaPredicted RBP2.35□□□□□ -2.03
VPS35-212ENST00000640313 MAP10Q9P2G4 905 aa2.35□□□□□ -2.03
VPS35-212ENST00000640313 MKL2Q9ULH7 1088 aa2.35□□□□□ -2.03
VPS35-212ENST00000640313 C1QTNF9BB2RNN3 333 aa2.34□□□□□ -2.03
VPS35-212ENST00000640313 CFAP99D6REC4 459 aa2.34□□□□□ -2.03
VPS35-212ENST00000640313 DHX9Q08211 1270 aaKnown RBP2.34□□□□□ -2.03
VPS35-212ENST00000640313 DBN1Q16643 649 aa2.34□□□□□ -2.03
VPS35-212ENST00000640313 AGBL1Q96MI9 1066 aa2.34□□□□□ -2.03
VPS35-212ENST00000640313 SEMA6BQ9H3T3 888 aa2.34□□□□□ -2.03
VPS35-212ENST00000640313 GOLGA2P5Q9HBQ8 144 aa2.34□□□□□ -2.03
VPS35-212ENST00000640313 POLMQ9NP87 494 aaPredicted RBP2.34□□□□□ -2.03
VPS35-212ENST00000640313 H7C1W4 665 aa2.33□□□□□ -2.04
VPS35-212ENST00000640313 SSTR3P32745 418 aaPredicted RBP2.33□□□□□ -2.04
VPS35-212ENST00000640313 RELBQ01201 579 aa2.33□□□□□ -2.04
VPS35-212ENST00000640313 ERFEQ4G0M1 354 aa2.33□□□□□ -2.04
VPS35-212ENST00000640313 NBPF14Q5TI25 921 aa2.33□□□□□ -2.04
VPS35-212ENST00000640313 FOXD4L5Q5VV16 416 aaPredicted RBP2.33□□□□□ -2.04
VPS35-212ENST00000640313 LINC00114Q6XXX2 140 aa2.33□□□□□ -2.04
VPS35-212ENST00000640313 LYSMD3Q7Z3D4 306 aa2.33□□□□□ -2.04
VPS35-212ENST00000640313 CD163Q86VB7 1156 aa2.33□□□□□ -2.04
VPS35-212ENST00000640313 GPKOWQ92917 476 aaPredicted RBP eCLIP2.33□□□□□ -2.04
VPS35-212ENST00000640313 OXCT2Q9BYC2 517 aaPredicted RBP2.33□□□□□ -2.04
VPS35-212ENST00000640313 KRTAP4-7Q9BYR0 210 aa2.33□□□□□ -2.04
VPS35-212ENST00000640313 CDV3Q9UKY7 258 aaKnown RBP2.33□□□□□ -2.04
VPS35-212ENST00000640313 NSFL1CQ9UNZ2 370 aaKnown RBP2.33□□□□□ -2.04
VPS35-212ENST00000640313 SHISA8B8ZZ34 492 aa2.32□□□□□ -2.04
VPS35-212ENST00000640313 GPR25O00155 361 aa2.32□□□□□ -2.04
VPS35-212ENST00000640313 PIK3R2O00459 728 aa2.32□□□□□ -2.04
VPS35-212ENST00000640313 PER1O15534 1290 aaPredicted RBP2.32□□□□□ -2.04
VPS35-212ENST00000640313 HOXB4P17483 251 aaPredicted RBP2.32□□□□□ -2.04
VPS35-212ENST00000640313 MX2P20592 715 aa2.32□□□□□ -2.04
VPS35-212ENST00000640313 MAP2K3P46734 347 aa2.32□□□□□ -2.04
VPS35-212ENST00000640313 RNF144AP50876 292 aaPredicted RBP2.32□□□□□ -2.04
VPS35-212ENST00000640313 ARTNQ5T4W7 220 aa2.32□□□□□ -2.04
VPS35-212ENST00000640313 PRPF38BQ5VTL8 546 aaKnown RBP2.32□□□□□ -2.04
VPS35-212ENST00000640313 KRI1Q8N9T8 703 aaKnown RBP2.32□□□□□ -2.04
VPS35-212ENST00000640313 CCDC102AQ96A19 550 aa2.32□□□□□ -2.04
VPS35-212ENST00000640313 TRERF1Q96PN7 1200 aa2.32□□□□□ -2.04
VPS35-212ENST00000640313 KCTD15Q96SI1 283 aaPredicted RBP2.32□□□□□ -2.04
VPS35-212ENST00000640313 ZNF395Q9H8N7 513 aaPredicted RBP2.32□□□□□ -2.04
VPS35-212ENST00000640313 PCDHB15Q9Y5E8 787 aa2.32□□□□□ -2.04
VPS35-212ENST00000640313 MAGEB6P1A0A0J9YX57 407 aa2.31□□□□□ -2.04
VPS35-212ENST00000640313 ADH1AP07327 375 aa2.31□□□□□ -2.04
VPS35-212ENST00000640313 HRCP23327 699 aa2.31□□□□□ -2.04
VPS35-212ENST00000640313 PTGIRP43119 386 aa2.31□□□□□ -2.04
VPS35-212ENST00000640313 DOC2BQ14184 412 aa2.31□□□□□ -2.04
VPS35-212ENST00000640313 DIXDC1Q155Q3 683 aa2.31□□□□□ -2.04
VPS35-212ENST00000640313 FOXD4L6Q3SYB3 417 aaPredicted RBP2.31□□□□□ -2.04
VPS35-212ENST00000640313 LCE1DQ5T752 114 aa2.31□□□□□ -2.04
VPS35-212ENST00000640313 RSBN1LQ6PCB5 846 aaPredicted RBP2.31□□□□□ -2.04
VPS35-212ENST00000640313 FOXD4L3Q6VB84 417 aaPredicted RBP2.31□□□□□ -2.04
VPS35-212ENST00000640313 C1orf229Q6ZS94 237 aaPredicted RBP2.31□□□□□ -2.04
VPS35-212ENST00000640313 KDF1Q8NAX2 398 aaPredicted RBP2.31□□□□□ -2.04
VPS35-212ENST00000640313 GTPBP3Q969Y2 492 aaKnown RBP2.31□□□□□ -2.04
VPS35-212ENST00000640313 CFHR5Q9BXR6 569 aa2.31□□□□□ -2.04
VPS35-212ENST00000640313 SUV39H2Q9H5I1 410 aa2.31□□□□□ -2.04
VPS35-212ENST00000640313 ZBTB3Q9H5J0 574 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 168.9 ms