RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 MRPS9P82933 396 aaKnown RBP6.54□□□□□ -1.36
SCN1A-209ENST00000635750 OSCARQ8IYS5 282 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 LRRC45Q96CN5 670 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 ZNF652Q9Y2D9 606 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 SMARCA2P51531 1590 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 MTERF4Q7Z6M4 381 aaKnown RBP6.54□□□□□ -1.36
SCN1A-209ENST00000635750 GOLGA6L10A0A0M3HER8 536 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 NLRP6P59044 892 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 SPG7Q9UQ90 795 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 CBFA2T2O43439 604 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 USP5P45974 858 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 WDR78Q5VTH9 848 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 LRSAM1Q6UWE0 723 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 C16orf71Q8IYS4 520 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-209ENST00000635750 COG6Q9Y2V7 657 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 NUTM2GQ5VZR2 741 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 NUP133Q8WUM0 1156 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 FAM69CQ0P6D2 419 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 TAF4BQ92750 862 aa6.54□□□□□ -1.36
SCN1A-209ENST00000635750 CEP57L1Q8IYX8 460 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 FMNL2Q96PY5 1086 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 UBAC1Q9BSL1 405 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 FERP16591 822 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 TDO2P48775 406 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 HOOK3Q86VS8 718 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 PROSER2Q86WR7 435 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-209ENST00000635750 CRACR2BQ8N4Y2 399 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-209ENST00000635750 HMOX1P09601 288 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 MAP2K1Q02750 393 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-209ENST00000635750 GSE1Q14687 1217 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 CRBNQ96SW2 442 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 ERLIN1O75477 346 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 AAMPQ13685 434 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 CUL5Q93034 780 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 CEP131Q9UPN4 1083 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 ZPR1O75312 459 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 WASF1Q92558 559 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 IGHMBP2P38935 993 aaKnown RBP6.53□□□□□ -1.36
SCN1A-209ENST00000635750 KIAA1328Q86T90 577 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 PLCD3Q8N3E9 789 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 PIBF1Q8WXW3 757 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 BCL11BQ9C0K0 894 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-209ENST00000635750 LRRFIP2Q9Y608 721 aaKnown RBP6.53□□□□□ -1.36
SCN1A-209ENST00000635750 PSMD1Q99460 953 aa6.53□□□□□ -1.36
SCN1A-209ENST00000635750 RRBP1Q9P2E9 1410 aaKnown RBP6.52□□□□□ -1.36
SCN1A-209ENST00000635750 CDC45O75419 566 aa6.52□□□□□ -1.37
SCN1A-209ENST00000635750 SURF6O75683 361 aaKnown RBP6.52□□□□□ -1.37
SCN1A-209ENST00000635750 FAM43AQ8N2R8 423 aa6.52□□□□□ -1.37
SCN1A-209ENST00000635750 DDX54Q8TDD1 881 aaKnown RBP6.52□□□□□ -1.37
SCN1A-209ENST00000635750 SPATA24Q86W54 205 aa6.52□□□□□ -1.37
SCN1A-209ENST00000635750 TSNARE1Q96NA8 513 aa6.52□□□□□ -1.37
SCN1A-209ENST00000635750 ZWINTO95229 277 aa6.52□□□□□ -1.37
SCN1A-209ENST00000635750 VPS36Q86VN1 386 aa6.52□□□□□ -1.37
SCN1A-209ENST00000635750 CFAP57Q96MR6 1250 aa6.52□□□□□ -1.37
SCN1A-209ENST00000635750 LRP2BPQ9P2M1 347 aa6.52□□□□□ -1.37
SCN1A-209ENST00000635750 TSG101Q99816 390 aa6.52□□□□□ -1.37
SCN1A-209ENST00000635750 LRRCC1Q9C099 1032 aa6.52□□□□□ -1.37
SCN1A-209ENST00000635750 RAB3GAP2Q9H2M9 1393 aa6.52□□□□□ -1.37
SCN1A-209ENST00000635750 FGFR1OPO95684 399 aaKnown RBP6.51□□□□□ -1.37
SCN1A-209ENST00000635750 USP8P40818 1118 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 SLF2Q8IX21 1173 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 RGS22Q8NE09 1264 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 AEBP1Q8IUX7 1158 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 CEBPZQ03701 1054 aaKnown RBP6.51□□□□□ -1.37
SCN1A-209ENST00000635750 NFKBIBQ15653 356 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 SLU7O95391 586 aaKnown RBP6.51□□□□□ -1.37
SCN1A-209ENST00000635750 NOP2P46087 812 aaKnown RBP6.51□□□□□ -1.37
SCN1A-209ENST00000635750 PNISRQ8TF01 805 aaKnown RBP6.51□□□□□ -1.37
SCN1A-209ENST00000635750 CTNNA3Q9UI47 895 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 GNAI2P04899 355 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 CTNNA2P26232 953 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 ME1P48163 572 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 JPH4Q96JJ6 628 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 RAI14Q9P0K7 980 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 ST20-MTHFSA0A0A6YYL1 179 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 MBD3O95983 291 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 NASPP49321 788 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-209ENST00000635750 EIF5P55010 431 aaKnown RBP6.51□□□□□ -1.37
SCN1A-209ENST00000635750 FKBP4Q02790 459 aaKnown RBP eCLIP6.51□□□□□ -1.37
SCN1A-209ENST00000635750 TSPY26PQ9H489 355 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 LARP1Q6PKG0 1096 aaKnown RBP6.51□□□□□ -1.37
SCN1A-209ENST00000635750 CCDC148Q8NFR7 591 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 LNPKQ9C0E8 428 aa6.51□□□□□ -1.37
SCN1A-209ENST00000635750 GCOM1H8Y6P7 765 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-209ENST00000635750 STARD3NLO95772 234 aa6.5□□□□□ -1.37
SCN1A-209ENST00000635750 MYZAPP0CAP1 466 aa6.5□□□□□ -1.37
SCN1A-209ENST00000635750 RRP1P56182 461 aaKnown RBP6.5□□□□□ -1.37
SCN1A-209ENST00000635750 SREK1Q8WXA9 508 aaKnown RBP6.5□□□□□ -1.37
SCN1A-209ENST00000635750 RAB34Q9BZG1 259 aa6.5□□□□□ -1.37
SCN1A-209ENST00000635750 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.5□□□□□ -1.37
SCN1A-209ENST00000635750 CECR2Q9BXF3 1484 aa6.5□□□□□ -1.37
SCN1A-209ENST00000635750 POLR3DP05423 398 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-209ENST00000635750 PDE4AP27815 886 aa6.5□□□□□ -1.37
SCN1A-209ENST00000635750 L3MBTL2Q969R5 705 aa6.5□□□□□ -1.37
SCN1A-209ENST00000635750 GSTTP1A0A1W2PQM5 241 aa6.5□□□□□ -1.37
SCN1A-209ENST00000635750 IMMTQ16891 758 aaKnown RBP6.5□□□□□ -1.37
SCN1A-209ENST00000635750 CAVIN4Q5BKX8 364 aa6.5□□□□□ -1.37
SCN1A-209ENST00000635750 C22orf23Q9BZE7 217 aa6.5□□□□□ -1.37
SCN1A-209ENST00000635750 CYP46A1Q9Y6A2 500 aa6.5□□□□□ -1.37
SCN1A-209ENST00000635750 APAF1O14727 1248 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms