RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 RBM10P98175 930 aaKnown RBP17.47■□□□□ 0.39
LDB3-209ENST00000623056 ZSCAN23Q3MJ62 389 aa17.47■□□□□ 0.39
LDB3-209ENST00000623056 CAVIN1Q6NZI2 390 aaKnown RBP17.47■□□□□ 0.39
LDB3-209ENST00000623056 PUS7Q96PZ0 661 aaKnown RBP17.47■□□□□ 0.39
LDB3-209ENST00000623056 LMTK2Q8IWU2 1503 aa17.46■□□□□ 0.39
LDB3-209ENST00000623056 CDC45O75419 566 aa17.46■□□□□ 0.39
LDB3-209ENST00000623056 PPLO60437 1756 aa17.46■□□□□ 0.39
LDB3-209ENST00000623056 NCLP19338 710 aaKnown RBP17.46■□□□□ 0.38
LDB3-209ENST00000623056 CALD1Q05682 793 aaKnown RBP17.46■□□□□ 0.38
LDB3-209ENST00000623056 NOL7Q9UMY1 257 aaKnown RBP17.46■□□□□ 0.38
LDB3-209ENST00000623056 R3HCC1Q9Y3T6 440 aaKnown RBP17.46■□□□□ 0.38
LDB3-209ENST00000623056 NPATQ14207 1427 aa17.45■□□□□ 0.38
LDB3-209ENST00000623056 RBSNQ9H1K0 784 aa17.45■□□□□ 0.38
LDB3-209ENST00000623056 LMBRD1Q9NUN5 540 aa17.45■□□□□ 0.38
LDB3-209ENST00000623056 NUCB2P80303 420 aa17.44■□□□□ 0.38
LDB3-209ENST00000623056 PDLIM2Q96JY6 352 aa17.44■□□□□ 0.38
LDB3-209ENST00000623056 CABP2Q9NPB3 220 aa17.44■□□□□ 0.38
LDB3-209ENST00000623056 ZNF500O60304 480 aaPredicted RBP17.44■□□□□ 0.38
LDB3-209ENST00000623056 CYP2E1P05181 493 aaPredicted RBP17.44■□□□□ 0.38
LDB3-209ENST00000623056 BRPF1P55201 1214 aaPredicted RBP17.44■□□□□ 0.38
LDB3-209ENST00000623056 RABEP1Q15276 862 aa17.44■□□□□ 0.38
LDB3-209ENST00000623056 SIRT2Q8IXJ6 389 aa17.44■□□□□ 0.38
LDB3-209ENST00000623056 GGNBP2Q9H3C7 697 aa17.44■□□□□ 0.38
LDB3-209ENST00000623056 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.44■□□□□ 0.38
LDB3-209ENST00000623056 CFAP65Q6ZU64 1925 aaKnown RBP17.43■□□□□ 0.38
LDB3-209ENST00000623056 REREQ9P2R6 1566 aa17.43■□□□□ 0.38
LDB3-209ENST00000623056 ABCC3O15438 1527 aa17.43■□□□□ 0.38
LDB3-209ENST00000623056 CHMP4BQ9H444 224 aaKnown RBP17.43■□□□□ 0.38
LDB3-209ENST00000623056 A0A1W2PP64 1363 aa17.42■□□□□ 0.38
LDB3-209ENST00000623056 PIK3R4Q99570 1358 aa17.42■□□□□ 0.38
LDB3-209ENST00000623056 GSPT1P15170 499 aaKnown RBP17.42■□□□□ 0.38
LDB3-209ENST00000623056 FAM13BQ9NYF5 915 aa17.42■□□□□ 0.38
LDB3-209ENST00000623056 PRIM1P49642 420 aaKnown RBP17.41■□□□□ 0.38
LDB3-209ENST00000623056 PKP1Q13835 747 aa17.41■□□□□ 0.38
LDB3-209ENST00000623056 ZNF428Q96B54 188 aa17.41■□□□□ 0.38
LDB3-209ENST00000623056 XPCQ01831 940 aaPredicted RBP17.41■□□□□ 0.38
LDB3-209ENST00000623056 MAP7D2Q96T17 732 aa17.41■□□□□ 0.38
LDB3-209ENST00000623056 ARHGEF28Q8N1W1 1705 aaKnown RBP17.4■□□□□ 0.38
LDB3-209ENST00000623056 MRPL50Q8N5N7 158 aaKnown RBP17.4■□□□□ 0.38
LDB3-209ENST00000623056 PTCH1Q13635 1447 aa17.4■□□□□ 0.38
LDB3-209ENST00000623056 ARHGAP45Q92619 1136 aa17.39■□□□□ 0.38
LDB3-209ENST00000623056 DIAPH1O60610 1272 aaKnown RBP17.39■□□□□ 0.37
LDB3-209ENST00000623056 UQCRHLA0A096LP55 91 aa17.38■□□□□ 0.37
LDB3-209ENST00000623056 UQCRHP07919 91 aa17.38■□□□□ 0.37
LDB3-209ENST00000623056 ZKSCAN5Q9Y2L8 839 aa17.38■□□□□ 0.37
LDB3-209ENST00000623056 CAMSAP1Q5T5Y3 1602 aa17.38■□□□□ 0.37
LDB3-209ENST00000623056 PLEKHM2Q8IWE5 1019 aa17.38■□□□□ 0.37
LDB3-209ENST00000623056 GPT2Q8TD30 523 aa17.38■□□□□ 0.37
LDB3-209ENST00000623056 RBM27Q9P2N5 1060 aaKnown RBP17.38■□□□□ 0.37
LDB3-209ENST00000623056 VAMP4O75379 141 aa17.37■□□□□ 0.37
LDB3-209ENST00000623056 PRPF40AO75400 957 aaKnown RBP17.37■□□□□ 0.37
LDB3-209ENST00000623056 USP26Q9BXU7 913 aa17.37■□□□□ 0.37
LDB3-209ENST00000623056 CWC22Q9HCG8 908 aaKnown RBP17.37■□□□□ 0.37
LDB3-209ENST00000623056 ABCC4O15439 1325 aa17.37■□□□□ 0.37
LDB3-209ENST00000623056 RPGRIP1LQ68CZ1 1315 aa17.37■□□□□ 0.37
LDB3-209ENST00000623056 FYB1O15117 783 aa17.36■□□□□ 0.37
LDB3-209ENST00000623056 SAFB2Q14151 953 aaKnown RBP eCLIP17.36■□□□□ 0.37
LDB3-209ENST00000623056 SIGLEC1Q9BZZ2 1709 aa17.36■□□□□ 0.37
LDB3-209ENST00000623056 LRRC7Q96NW7 1537 aa17.36■□□□□ 0.37
LDB3-209ENST00000623056 CFAP44Q96MT7 982 aa17.36■□□□□ 0.37
LDB3-209ENST00000623056 CSPP1Q1MSJ5 1256 aa17.35■□□□□ 0.37
LDB3-209ENST00000623056 TTC22Q5TAA0 569 aa17.35■□□□□ 0.37
LDB3-209ENST00000623056 TSPYL6Q8N831 410 aa17.35■□□□□ 0.37
LDB3-209ENST00000623056 PRDM4Q9UKN5 801 aa17.35■□□□□ 0.37
LDB3-209ENST00000623056 ANKRD26Q9UPS8 1709 aa17.35■□□□□ 0.37
LDB3-209ENST00000623056 FCHSD2O94868 740 aa17.35■□□□□ 0.37
LDB3-209ENST00000623056 MCM5P33992 734 aa17.35■□□□□ 0.37
LDB3-209ENST00000623056 ZGPATQ8N5A5 531 aaKnown RBP17.35■□□□□ 0.37
LDB3-209ENST00000623056 ZDHHC9Q9Y397 364 aa17.35■□□□□ 0.37
LDB3-209ENST00000623056 PNPLA6Q8IY17 1366 aa17.35■□□□□ 0.37
LDB3-209ENST00000623056 LRSAM1Q6UWE0 723 aa17.34■□□□□ 0.37
LDB3-209ENST00000623056 PRKAR2BP31323 418 aa17.33■□□□□ 0.37
LDB3-209ENST00000623056 SRPK2P78362 688 aaKnown RBP17.33■□□□□ 0.37
LDB3-209ENST00000623056 NUTM2DQ5VT03 806 aaPredicted RBP17.33■□□□□ 0.37
LDB3-209ENST00000623056 TMEM63CQ9P1W3 806 aa17.33■□□□□ 0.37
LDB3-209ENST00000623056 FAM135BQ49AJ0 1406 aa17.33■□□□□ 0.36
LDB3-209ENST00000623056 DYNC1I1O14576 645 aa17.32■□□□□ 0.36
LDB3-209ENST00000623056 INTS3Q68E01 1043 aaKnown RBP17.32■□□□□ 0.36
LDB3-209ENST00000623056 THUMPD2Q9BTF0 503 aaKnown RBP17.32■□□□□ 0.36
LDB3-209ENST00000623056 CCDC39Q9UFE4 941 aa17.32■□□□□ 0.36
LDB3-209ENST00000623056 SYCE3A1L190 88 aa17.32■□□□□ 0.36
LDB3-209ENST00000623056 ST18O60284 1047 aa17.32■□□□□ 0.36
LDB3-209ENST00000623056 CDC42BPGQ6DT37 1551 aa17.31■□□□□ 0.36
LDB3-209ENST00000623056 ELL2O00472 640 aaPredicted RBP17.31■□□□□ 0.36
LDB3-209ENST00000623056 C16orf71Q8IYS4 520 aaPredicted RBP17.31■□□□□ 0.36
LDB3-209ENST00000623056 CHAMP1Q96JM3 812 aa17.31■□□□□ 0.36
LDB3-209ENST00000623056 DCTPP1Q9H773 170 aa17.31■□□□□ 0.36
LDB3-209ENST00000623056 KNDC1Q76NI1 1749 aa17.31■□□□□ 0.36
LDB3-209ENST00000623056 MTERF4Q7Z6M4 381 aaKnown RBP17.31■□□□□ 0.36
LDB3-209ENST00000623056 NSFL1CQ9UNZ2 370 aaKnown RBP17.31■□□□□ 0.36
LDB3-209ENST00000623056 SASS6Q6UVJ0 657 aa17.3■□□□□ 0.36
LDB3-209ENST00000623056 TERF2IPQ9NYB0 399 aa17.3■□□□□ 0.36
LDB3-209ENST00000623056 CD163L1Q9NR16 1453 aa17.3■□□□□ 0.36
LDB3-209ENST00000623056 AEBP2Q6ZN18 517 aaPredicted RBP17.3■□□□□ 0.36
LDB3-209ENST00000623056 ATAD2Q6PL18 1390 aa17.29■□□□□ 0.36
LDB3-209ENST00000623056 NFE2L2Q16236 605 aa17.29■□□□□ 0.36
LDB3-209ENST00000623056 ZFYVE9O95405 1425 aa17.29■□□□□ 0.36
LDB3-209ENST00000623056 GNAI1P63096 354 aa17.29■□□□□ 0.36
LDB3-209ENST00000623056 OTUD7AQ8TE49 926 aaPredicted RBP17.29■□□□□ 0.36
LDB3-209ENST00000623056 PHACTR3Q96KR7 559 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms