RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 TAF7Q15545 349 aaPredicted RBP11.3□□□□□ -0.6
HDAC9-229ENST00000622668 CDCA7Q9BWT1 371 aaPredicted RBP11.3□□□□□ -0.6
HDAC9-229ENST00000622668 COG6Q9Y2V7 657 aa11.3□□□□□ -0.6
HDAC9-229ENST00000622668 DNMT1P26358 1616 aaKnown RBP11.3□□□□□ -0.6
HDAC9-229ENST00000622668 PAXIP1Q6ZW49 1069 aaPredicted RBP11.3□□□□□ -0.6
HDAC9-229ENST00000622668 BRINP3Q76B58 766 aa11.3□□□□□ -0.6
HDAC9-229ENST00000622668 PTPRMP28827 1452 aa11.3□□□□□ -0.6
HDAC9-229ENST00000622668 SLC39A6Q13433 755 aa11.29□□□□□ -0.6
HDAC9-229ENST00000622668 TPRNQ4KMQ1 711 aa11.29□□□□□ -0.6
HDAC9-229ENST00000622668 ZBTB3Q9H5J0 574 aa11.29□□□□□ -0.6
HDAC9-229ENST00000622668 PLEKHH1Q9ULM0 1364 aa11.29□□□□□ -0.6
HDAC9-229ENST00000622668 ERVK-7P63135 1459 aa11.29□□□□□ -0.6
HDAC9-229ENST00000622668 CCDC27Q2M243 656 aa11.29□□□□□ -0.6
HDAC9-229ENST00000622668 MAP3K19Q56UN5 1328 aa11.29□□□□□ -0.6
HDAC9-229ENST00000622668 ABCC11Q96J66 1382 aa11.29□□□□□ -0.6
HDAC9-229ENST00000622668 C11orf95C9JLR9 678 aaPredicted RBP11.29□□□□□ -0.6
HDAC9-229ENST00000622668 CWC22Q9HCG8 908 aaKnown RBP11.29□□□□□ -0.6
HDAC9-229ENST00000622668 CCNL1Q9UK58 526 aaPredicted RBP11.29□□□□□ -0.6
HDAC9-229ENST00000622668 CFAP43Q8NDM7 1665 aa11.29□□□□□ -0.6
HDAC9-229ENST00000622668 NINLQ9Y2I6 1382 aa11.28□□□□□ -0.6
HDAC9-229ENST00000622668 IFIT2P09913 472 aaKnown RBP11.28□□□□□ -0.6
HDAC9-229ENST00000622668 ADGRL2O95490 1459 aa11.28□□□□□ -0.6
HDAC9-229ENST00000622668 RBM5P52756 815 aaKnown RBP eCLIP11.28□□□□□ -0.6
HDAC9-229ENST00000622668 MAST1Q9Y2H9 1570 aa11.28□□□□□ -0.6
HDAC9-229ENST00000622668 APPP05067 770 aa11.27□□□□□ -0.6
HDAC9-229ENST00000622668 TMPOP42166 694 aaKnown RBP11.27□□□□□ -0.6
HDAC9-229ENST00000622668 AMOTL1Q8IY63 956 aa11.27□□□□□ -0.6
HDAC9-229ENST00000622668 IP6K1Q92551 441 aa11.27□□□□□ -0.6
HDAC9-229ENST00000622668 RTCBQ9Y3I0 505 aaKnown RBP11.27□□□□□ -0.6
HDAC9-229ENST00000622668 ARAP3Q8WWN8 1544 aa11.27□□□□□ -0.61
HDAC9-229ENST00000622668 PRIM1P49642 420 aaKnown RBP11.27□□□□□ -0.61
HDAC9-229ENST00000622668 AEBP1Q8IUX7 1158 aa11.27□□□□□ -0.61
HDAC9-229ENST00000622668 RPGRQ92834 1020 aaKnown RBP11.27□□□□□ -0.61
HDAC9-229ENST00000622668 AFF2P51816 1311 aa11.27□□□□□ -0.61
HDAC9-229ENST00000622668 PRAG1Q86YV5 1406 aa11.27□□□□□ -0.61
HDAC9-229ENST00000622668 COL17A1Q9UMD9 1497 aaPredicted RBP11.27□□□□□ -0.61
HDAC9-229ENST00000622668 LARP1Q6PKG0 1096 aaKnown RBP11.26□□□□□ -0.61
HDAC9-229ENST00000622668 TEX13AQ9BXU3 409 aaPredicted RBP11.26□□□□□ -0.61
HDAC9-229ENST00000622668 TRMT112Q9UI30 125 aaKnown RBP11.26□□□□□ -0.61
HDAC9-229ENST00000622668 TRIM37O94972 964 aa11.26□□□□□ -0.61
HDAC9-229ENST00000622668 DZIP1LQ8IYY4 767 aaKnown RBP11.26□□□□□ -0.61
HDAC9-229ENST00000622668 KIF16BQ96L93 1317 aa11.26□□□□□ -0.61
HDAC9-229ENST00000622668 GNPATO15228 680 aa11.26□□□□□ -0.61
HDAC9-229ENST00000622668 CCDC57Q2TAC2 916 aa11.26□□□□□ -0.61
HDAC9-229ENST00000622668 NFATC2IPQ8NCF5 419 aa11.26□□□□□ -0.61
HDAC9-229ENST00000622668 CTDP1Q9Y5B0 961 aaPredicted RBP11.26□□□□□ -0.61
HDAC9-229ENST00000622668 HOXC9P31274 260 aa11.26□□□□□ -0.61
HDAC9-229ENST00000622668 ANKRD36BQ8N2N9 1353 aa11.26□□□□□ -0.61
HDAC9-229ENST00000622668 EIF4A2Q14240 407 aaKnown RBP11.25□□□□□ -0.61
HDAC9-229ENST00000622668 NBPF6Q5VWK0 638 aa11.25□□□□□ -0.61
HDAC9-229ENST00000622668 KRT27Q7Z3Y8 459 aa11.25□□□□□ -0.61
HDAC9-229ENST00000622668 NBPF5PQ86XG9 351 aaPredicted RBP11.25□□□□□ -0.61
HDAC9-229ENST00000622668 RILPL2Q969X0 211 aa11.25□□□□□ -0.61
HDAC9-229ENST00000622668 NBPF4Q96M43 638 aa11.25□□□□□ -0.61
HDAC9-229ENST00000622668 BRD4O60885 1362 aaPredicted RBP11.25□□□□□ -0.61
HDAC9-229ENST00000622668 PZPP20742 1482 aa11.25□□□□□ -0.61
HDAC9-229ENST00000622668 FLT4P35916 1363 aa11.25□□□□□ -0.61
HDAC9-229ENST00000622668 EIF5BO60841 1220 aaKnown RBP11.25□□□□□ -0.61
HDAC9-229ENST00000622668 DUSP27Q5VZP5 1158 aa11.25□□□□□ -0.61
HDAC9-229ENST00000622668 MCCP23508 829 aa11.24□□□□□ -0.61
HDAC9-229ENST00000622668 SRCIN1Q9C0H9 1055 aa11.24□□□□□ -0.61
HDAC9-229ENST00000622668 POLKQ9UBT6 870 aa11.24□□□□□ -0.61
HDAC9-229ENST00000622668 A2ML1A8K2U0 1454 aa11.24□□□□□ -0.61
HDAC9-229ENST00000622668 ARHGEF5Q12774 1597 aa11.24□□□□□ -0.61
HDAC9-229ENST00000622668 ANKRD45Q5TZF3 282 aa11.24□□□□□ -0.61
HDAC9-229ENST00000622668 SEPT12Q8IYM1 358 aa11.24□□□□□ -0.61
HDAC9-229ENST00000622668 EYA1Q99502 592 aa11.24□□□□□ -0.61
HDAC9-229ENST00000622668 ROBO2Q9HCK4 1378 aa11.24□□□□□ -0.61
HDAC9-229ENST00000622668 FAM83GA6ND36 823 aa11.24□□□□□ -0.61
HDAC9-229ENST00000622668 C6orf229H3BNL8 230 aa11.24□□□□□ -0.61
HDAC9-229ENST00000622668 SIL1Q9H173 461 aa11.23□□□□□ -0.61
HDAC9-229ENST00000622668 PLEKHG3A1L390 1219 aa11.23□□□□□ -0.61
HDAC9-229ENST00000622668 IGHMBP2P38935 993 aaKnown RBP11.23□□□□□ -0.61
HDAC9-229ENST00000622668 SIRT1Q96EB6 747 aa11.23□□□□□ -0.61
HDAC9-229ENST00000622668 PREX2Q70Z35 1606 aa11.23□□□□□ -0.61
HDAC9-229ENST00000622668 SURF6O75683 361 aaKnown RBP11.23□□□□□ -0.61
HDAC9-229ENST00000622668 ANXA1P04083 346 aa11.23□□□□□ -0.61
HDAC9-229ENST00000622668 SETDB2Q96T68 719 aa11.23□□□□□ -0.61
HDAC9-229ENST00000622668 ANKIB1Q9P2G1 1089 aa11.23□□□□□ -0.61
HDAC9-229ENST00000622668 TBC1D2BQ9UPU7 963 aa11.23□□□□□ -0.61
HDAC9-229ENST00000622668 PARP3Q9Y6F1 533 aa11.23□□□□□ -0.61
HDAC9-229ENST00000622668 KIAA0232Q92628 1395 aa11.23□□□□□ -0.61
HDAC9-229ENST00000622668 SNRPA1P09661 255 aaKnown RBP11.23□□□□□ -0.61
HDAC9-229ENST00000622668 PIP4K2AP48426 406 aaPredicted RBP11.23□□□□□ -0.61
HDAC9-229ENST00000622668 DIP2BQ9P265 1576 aa11.22□□□□□ -0.61
HDAC9-229ENST00000622668 GNAI3P08754 354 aa11.22□□□□□ -0.61
HDAC9-229ENST00000622668 LRRFIP1Q32MZ4 808 aaKnown RBP11.22□□□□□ -0.61
HDAC9-229ENST00000622668 A0A1W2PP64 1363 aa11.22□□□□□ -0.61
HDAC9-229ENST00000622668 CDCA7LQ96GN5 454 aa11.22□□□□□ -0.61
HDAC9-229ENST00000622668 DDX19BQ9UMR2 479 aa11.22□□□□□ -0.61
HDAC9-229ENST00000622668 PCDH11XQ9BZA7 1347 aa11.22□□□□□ -0.61
HDAC9-229ENST00000622668 PCDH11YQ9BZA8 1340 aa11.22□□□□□ -0.61
HDAC9-229ENST00000622668 GPR162Q16538 588 aa11.22□□□□□ -0.61
HDAC9-229ENST00000622668 HSP90AB3PQ58FF7 597 aa11.21□□□□□ -0.61
HDAC9-229ENST00000622668 TRAPPC3LQ5T215 181 aa11.21□□□□□ -0.61
HDAC9-229ENST00000622668 UNC5CLQ8IV45 518 aa11.21□□□□□ -0.61
HDAC9-229ENST00000622668 MYD88Q99836 296 aa11.21□□□□□ -0.61
HDAC9-229ENST00000622668 PPP4R2Q9NY27 417 aa11.21□□□□□ -0.61
HDAC9-229ENST00000622668 A0A087WZG4 1122 aa11.21□□□□□ -0.61
HDAC9-229ENST00000622668 FAM196AQ6ZSG2 479 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms