RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 ZFYVE16Q7Z3T8 1539 aa9.67□□□□□ -0.86
VPS11-209ENST00000622309 KCTD17Q8N5Z5 321 aa9.67□□□□□ -0.86
VPS11-209ENST00000622309 GPATCH11Q8N954 259 aa9.67□□□□□ -0.86
VPS11-209ENST00000622309 TTC37Q6PGP7 1564 aa9.67□□□□□ -0.86
VPS11-209ENST00000622309 RICTORQ6R327 1708 aa9.67□□□□□ -0.86
VPS11-209ENST00000622309 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.66□□□□□ -0.86
VPS11-209ENST00000622309 ERICH4A6NGS2 130 aa9.66□□□□□ -0.86
VPS11-209ENST00000622309 SLFN14P0C7P3 912 aa9.66□□□□□ -0.86
VPS11-209ENST00000622309 PIBF1Q8WXW3 757 aa9.66□□□□□ -0.86
VPS11-209ENST00000622309 CCDC144AA2RUR9 1427 aa9.66□□□□□ -0.86
VPS11-209ENST00000622309 RWDD1Q9H446 243 aaPredicted RBP9.66□□□□□ -0.86
VPS11-209ENST00000622309 ADAMTS8Q9UP79 889 aa9.66□□□□□ -0.86
VPS11-209ENST00000622309 RNF214Q8ND24 703 aa9.66□□□□□ -0.86
VPS11-209ENST00000622309 PANK1Q8TE04 598 aa9.66□□□□□ -0.86
VPS11-209ENST00000622309 TRERF1Q96PN7 1200 aa9.66□□□□□ -0.86
VPS11-209ENST00000622309 CAPN2P17655 700 aa9.65□□□□□ -0.86
VPS11-209ENST00000622309 MMP14P50281 582 aa9.65□□□□□ -0.86
VPS11-209ENST00000622309 SLFN5Q08AF3 891 aa9.65□□□□□ -0.86
VPS11-209ENST00000622309 YY1AP1Q9H869 796 aa9.65□□□□□ -0.86
VPS11-209ENST00000622309 PREX1Q8TCU6 1659 aa9.65□□□□□ -0.86
VPS11-209ENST00000622309 KIAA1107Q9UPP5 1409 aa9.65□□□□□ -0.87
VPS11-209ENST00000622309 ARHGAP5Q13017 1502 aa9.65□□□□□ -0.87
VPS11-209ENST00000622309 TULP2O00295 520 aa9.64□□□□□ -0.87
VPS11-209ENST00000622309 PRR29P0C7W0 189 aa9.64□□□□□ -0.87
VPS11-209ENST00000622309 AXDND1Q5T1B0 1012 aaPredicted RBP9.64□□□□□ -0.87
VPS11-209ENST00000622309 FER1L4A9Z1Z3 1794 aa9.64□□□□□ -0.87
VPS11-209ENST00000622309 ANKRD7Q92527 254 aa9.64□□□□□ -0.87
VPS11-209ENST00000622309 GEMIN8Q9NWZ8 242 aaKnown RBP9.64□□□□□ -0.87
VPS11-209ENST00000622309 ST20-MTHFSA0A0A6YYL1 179 aa9.64□□□□□ -0.87
VPS11-209ENST00000622309 TERF2Q15554 542 aa9.64□□□□□ -0.87
VPS11-209ENST00000622309 LRSAM1Q6UWE0 723 aa9.64□□□□□ -0.87
VPS11-209ENST00000622309 EFCC1Q9HA90 598 aa9.64□□□□□ -0.87
VPS11-209ENST00000622309 PLEKHH1Q9ULM0 1364 aa9.64□□□□□ -0.87
VPS11-209ENST00000622309 IQSEC2Q5JU85 1478 aa9.63□□□□□ -0.87
VPS11-209ENST00000622309 RTEL1-TNFRSF6BF6WH68 1400 aa9.63□□□□□ -0.87
VPS11-209ENST00000622309 SYCE3A1L190 88 aa9.63□□□□□ -0.87
VPS11-209ENST00000622309 K7ELQ4 463 aaPredicted RBP9.63□□□□□ -0.87
VPS11-209ENST00000622309 RIOK3O14730 519 aaKnown RBP9.63□□□□□ -0.87
VPS11-209ENST00000622309 CLEC17AQ6ZS10 378 aa9.63□□□□□ -0.87
VPS11-209ENST00000622309 PTPRTO14522 1441 aa9.62□□□□□ -0.87
VPS11-209ENST00000622309 FKBP5Q13451 457 aaPredicted RBP9.62□□□□□ -0.87
VPS11-209ENST00000622309 RBM27Q9P2N5 1060 aaKnown RBP9.62□□□□□ -0.87
VPS11-209ENST00000622309 CC2D2BQ6DHV5 1058 aa9.62□□□□□ -0.87
VPS11-209ENST00000622309 ZNF622Q969S3 477 aaKnown RBP eCLIP9.62□□□□□ -0.87
VPS11-209ENST00000622309 SYCP2Q9BX26 1530 aa9.62□□□□□ -0.87
VPS11-209ENST00000622309 ARHGEF12Q9NZN5 1544 aa9.62□□□□□ -0.87
VPS11-209ENST00000622309 ADGBQ8N7X0 1667 aa9.62□□□□□ -0.87
VPS11-209ENST00000622309 ADGRL2O95490 1459 aa9.61□□□□□ -0.87
VPS11-209ENST00000622309 UHRF1BP1Q6BDS2 1440 aa9.61□□□□□ -0.87
VPS11-209ENST00000622309 PRPF40AO75400 957 aaKnown RBP9.61□□□□□ -0.87
VPS11-209ENST00000622309 C17orf53Q8N3J3 647 aaPredicted RBP9.61□□□□□ -0.87
VPS11-209ENST00000622309 AFAP1Q8N556 730 aa9.61□□□□□ -0.87
VPS11-209ENST00000622309 PCDHB15Q9Y5E8 787 aa9.61□□□□□ -0.87
VPS11-209ENST00000622309 MBD5Q9P267 1494 aa9.61□□□□□ -0.87
VPS11-209ENST00000622309 MCCP23508 829 aa9.61□□□□□ -0.87
VPS11-209ENST00000622309 PSEN1P49768 467 aa9.61□□□□□ -0.87
VPS11-209ENST00000622309 NUCB2P80303 420 aa9.61□□□□□ -0.87
VPS11-209ENST00000622309 MLECQ14165 292 aa9.61□□□□□ -0.87
VPS11-209ENST00000622309 KRT222Q8N1A0 295 aa9.61□□□□□ -0.87
VPS11-209ENST00000622309 LMBRD1Q9NUN5 540 aa9.61□□□□□ -0.87
VPS11-209ENST00000622309 ZBTB12Q9Y330 459 aaPredicted RBP9.61□□□□□ -0.87
VPS11-209ENST00000622309 SAMD9LQ8IVG5 1584 aa9.61□□□□□ -0.87
VPS11-209ENST00000622309 ATP10AO60312 1499 aa9.6□□□□□ -0.87
VPS11-209ENST00000622309 NKTRP30414 1462 aaKnown RBP9.6□□□□□ -0.87
VPS11-209ENST00000622309 FEZ2Q9UHY8 353 aaPredicted RBP9.6□□□□□ -0.87
VPS11-209ENST00000622309 DDX41Q9UJV9 622 aaKnown RBP9.6□□□□□ -0.87
VPS11-209ENST00000622309 CCDC141Q6ZP82 1450 aa9.6□□□□□ -0.87
VPS11-209ENST00000622309 LOC102724159A0A0B4J2E5 919 aa9.6□□□□□ -0.87
VPS11-209ENST00000622309 GTF2A1P52655 376 aaPredicted RBP9.6□□□□□ -0.87
VPS11-209ENST00000622309 PWP2Q15269 919 aaKnown RBP9.6□□□□□ -0.87
VPS11-209ENST00000622309 TTC12Q9H892 705 aaPredicted RBP9.6□□□□□ -0.87
VPS11-209ENST00000622309 CTNNA3Q9UI47 895 aa9.6□□□□□ -0.87
VPS11-209ENST00000622309 CROCC2H7BZ55 1655 aa9.6□□□□□ -0.87
VPS11-209ENST00000622309 TSPY26PQ9H489 355 aa9.59□□□□□ -0.87
VPS11-209ENST00000622309 CDC42BPBQ9Y5S2 1711 aa9.59□□□□□ -0.87
VPS11-209ENST00000622309 ZNF521Q96K83 1311 aa9.59□□□□□ -0.87
VPS11-209ENST00000622309 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.59□□□□□ -0.87
VPS11-209ENST00000622309 MORC2Q9Y6X9 1032 aaPredicted RBP9.59□□□□□ -0.87
VPS11-209ENST00000622309 KDM5CP41229 1560 aa9.58□□□□□ -0.88
VPS11-209ENST00000622309 GAS2L2Q8NHY3 880 aa9.58□□□□□ -0.88
VPS11-209ENST00000622309 SPTLC3Q9NUV7 552 aa9.58□□□□□ -0.88
VPS11-209ENST00000622309 RSPH14Q9UHP6 348 aa9.58□□□□□ -0.88
VPS11-209ENST00000622309 CTIFO43310 598 aaKnown RBP9.58□□□□□ -0.88
VPS11-209ENST00000622309 SEMA3FQ13275 785 aa9.58□□□□□ -0.88
VPS11-209ENST00000622309 EFCAB2Q5VUJ9 269 aa9.58□□□□□ -0.88
VPS11-209ENST00000622309 SGSM3Q96HU1 749 aa9.58□□□□□ -0.88
VPS11-209ENST00000622309 KIF16BQ96L93 1317 aa9.58□□□□□ -0.88
VPS11-209ENST00000622309 STRCQ7RTU9 1775 aa9.57□□□□□ -0.88
VPS11-209ENST00000622309 LMOD3Q0VAK6 560 aa9.57□□□□□ -0.88
VPS11-209ENST00000622309 PER1O15534 1290 aaPredicted RBP9.57□□□□□ -0.88
VPS11-209ENST00000622309 TRMT2AQ8IZ69 625 aaKnown RBP9.57□□□□□ -0.88
VPS11-209ENST00000622309 TMEM63CQ9P1W3 806 aa9.57□□□□□ -0.88
VPS11-209ENST00000622309 NCBP1Q09161 790 aaKnown RBP9.57□□□□□ -0.88
VPS11-209ENST00000622309 CREBRFQ8IUR6 639 aa9.57□□□□□ -0.88
VPS11-209ENST00000622309 GPT2Q8TD30 523 aa9.57□□□□□ -0.88
VPS11-209ENST00000622309 RASSF4Q9H2L5 321 aa9.57□□□□□ -0.88
VPS11-209ENST00000622309 SIGLEC1Q9BZZ2 1709 aa9.56□□□□□ -0.88
VPS11-209ENST00000622309 IRF6O14896 467 aa9.56□□□□□ -0.88
VPS11-209ENST00000622309 MYCBPQ99417 103 aaPredicted RBP9.56□□□□□ -0.88
VPS11-209ENST00000622309 STK26Q9P289 416 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms