RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 OFD1O75665 1012 aa13.61□□□□□ -0.23
CLIP1-219ENST00000620786 LRRCC1Q9C099 1032 aa13.61□□□□□ -0.23
CLIP1-219ENST00000620786 RAI14Q9P0K7 980 aa13.61□□□□□ -0.23
CLIP1-219ENST00000620786 IQGAP2Q13576 1575 aa13.61□□□□□ -0.23
CLIP1-219ENST00000620786 TXLNAP40222 546 aa13.6□□□□□ -0.23
CLIP1-219ENST00000620786 WAPLQ7Z5K2 1190 aa13.6□□□□□ -0.23
CLIP1-219ENST00000620786 CDCA7LQ96GN5 454 aa13.6□□□□□ -0.23
CLIP1-219ENST00000620786 ADGRL1O94910 1474 aa13.6□□□□□ -0.23
CLIP1-219ENST00000620786 ZNF652Q9Y2D9 606 aa13.6□□□□□ -0.23
CLIP1-219ENST00000620786 GCC1Q96CN9 775 aa13.6□□□□□ -0.23
CLIP1-219ENST00000620786 CCDC85AQ96PX6 553 aaPredicted RBP13.6□□□□□ -0.23
CLIP1-219ENST00000620786 NGLY1Q96IV0 654 aa13.59□□□□□ -0.23
CLIP1-219ENST00000620786 CCDC141Q6ZP82 1450 aa13.59□□□□□ -0.23
CLIP1-219ENST00000620786 AACSQ86V21 672 aa13.59□□□□□ -0.23
CLIP1-219ENST00000620786 NAT10Q9H0A0 1025 aaKnown RBP13.59□□□□□ -0.23
CLIP1-219ENST00000620786 KIF14Q15058 1648 aa13.59□□□□□ -0.23
CLIP1-219ENST00000620786 MAGI1Q96QZ7 1491 aaPredicted RBP13.59□□□□□ -0.23
CLIP1-219ENST00000620786 SDF4Q9BRK5 362 aa13.58□□□□□ -0.23
CLIP1-219ENST00000620786 NUP133Q8WUM0 1156 aa13.58□□□□□ -0.24
CLIP1-219ENST00000620786 CCDC61Q9Y6R9 512 aa13.58□□□□□ -0.24
CLIP1-219ENST00000620786 SOGA3Q5TF21 947 aa13.58□□□□□ -0.24
CLIP1-219ENST00000620786 TMOD2Q9NZR1 351 aa13.58□□□□□ -0.24
CLIP1-219ENST00000620786 GPS2Q13227 327 aa13.58□□□□□ -0.24
CLIP1-219ENST00000620786 PDILTQ8N807 584 aa13.58□□□□□ -0.24
CLIP1-219ENST00000620786 NSD3Q9BZ95 1437 aa13.58□□□□□ -0.24
CLIP1-219ENST00000620786 MPHOSPH10O00566 681 aaKnown RBP13.57□□□□□ -0.24
CLIP1-219ENST00000620786 PTCD1O75127 700 aaKnown RBP13.57□□□□□ -0.24
CLIP1-219ENST00000620786 CEBPAP49715 358 aaPredicted RBP13.57□□□□□ -0.24
CLIP1-219ENST00000620786 HSP90AB2PQ58FF8 381 aa13.57□□□□□ -0.24
CLIP1-219ENST00000620786 LAMC3Q9Y6N6 1575 aa13.57□□□□□ -0.24
CLIP1-219ENST00000620786 TDO2P48775 406 aa13.57□□□□□ -0.24
CLIP1-219ENST00000620786 CEP126Q9P2H0 1117 aa13.57□□□□□ -0.24
CLIP1-219ENST00000620786 TIAM1Q13009 1591 aa13.57□□□□□ -0.24
CLIP1-219ENST00000620786 LRP2BPQ9P2M1 347 aa13.57□□□□□ -0.24
CLIP1-219ENST00000620786 DMRT2Q9Y5R5 561 aa13.57□□□□□ -0.24
CLIP1-219ENST00000620786 PDZRN3Q9UPQ7 1066 aa13.56□□□□□ -0.24
CLIP1-219ENST00000620786 TRIM22Q8IYM9 498 aa13.56□□□□□ -0.24
CLIP1-219ENST00000620786 USHBP1Q8N6Y0 703 aa13.56□□□□□ -0.24
CLIP1-219ENST00000620786 PAF1Q8N7H5 531 aa13.56□□□□□ -0.24
CLIP1-219ENST00000620786 TNNT3P45378 269 aaPredicted RBP13.56□□□□□ -0.24
CLIP1-219ENST00000620786 NEK4P51957 841 aa13.56□□□□□ -0.24
CLIP1-219ENST00000620786 STK3Q13188 491 aa13.56□□□□□ -0.24
CLIP1-219ENST00000620786 WDR63Q8IWG1 891 aa13.56□□□□□ -0.24
CLIP1-219ENST00000620786 ZNF396Q96N95 335 aaPredicted RBP13.56□□□□□ -0.24
CLIP1-219ENST00000620786 MAGEC2Q9UBF1 373 aaPredicted RBP13.56□□□□□ -0.24
CLIP1-219ENST00000620786 AMOTL2Q9Y2J4 779 aa13.56□□□□□ -0.24
CLIP1-219ENST00000620786 SRGAP3O43295 1099 aa13.55□□□□□ -0.24
CLIP1-219ENST00000620786 NBPF8Q3BBV2 869 aa13.55□□□□□ -0.24
CLIP1-219ENST00000620786 PHF8Q9UPP1 1060 aa13.55□□□□□ -0.24
CLIP1-219ENST00000620786 PPP6R1Q9UPN7 881 aa13.55□□□□□ -0.24
CLIP1-219ENST00000620786 MPRIPQ6WCQ1 1025 aa13.55□□□□□ -0.24
CLIP1-219ENST00000620786 LRPPRCP42704 1394 aaKnown RBP13.55□□□□□ -0.24
CLIP1-219ENST00000620786 FCHSD2O94868 740 aa13.55□□□□□ -0.24
CLIP1-219ENST00000620786 BCAR3O75815 825 aa13.54□□□□□ -0.24
CLIP1-219ENST00000620786 MIS18AQ9NYP9 233 aa13.54□□□□□ -0.24
CLIP1-219ENST00000620786 CYP46A1Q9Y6A2 500 aa13.54□□□□□ -0.24
CLIP1-219ENST00000620786 AKNAQ7Z591 1439 aa13.54□□□□□ -0.24
CLIP1-219ENST00000620786 CEBPZQ03701 1054 aaKnown RBP13.54□□□□□ -0.24
CLIP1-219ENST00000620786 SYCP1Q15431 976 aa13.54□□□□□ -0.24
CLIP1-219ENST00000620786 ZHX3Q9H4I2 956 aa13.54□□□□□ -0.24
CLIP1-219ENST00000620786 CAMSAP2Q08AD1 1489 aa13.54□□□□□ -0.24
CLIP1-219ENST00000620786 STK38Q15208 465 aa13.54□□□□□ -0.24
CLIP1-219ENST00000620786 NFE2L2Q16236 605 aa13.54□□□□□ -0.24
CLIP1-219ENST00000620786 METTL24Q5JXM2 366 aa13.54□□□□□ -0.24
CLIP1-219ENST00000620786 ANKIB1Q9P2G1 1089 aa13.54□□□□□ -0.24
CLIP1-219ENST00000620786 FAM135AQ9P2D6 1515 aa13.53□□□□□ -0.24
CLIP1-219ENST00000620786 FBXO31Q5XUX0 539 aaPredicted RBP13.53□□□□□ -0.24
CLIP1-219ENST00000620786 FOXO3O43524 673 aa13.53□□□□□ -0.24
CLIP1-219ENST00000620786 UBAC1Q9BSL1 405 aa13.53□□□□□ -0.24
CLIP1-219ENST00000620786 PRXQ9BXM0 1461 aa13.53□□□□□ -0.24
CLIP1-219ENST00000620786 KINO60870 393 aaKnown RBP13.52□□□□□ -0.24
CLIP1-219ENST00000620786 IDH1O75874 414 aaKnown RBP13.52□□□□□ -0.24
CLIP1-219ENST00000620786 GSE1Q14687 1217 aa13.52□□□□□ -0.24
CLIP1-219ENST00000620786 CT47B1P0C2W7 299 aaPredicted RBP13.52□□□□□ -0.24
CLIP1-219ENST00000620786 PDCP20941 246 aa13.52□□□□□ -0.24
CLIP1-219ENST00000620786 MCM10Q7L590 875 aa13.52□□□□□ -0.25
CLIP1-219ENST00000620786 ABCF2Q9UG63 623 aa13.52□□□□□ -0.25
CLIP1-219ENST00000620786 ZNF76P36508 570 aa13.52□□□□□ -0.25
CLIP1-219ENST00000620786 ANKRD1Q15327 319 aa13.52□□□□□ -0.25
CLIP1-219ENST00000620786 CAVIN4Q5BKX8 364 aa13.52□□□□□ -0.25
CLIP1-219ENST00000620786 RPGRQ92834 1020 aaKnown RBP13.52□□□□□ -0.25
CLIP1-219ENST00000620786 ZNF219Q9P2Y4 722 aaPredicted RBP13.52□□□□□ -0.25
CLIP1-219ENST00000620786 AMOTQ4VCS5 1084 aa13.51□□□□□ -0.25
CLIP1-219ENST00000620786 PAXIP1Q6ZW49 1069 aaPredicted RBP13.51□□□□□ -0.25
CLIP1-219ENST00000620786 MYD88Q99836 296 aa13.51□□□□□ -0.25
CLIP1-219ENST00000620786 PLB1Q6P1J6 1458 aa13.51□□□□□ -0.25
CLIP1-219ENST00000620786 PATL2C9JE40 543 aaKnown RBP13.51□□□□□ -0.25
CLIP1-219ENST00000620786 EXOC5O00471 708 aa13.51□□□□□ -0.25
CLIP1-219ENST00000620786 MCM2P49736 904 aa13.51□□□□□ -0.25
CLIP1-219ENST00000620786 PDE3AQ14432 1141 aa13.51□□□□□ -0.25
CLIP1-219ENST00000620786 ATF7IPQ6VMQ6 1270 aa13.51□□□□□ -0.25
CLIP1-219ENST00000620786 CUL7Q14999 1698 aa13.51□□□□□ -0.25
CLIP1-219ENST00000620786 CCDC173Q0VFZ6 552 aa13.51□□□□□ -0.25
CLIP1-219ENST00000620786 KRT28Q7Z3Y7 464 aa13.51□□□□□ -0.25
CLIP1-219ENST00000620786 IFT57Q9NWB7 429 aa13.51□□□□□ -0.25
CLIP1-219ENST00000620786 AIDAQ96BJ3 306 aa13.51□□□□□ -0.25
CLIP1-219ENST00000620786 RUFY1Q96T51 708 aa13.51□□□□□ -0.25
CLIP1-219ENST00000620786 GRIN2AQ12879 1464 aa13.5□□□□□ -0.25
CLIP1-219ENST00000620786 FILIP1LQ4L180 1135 aa13.5□□□□□ -0.25
CLIP1-219ENST00000620786 TTLL5Q6EMB2 1281 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms