RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 TNRQ92752 1358 aa10.92□□□□□ -0.66
PDLIM5-222ENST00000615540 DDX58O95786 925 aaKnown RBP10.92□□□□□ -0.66
PDLIM5-222ENST00000615540 ATP10AO60312 1499 aa10.92□□□□□ -0.66
PDLIM5-222ENST00000615540 DMRT2Q9Y5R5 561 aa10.92□□□□□ -0.66
PDLIM5-222ENST00000615540 GNAT3A8MTJ3 354 aa10.92□□□□□ -0.66
PDLIM5-222ENST00000615540 CT47B1P0C2W7 299 aaPredicted RBP10.92□□□□□ -0.66
PDLIM5-222ENST00000615540 NSD2O96028 1365 aa10.92□□□□□ -0.66
PDLIM5-222ENST00000615540 TOMM22Q9NS69 142 aa10.91□□□□□ -0.66
PDLIM5-222ENST00000615540 ISY1Q9ULR0 285 aaKnown RBP10.91□□□□□ -0.66
PDLIM5-222ENST00000615540 ZMYM4Q5VZL5 1548 aa10.91□□□□□ -0.66
PDLIM5-222ENST00000615540 HDAC5Q9UQL6 1122 aa10.91□□□□□ -0.66
PDLIM5-222ENST00000615540 AEBP1Q8IUX7 1158 aa10.9□□□□□ -0.66
PDLIM5-222ENST00000615540 NEUROD6Q96NK8 337 aa10.9□□□□□ -0.66
PDLIM5-222ENST00000615540 BCORL1Q5H9F3 1711 aa10.9□□□□□ -0.66
PDLIM5-222ENST00000615540 KDM4AO75164 1064 aa10.9□□□□□ -0.66
PDLIM5-222ENST00000615540 NUTM1Q86Y26 1132 aa10.9□□□□□ -0.66
PDLIM5-222ENST00000615540 DNAJC2Q99543 621 aaKnown RBP10.9□□□□□ -0.66
PDLIM5-222ENST00000615540 FAM177BA6PVY3 158 aa10.9□□□□□ -0.67
PDLIM5-222ENST00000615540 IL1RAPL2Q9NP60 686 aa10.9□□□□□ -0.67
PDLIM5-222ENST00000615540 KDM5DQ9BY66 1539 aa10.89□□□□□ -0.67
PDLIM5-222ENST00000615540 MAGI2Q86UL8 1455 aa10.89□□□□□ -0.67
PDLIM5-222ENST00000615540 DDX54Q8TDD1 881 aaKnown RBP10.89□□□□□ -0.67
PDLIM5-222ENST00000615540 SYAP1Q96A49 352 aaPredicted RBP10.89□□□□□ -0.67
PDLIM5-222ENST00000615540 H3BQV1 296 aa10.89□□□□□ -0.67
PDLIM5-222ENST00000615540 CCT4P50991 539 aaKnown RBP10.89□□□□□ -0.67
PDLIM5-222ENST00000615540 IFFO2Q5TF58 517 aa10.89□□□□□ -0.67
PDLIM5-222ENST00000615540 LRRCC1Q9C099 1032 aa10.89□□□□□ -0.67
PDLIM5-222ENST00000615540 EXOC6BQ9Y2D4 811 aa10.89□□□□□ -0.67
PDLIM5-222ENST00000615540 MPRIPQ6WCQ1 1025 aa10.88□□□□□ -0.67
PDLIM5-222ENST00000615540 YTHDC2Q9H6S0 1430 aaKnown RBP10.88□□□□□ -0.67
PDLIM5-222ENST00000615540 RLBP1P12271 317 aa10.88□□□□□ -0.67
PDLIM5-222ENST00000615540 PIK3C2GO75747 1445 aa10.88□□□□□ -0.67
PDLIM5-222ENST00000615540 GNAI3P08754 354 aa10.88□□□□□ -0.67
PDLIM5-222ENST00000615540 TSPOAP1O95153 1857 aa10.88□□□□□ -0.67
PDLIM5-222ENST00000615540 CCDC27Q2M243 656 aa10.88□□□□□ -0.67
PDLIM5-222ENST00000615540 HSP90AB2PQ58FF8 381 aa10.88□□□□□ -0.67
PDLIM5-222ENST00000615540 RBM42Q9BTD8 480 aaKnown RBP10.88□□□□□ -0.67
PDLIM5-222ENST00000615540 CDC42BPBQ9Y5S2 1711 aa10.88□□□□□ -0.67
PDLIM5-222ENST00000615540 BRPF3Q9ULD4 1205 aa10.88□□□□□ -0.67
PDLIM5-222ENST00000615540 PCDHB15Q9Y5E8 787 aa10.87□□□□□ -0.67
PDLIM5-222ENST00000615540 ALDH1L2Q3SY69 923 aa10.87□□□□□ -0.67
PDLIM5-222ENST00000615540 CNTROBQ8N137 903 aa10.87□□□□□ -0.67
PDLIM5-222ENST00000615540 YEATS2Q9ULM3 1422 aa10.87□□□□□ -0.67
PDLIM5-222ENST00000615540 TATP17735 454 aaPredicted RBP10.87□□□□□ -0.67
PDLIM5-222ENST00000615540 TSHZ3Q63HK5 1081 aa10.87□□□□□ -0.67
PDLIM5-222ENST00000615540 POLR3AO14802 1390 aaPredicted RBP10.87□□□□□ -0.67
PDLIM5-222ENST00000615540 UHRF1BP1LA0JNW5 1464 aa10.87□□□□□ -0.67
PDLIM5-222ENST00000615540 SHROOM2Q13796 1616 aa10.87□□□□□ -0.67
PDLIM5-222ENST00000615540 CABP4P57796 275 aa10.87□□□□□ -0.67
PDLIM5-222ENST00000615540 RUFY2Q8WXA3 655 aa10.87□□□□□ -0.67
PDLIM5-222ENST00000615540 GOLGA6L6A8MZA4 724 aa10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 BLMP54132 1417 aaPredicted RBP10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 FSD1Q9BTV5 496 aa10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 NPATQ14207 1427 aa10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 POLKQ9UBT6 870 aa10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 TRPM2O94759 1503 aa10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 ERC2O15083 957 aa10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 GTF2E1P29083 439 aaPredicted RBP10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 TOM1L2Q6ZVM7 507 aa10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 ABCC11Q96J66 1382 aa10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 VPS37CA5D8V6 355 aaPredicted RBP10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 GLIPR1L2Q4G1C9 344 aa10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 FBXW7Q969H0 707 aa10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 PHACTR3Q96KR7 559 aa10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 SRCIN1Q9C0H9 1055 aa10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 FOXO3O43524 673 aa10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 KRT24Q2M2I5 525 aa10.86□□□□□ -0.67
PDLIM5-222ENST00000615540 NEK4P51957 841 aa10.85□□□□□ -0.67
PDLIM5-222ENST00000615540 TSPYL6Q8N831 410 aa10.85□□□□□ -0.67
PDLIM5-222ENST00000615540 FAM184AQ8NB25 1140 aa10.85□□□□□ -0.67
PDLIM5-222ENST00000615540 ZFYVE16Q7Z3T8 1539 aa10.85□□□□□ -0.67
PDLIM5-222ENST00000615540 CFAP74Q9C0B2 1584 aa10.85□□□□□ -0.67
PDLIM5-222ENST00000615540 C8orf58Q8NAV2 365 aa10.85□□□□□ -0.67
PDLIM5-222ENST00000615540 SRGAP3O43295 1099 aa10.85□□□□□ -0.67
PDLIM5-222ENST00000615540 APPP05067 770 aa10.85□□□□□ -0.67
PDLIM5-222ENST00000615540 PHF8Q9UPP1 1060 aa10.85□□□□□ -0.67
PDLIM5-222ENST00000615540 TTC21BQ7Z4L5 1316 aa10.84□□□□□ -0.67
PDLIM5-222ENST00000615540 ZKSCAN1P17029 563 aaPredicted RBP10.84□□□□□ -0.67
PDLIM5-222ENST00000615540 EIF4A2Q14240 407 aaKnown RBP10.84□□□□□ -0.67
PDLIM5-222ENST00000615540 SKOR2Q2VWA4 1001 aaPredicted RBP10.84□□□□□ -0.67
PDLIM5-222ENST00000615540 CLTCL1P53675 1640 aa10.84□□□□□ -0.67
PDLIM5-222ENST00000615540 ZMYM3Q14202 1370 aa10.84□□□□□ -0.67
PDLIM5-222ENST00000615540 TRPM1Q7Z4N2 1603 aa10.84□□□□□ -0.67
PDLIM5-222ENST00000615540 TRAK2O60296 914 aa10.84□□□□□ -0.67
PDLIM5-222ENST00000615540 HSP90AB4PQ58FF6 505 aa10.84□□□□□ -0.67
PDLIM5-222ENST00000615540 IL27Q8NEV9 243 aa10.84□□□□□ -0.67
PDLIM5-222ENST00000615540 KIF1BO60333 1816 aa10.84□□□□□ -0.67
PDLIM5-222ENST00000615540 IQGAP3Q86VI3 1631 aa10.84□□□□□ -0.67
PDLIM5-222ENST00000615540 PRDM15P57071 1507 aaPredicted RBP10.84□□□□□ -0.67
PDLIM5-222ENST00000615540 SMC3Q9UQE7 1217 aa10.83□□□□□ -0.67
PDLIM5-222ENST00000615540 PLA2R1Q13018 1463 aa10.83□□□□□ -0.68
PDLIM5-222ENST00000615540 AACSQ86V21 672 aa10.83□□□□□ -0.68
PDLIM5-222ENST00000615540 K7ELQ4 463 aaPredicted RBP10.83□□□□□ -0.68
PDLIM5-222ENST00000615540 CSPP1Q1MSJ5 1256 aa10.83□□□□□ -0.68
PDLIM5-222ENST00000615540 C8orf34Q49A92 452 aa10.83□□□□□ -0.68
PDLIM5-222ENST00000615540 CWC27Q6UX04 472 aaKnown RBP10.83□□□□□ -0.68
PDLIM5-222ENST00000615540 MRPL50Q8N5N7 158 aaKnown RBP10.83□□□□□ -0.68
PDLIM5-222ENST00000615540 CCDC85AQ96PX6 553 aaPredicted RBP10.83□□□□□ -0.68
PDLIM5-222ENST00000615540 LRRFIP2Q9Y608 721 aaKnown RBP10.83□□□□□ -0.68
PDLIM5-222ENST00000615540 SPG7Q9UQ90 795 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms