RNA–Protein interactions for RNA: ENST00000611950.1

PCDHGC3-202, Transcript of protocadherin gamma subfamily C, 3, humanhuman

APPRIS ALT2 BASIC

Gene PCDHGC3, Length 2,849 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-202ENST00000611950 CCDC9Q9Y3X0 531 aaKnown RBP13.59□□□□□ -0.23
PCDHGC3-202ENST00000611950 ROBO1Q9Y6N7 1651 aa13.58□□□□□ -0.23
PCDHGC3-202ENST00000611950 U2AF1L5P0DN76 240 aaPredicted RBP13.58□□□□□ -0.24
PCDHGC3-202ENST00000611950 KCNA6P17658 529 aa13.58□□□□□ -0.24
PCDHGC3-202ENST00000611950 U2AF1Q01081 240 aaKnown RBP eCLIP13.58□□□□□ -0.24
PCDHGC3-202ENST00000611950 POTEAQ6S8J7 498 aa13.58□□□□□ -0.24
PCDHGC3-202ENST00000611950 CGNL1Q0VF96 1302 aa13.58□□□□□ -0.24
PCDHGC3-202ENST00000611950 TSR2Q969E8 191 aaKnown RBP13.58□□□□□ -0.24
PCDHGC3-202ENST00000611950 EVC2Q86UK5 1308 aa13.57□□□□□ -0.24
PCDHGC3-202ENST00000611950 U2SURPO15042 1029 aaKnown RBP13.57□□□□□ -0.24
PCDHGC3-202ENST00000611950 NGEFQ8N5V2 710 aa13.57□□□□□ -0.24
PCDHGC3-202ENST00000611950 PCDHB15Q9Y5E8 787 aa13.57□□□□□ -0.24
PCDHGC3-202ENST00000611950 ANKRD36BQ8N2N9 1353 aa13.56□□□□□ -0.24
PCDHGC3-202ENST00000611950 GSE1Q14687 1217 aa13.56□□□□□ -0.24
PCDHGC3-202ENST00000611950 RUNDC1Q96C34 613 aa13.55□□□□□ -0.24
PCDHGC3-202ENST00000611950 MYO5BQ9ULV0 1848 aa13.55□□□□□ -0.24
PCDHGC3-202ENST00000611950 RARSP54136 660 aaKnown RBP13.55□□□□□ -0.24
PCDHGC3-202ENST00000611950 TICAM2Q86XR7 235 aa13.55□□□□□ -0.24
PCDHGC3-202ENST00000611950 TMEM51Q9NW97 253 aa13.54□□□□□ -0.24
PCDHGC3-202ENST00000611950 CFAP44Q96MT7 982 aa13.54□□□□□ -0.24
PCDHGC3-202ENST00000611950 GGNBP2Q9H3C7 697 aa13.54□□□□□ -0.24
PCDHGC3-202ENST00000611950 PUS7Q96PZ0 661 aaKnown RBP13.54□□□□□ -0.24
PCDHGC3-202ENST00000611950 MSH6P52701 1360 aa13.53□□□□□ -0.24
PCDHGC3-202ENST00000611950 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.53□□□□□ -0.24
PCDHGC3-202ENST00000611950 ZFYVE9O95405 1425 aa13.53□□□□□ -0.24
PCDHGC3-202ENST00000611950 FBLN1P23142 703 aa13.53□□□□□ -0.24
PCDHGC3-202ENST00000611950 SLC52A1Q9NWF4 448 aa13.53□□□□□ -0.24
PCDHGC3-202ENST00000611950 A0A1W2PP64 1363 aa13.52□□□□□ -0.24
PCDHGC3-202ENST00000611950 TMEM131LA2VDJ0 1609 aa13.52□□□□□ -0.25
PCDHGC3-202ENST00000611950 SRPK2P78362 688 aaKnown RBP13.52□□□□□ -0.25
PCDHGC3-202ENST00000611950 SLAIN2Q9P270 581 aa13.52□□□□□ -0.25
PCDHGC3-202ENST00000611950 PHLPP1O60346 1717 aa13.52□□□□□ -0.25
PCDHGC3-202ENST00000611950 USP19O94966 1318 aa13.52□□□□□ -0.25
PCDHGC3-202ENST00000611950 RGS22Q8NE09 1264 aa13.51□□□□□ -0.25
PCDHGC3-202ENST00000611950 NSD2O96028 1365 aa13.51□□□□□ -0.25
PCDHGC3-202ENST00000611950 CFAP53Q96M91 514 aa13.51□□□□□ -0.25
PCDHGC3-202ENST00000611950 PDZRN3Q9UPQ7 1066 aa13.51□□□□□ -0.25
PCDHGC3-202ENST00000611950 SETD1AO15047 1707 aaKnown RBP13.5□□□□□ -0.25
PCDHGC3-202ENST00000611950 PDE3AQ14432 1141 aa13.5□□□□□ -0.25
PCDHGC3-202ENST00000611950 ABCC11Q96J66 1382 aa13.5□□□□□ -0.25
PCDHGC3-202ENST00000611950 PDCL3Q9H2J4 239 aa13.49□□□□□ -0.25
PCDHGC3-202ENST00000611950 MINK1Q8N4C8 1332 aaPredicted RBP13.49□□□□□ -0.25
PCDHGC3-202ENST00000611950 WDR63Q8IWG1 891 aa13.49□□□□□ -0.25
PCDHGC3-202ENST00000611950 PRAM1Q96QH2 718 aa13.49□□□□□ -0.25
PCDHGC3-202ENST00000611950 NWD1Q149M9 1564 aa13.49□□□□□ -0.25
PCDHGC3-202ENST00000611950 CCDC27Q2M243 656 aa13.48□□□□□ -0.25
PCDHGC3-202ENST00000611950 TMED8Q6PL24 325 aaPredicted RBP13.48□□□□□ -0.25
PCDHGC3-202ENST00000611950 SMC4Q9NTJ3 1288 aa13.48□□□□□ -0.25
PCDHGC3-202ENST00000611950 POGKQ9P215 609 aa13.48□□□□□ -0.25
PCDHGC3-202ENST00000611950 JCADQ9P266 1359 aa13.48□□□□□ -0.25
PCDHGC3-202ENST00000611950 NINLQ9Y2I6 1382 aa13.48□□□□□ -0.25
PCDHGC3-202ENST00000611950 YTHDC2Q9H6S0 1430 aaKnown RBP13.48□□□□□ -0.25
PCDHGC3-202ENST00000611950 CHD2O14647 1828 aaKnown RBP13.47□□□□□ -0.25
PCDHGC3-202ENST00000611950 EXOSC9Q06265 439 aaKnown RBP13.47□□□□□ -0.25
PCDHGC3-202ENST00000611950 CD163L1Q9NR16 1453 aa13.47□□□□□ -0.25
PCDHGC3-202ENST00000611950 ITPRIPQ8IWB1 547 aa13.47□□□□□ -0.25
PCDHGC3-202ENST00000611950 ADGRB2O60241 1585 aa13.46□□□□□ -0.25
PCDHGC3-202ENST00000611950 MEX3CQ5U5Q3 659 aaKnown RBP13.46□□□□□ -0.25
PCDHGC3-202ENST00000611950 RIMS2Q9UQ26 1411 aa13.46□□□□□ -0.25
PCDHGC3-202ENST00000611950 HDGFP51858 240 aaKnown RBP13.46□□□□□ -0.25
PCDHGC3-202ENST00000611950 MFAP1P55081 439 aaKnown RBP13.45□□□□□ -0.26
PCDHGC3-202ENST00000611950 COL3A1P02461 1466 aaPredicted RBP13.45□□□□□ -0.26
PCDHGC3-202ENST00000611950 PLEKHG1Q9ULL1 1385 aa13.45□□□□□ -0.26
PCDHGC3-202ENST00000611950 FYB1O15117 783 aa13.45□□□□□ -0.26
PCDHGC3-202ENST00000611950 GRIPAP1Q4V328 841 aa13.45□□□□□ -0.26
PCDHGC3-202ENST00000611950 MAPK8IP3Q9UPT6 1336 aa13.45□□□□□ -0.26
PCDHGC3-202ENST00000611950 ZNF592Q92610 1267 aa13.45□□□□□ -0.26
PCDHGC3-202ENST00000611950 ATAD2Q6PL18 1390 aa13.44□□□□□ -0.26
PCDHGC3-202ENST00000611950 VGLL3A8MV65 326 aa13.44□□□□□ -0.26
PCDHGC3-202ENST00000611950 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.44□□□□□ -0.26
PCDHGC3-202ENST00000611950 PMFBP1Q8TBY8 1022 aa13.44□□□□□ -0.26
PCDHGC3-202ENST00000611950 PLEKHF1Q96S99 279 aa13.44□□□□□ -0.26
PCDHGC3-202ENST00000611950 FAM43BQ6ZT52 329 aaPredicted RBP13.43□□□□□ -0.26
PCDHGC3-202ENST00000611950 GZF1Q9H116 711 aaPredicted RBP13.43□□□□□ -0.26
PCDHGC3-202ENST00000611950 ELL2O00472 640 aaPredicted RBP13.43□□□□□ -0.26
PCDHGC3-202ENST00000611950 DZIP1LQ8IYY4 767 aaKnown RBP13.43□□□□□ -0.26
PCDHGC3-202ENST00000611950 SSH1Q8WYL5 1049 aa13.43□□□□□ -0.26
PCDHGC3-202ENST00000611950 MYH16Q9H6N6 1097 aa13.43□□□□□ -0.26
PCDHGC3-202ENST00000611950 UPF2Q9HAU5 1272 aaKnown RBP13.43□□□□□ -0.26
PCDHGC3-202ENST00000611950 COL16A1Q07092 1604 aaPredicted RBP13.42□□□□□ -0.26
PCDHGC3-202ENST00000611950 ATF3P18847 181 aa13.42□□□□□ -0.26
PCDHGC3-202ENST00000611950 TRIM27P14373 513 aa13.42□□□□□ -0.26
PCDHGC3-202ENST00000611950 MVPQ14764 893 aaKnown RBP13.42□□□□□ -0.26
PCDHGC3-202ENST00000611950 ZKSCAN2Q63HK3 967 aa13.42□□□□□ -0.26
PCDHGC3-202ENST00000611950 THUMPD2Q9BTF0 503 aaKnown RBP13.42□□□□□ -0.26
PCDHGC3-202ENST00000611950 RRAGDQ9NQL2 400 aaPredicted RBP13.42□□□□□ -0.26
PCDHGC3-202ENST00000611950 TERF2IPQ9NYB0 399 aa13.42□□□□□ -0.26
PCDHGC3-202ENST00000611950 TBX22Q9Y458 520 aa13.42□□□□□ -0.26
PCDHGC3-202ENST00000611950 PPP4R3CPQ6ZMV5 832 aa13.41□□□□□ -0.26
PCDHGC3-202ENST00000611950 CDK19Q9BWU1 502 aa13.41□□□□□ -0.26
PCDHGC3-202ENST00000611950 RWDD1Q9H446 243 aaPredicted RBP13.41□□□□□ -0.26
PCDHGC3-202ENST00000611950 FAM193AP78312 1265 aa13.41□□□□□ -0.26
PCDHGC3-202ENST00000611950 BECN1Q14457 450 aa13.41□□□□□ -0.26
PCDHGC3-202ENST00000611950 CADPS2Q86UW7 1296 aa13.41□□□□□ -0.26
PCDHGC3-202ENST00000611950 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.41□□□□□ -0.26
PCDHGC3-202ENST00000611950 ANKRD26Q9UPS8 1709 aa13.41□□□□□ -0.26
PCDHGC3-202ENST00000611950 RIPK4P57078 832 aa13.4□□□□□ -0.26
PCDHGC3-202ENST00000611950 TBC1D2Q9BYX2 928 aa13.4□□□□□ -0.26
PCDHGC3-202ENST00000611950 CABP1Q9NZU7 370 aa13.4□□□□□ -0.26
PCDHGC3-202ENST00000611950 NOB1Q9ULX3 412 aaKnown RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms