RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 ARHGEF25Q86VW2 580 aa14.06□□□□□ -0.16
SYNE1-240ENST00000610489 PRDM11Q9NQV5 511 aa14.06□□□□□ -0.16
SYNE1-240ENST00000610489 PEAK1Q9H792 1746 aa14.06□□□□□ -0.16
SYNE1-240ENST00000610489 PARD3Q8TEW0 1356 aa14.06□□□□□ -0.16
SYNE1-240ENST00000610489 MEX3CQ5U5Q3 659 aaKnown RBP14.06□□□□□ -0.16
SYNE1-240ENST00000610489 RRS1Q15050 365 aaKnown RBP14.05□□□□□ -0.16
SYNE1-240ENST00000610489 NRAPQ86VF7 1730 aa14.05□□□□□ -0.16
SYNE1-240ENST00000610489 MAP3K19Q56UN5 1328 aa14.05□□□□□ -0.16
SYNE1-240ENST00000610489 ZBTB7CA1YPR0 619 aa14.04□□□□□ -0.16
SYNE1-240ENST00000610489 FAM83GA6ND36 823 aa14.04□□□□□ -0.16
SYNE1-240ENST00000610489 CHRNA2Q15822 529 aa14.04□□□□□ -0.16
SYNE1-240ENST00000610489 SMG6Q86US8 1419 aaKnown RBP14.04□□□□□ -0.16
SYNE1-240ENST00000610489 C8orf37Q96NL8 207 aa14.04□□□□□ -0.16
SYNE1-240ENST00000610489 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.04□□□□□ -0.16
SYNE1-240ENST00000610489 SLIT2O94813 1529 aa14.04□□□□□ -0.16
SYNE1-240ENST00000610489 RTL1A6NKG5 1358 aa14.03□□□□□ -0.16
SYNE1-240ENST00000610489 CAMTA1Q9Y6Y1 1673 aa14.03□□□□□ -0.16
SYNE1-240ENST00000610489 EMILIN1Q9Y6C2 1016 aa14.03□□□□□ -0.16
SYNE1-240ENST00000610489 KIF24Q5T7B8 1368 aa14.03□□□□□ -0.16
SYNE1-240ENST00000610489 RALBP1Q15311 655 aa14.02□□□□□ -0.16
SYNE1-240ENST00000610489 NGLY1Q96IV0 654 aa14.02□□□□□ -0.16
SYNE1-240ENST00000610489 POLKQ9UBT6 870 aa14.02□□□□□ -0.16
SYNE1-240ENST00000610489 FLT4P35916 1363 aa14.01□□□□□ -0.17
SYNE1-240ENST00000610489 CDK12Q9NYV4 1490 aaPredicted RBP14.01□□□□□ -0.17
SYNE1-240ENST00000610489 AMPHP49418 695 aa14.01□□□□□ -0.17
SYNE1-240ENST00000610489 FNBP4Q8N3X1 1017 aaPredicted RBP14.01□□□□□ -0.17
SYNE1-240ENST00000610489 IP6K1Q92551 441 aa14.01□□□□□ -0.17
SYNE1-240ENST00000610489 PRKRIP1Q9H875 184 aaPredicted RBP14.01□□□□□ -0.17
SYNE1-240ENST00000610489 ATF5Q9Y2D1 282 aaPredicted RBP14.01□□□□□ -0.17
SYNE1-240ENST00000610489 BLMP54132 1417 aaPredicted RBP14□□□□□ -0.17
SYNE1-240ENST00000610489 COL5A2P05997 1499 aaPredicted RBP14□□□□□ -0.17
SYNE1-240ENST00000610489 PPP2R1AP30153 589 aa14□□□□□ -0.17
SYNE1-240ENST00000610489 HOXC9P31274 260 aa14□□□□□ -0.17
SYNE1-240ENST00000610489 BTG4Q9NY30 223 aa14□□□□□ -0.17
SYNE1-240ENST00000610489 AXIN2Q9Y2T1 843 aa14□□□□□ -0.17
SYNE1-240ENST00000610489 FAM208AQ9UK61 1670 aaKnown RBP14□□□□□ -0.17
SYNE1-240ENST00000610489 AFF2P51816 1311 aa14□□□□□ -0.17
SYNE1-240ENST00000610489 BCL9LQ86UU0 1499 aa14□□□□□ -0.17
SYNE1-240ENST00000610489 PPM1GO15355 546 aaPredicted RBP13.99□□□□□ -0.17
SYNE1-240ENST00000610489 INSRP06213 1382 aa13.98□□□□□ -0.17
SYNE1-240ENST00000610489 ANP32CO43423 234 aa13.98□□□□□ -0.17
SYNE1-240ENST00000610489 MTHFSP49914 203 aa13.98□□□□□ -0.17
SYNE1-240ENST00000610489 RGPD2P0DJD1 1756 aa13.98□□□□□ -0.17
SYNE1-240ENST00000610489 HSP90AB2PQ58FF8 381 aa13.97□□□□□ -0.17
SYNE1-240ENST00000610489 UNC5CLQ8IV45 518 aa13.97□□□□□ -0.17
SYNE1-240ENST00000610489 USP21Q9UK80 565 aa13.97□□□□□ -0.17
SYNE1-240ENST00000610489 MYBBP1AQ9BQG0 1328 aaKnown RBP13.97□□□□□ -0.17
SYNE1-240ENST00000610489 DIEXFQ68CQ4 756 aaKnown RBP13.96□□□□□ -0.17
SYNE1-240ENST00000610489 ERBB3P21860 1342 aa13.96□□□□□ -0.17
SYNE1-240ENST00000610489 COL3A1P02461 1466 aaPredicted RBP13.96□□□□□ -0.17
SYNE1-240ENST00000610489 ANKRD24Q8TF21 1146 aa13.95□□□□□ -0.18
SYNE1-240ENST00000610489 STRN4Q9NRL3 753 aa13.95□□□□□ -0.18
SYNE1-240ENST00000610489 WDR17Q8IZU2 1322 aa13.95□□□□□ -0.18
SYNE1-240ENST00000610489 EVA1CP58658 441 aa13.94□□□□□ -0.18
SYNE1-240ENST00000610489 ATRNO75882 1429 aa13.94□□□□□ -0.18
SYNE1-240ENST00000610489 ZNF772Q68DY9 489 aaPredicted RBP13.94□□□□□ -0.18
SYNE1-240ENST00000610489 LTV1Q96GA3 475 aaPredicted RBP13.94□□□□□ -0.18
SYNE1-240ENST00000610489 CRB1P82279 1406 aa13.93□□□□□ -0.18
SYNE1-240ENST00000610489 RGPD1P0DJD0 1748 aa13.93□□□□□ -0.18
SYNE1-240ENST00000610489 CSB-PGBD3P0DP91 1061 aa13.93□□□□□ -0.18
SYNE1-240ENST00000610489 VPS72Q15906 364 aa13.93□□□□□ -0.18
SYNE1-240ENST00000610489 LARP1Q6PKG0 1096 aaKnown RBP13.93□□□□□ -0.18
SYNE1-240ENST00000610489 RGS17Q9UGC6 210 aaPredicted RBP13.93□□□□□ -0.18
SYNE1-240ENST00000610489 WNK3Q9BYP7 1800 aa13.93□□□□□ -0.18
SYNE1-240ENST00000610489 EIF4A2Q14240 407 aaKnown RBP13.92□□□□□ -0.18
SYNE1-240ENST00000610489 CFAP53Q96M91 514 aa13.92□□□□□ -0.18
SYNE1-240ENST00000610489 TRPC5Q9UL62 973 aaPredicted RBP13.92□□□□□ -0.18
SYNE1-240ENST00000610489 GLI3P10071 1580 aa13.92□□□□□ -0.18
SYNE1-240ENST00000610489 TOM1L2Q6ZVM7 507 aa13.91□□□□□ -0.18
SYNE1-240ENST00000610489 SPATA31A5Q5VU36 1347 aa13.91□□□□□ -0.18
SYNE1-240ENST00000610489 SPATA31A7Q8IWB4 1347 aa13.91□□□□□ -0.18
SYNE1-240ENST00000610489 DIAPH1O60610 1272 aaKnown RBP13.9□□□□□ -0.18
SYNE1-240ENST00000610489 IL13P35225 146 aa13.9□□□□□ -0.18
SYNE1-240ENST00000610489 QTRT2Q9H974 415 aaKnown RBP13.9□□□□□ -0.18
SYNE1-240ENST00000610489 NLRP2Q9NX02 1062 aa13.9□□□□□ -0.18
SYNE1-240ENST00000610489 CCDC9Q9Y3X0 531 aaKnown RBP13.9□□□□□ -0.18
SYNE1-240ENST00000610489 SPATA31A1Q5TZJ5 1347 aa13.89□□□□□ -0.19
SYNE1-240ENST00000610489 CARD10Q9BWT7 1032 aa13.89□□□□□ -0.19
SYNE1-240ENST00000610489 NCAPD2Q15021 1401 aa13.89□□□□□ -0.19
SYNE1-240ENST00000610489 DCAF8L1A6NGE4 600 aa13.88□□□□□ -0.19
SYNE1-240ENST00000610489 NBPF6Q5VWK0 638 aa13.88□□□□□ -0.19
SYNE1-240ENST00000610489 GJD4Q96KN9 370 aaPredicted RBP13.88□□□□□ -0.19
SYNE1-240ENST00000610489 NBPF4Q96M43 638 aa13.88□□□□□ -0.19
SYNE1-240ENST00000610489 EYA1Q99502 592 aa13.88□□□□□ -0.19
SYNE1-240ENST00000610489 USP35Q9P2H5 1018 aa13.88□□□□□ -0.19
SYNE1-240ENST00000610489 IGSF1Q8N6C5 1336 aa13.87□□□□□ -0.19
SYNE1-240ENST00000610489 POTEAQ6S8J7 498 aa13.87□□□□□ -0.19
SYNE1-240ENST00000610489 TCP11L2Q8N4U5 519 aa13.86□□□□□ -0.19
SYNE1-240ENST00000610489 PARP4Q9UKK3 1724 aaKnown RBP13.86□□□□□ -0.19
SYNE1-240ENST00000610489 THSD7AQ9UPZ6 1657 aa13.86□□□□□ -0.19
SYNE1-240ENST00000610489 RBM6P78332 1123 aaKnown RBP13.86□□□□□ -0.19
SYNE1-240ENST00000610489 USHBP1Q8N6Y0 703 aa13.86□□□□□ -0.19
SYNE1-240ENST00000610489 THRAP3Q9Y2W1 955 aaKnown RBP13.86□□□□□ -0.19
SYNE1-240ENST00000610489 DISP2A7MBM2 1401 aa13.85□□□□□ -0.19
SYNE1-240ENST00000610489 CCDC184Q52MB2 194 aa13.85□□□□□ -0.19
SYNE1-240ENST00000610489 NUDCQ9Y266 331 aa13.85□□□□□ -0.19
SYNE1-240ENST00000610489 KDRP35968 1356 aa13.85□□□□□ -0.19
SYNE1-240ENST00000610489 U2SURPO15042 1029 aaKnown RBP13.84□□□□□ -0.19
SYNE1-240ENST00000610489 BARGINQ6ZT62 677 aa13.84□□□□□ -0.19
SYNE1-240ENST00000610489 MEGF6O75095 1541 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms