RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 SBNO2Q9Y2G9 1366 aa22.38■■□□□ 1.17
SHKBP1-228ENST00000602239 PTF1AQ7RTS3 328 aa22.38■■□□□ 1.17
SHKBP1-228ENST00000602239 SLC12A5Q9H2X9 1139 aa22.38■■□□□ 1.17
SHKBP1-228ENST00000602239 RGPD5Q99666 1765 aa22.38■■□□□ 1.17
SHKBP1-228ENST00000602239 TMC1Q8TDI8 760 aa22.37■■□□□ 1.17
SHKBP1-228ENST00000602239 CD163L1Q9NR16 1453 aa22.36■■□□□ 1.17
SHKBP1-228ENST00000602239 CSB-PGBD3P0DP91 1061 aa22.36■■□□□ 1.17
SHKBP1-228ENST00000602239 NME9Q86XW9 330 aa22.36■■□□□ 1.17
SHKBP1-228ENST00000602239 MARCH10Q8NA82 808 aaPredicted RBP22.36■■□□□ 1.17
SHKBP1-228ENST00000602239 TONSLQ96HA7 1378 aa22.36■■□□□ 1.17
SHKBP1-228ENST00000602239 OVOS2A0A0G2JMS6 1433 aa22.35■■□□□ 1.17
SHKBP1-228ENST00000602239 OVOS2A0A0J9YW53 1432 aa22.35■■□□□ 1.17
SHKBP1-228ENST00000602239 OVOS2Q6IE36 1432 aa22.35■■□□□ 1.17
SHKBP1-228ENST00000602239 CARD10Q9BWT7 1032 aa22.35■■□□□ 1.17
SHKBP1-228ENST00000602239 NFAT5O94916 1531 aa22.35■■□□□ 1.17
SHKBP1-228ENST00000602239 PEAK1Q9H792 1746 aa22.34■■□□□ 1.17
SHKBP1-228ENST00000602239 LRRC37A3O60309 1634 aa22.34■■□□□ 1.17
SHKBP1-228ENST00000602239 RREB1Q92766 1687 aa22.33■■□□□ 1.17
SHKBP1-228ENST00000602239 C11orf95C9JLR9 678 aaPredicted RBP22.33■■□□□ 1.17
SHKBP1-228ENST00000602239 USP31Q70CQ4 1352 aa22.33■■□□□ 1.17
SHKBP1-228ENST00000602239 MON2Q7Z3U7 1717 aa22.32■■□□□ 1.16
SHKBP1-228ENST00000602239 NBPF14Q5TI25 921 aa22.32■■□□□ 1.16
SHKBP1-228ENST00000602239 NUP188Q5SRE5 1749 aa22.31■■□□□ 1.16
SHKBP1-228ENST00000602239 CDCA7Q9BWT1 371 aaPredicted RBP22.31■■□□□ 1.16
SHKBP1-228ENST00000602239 PLSCR1O15162 318 aa22.3■■□□□ 1.16
SHKBP1-228ENST00000602239 HDGFL2Q7Z4V5 671 aaPredicted RBP22.3■■□□□ 1.16
SHKBP1-228ENST00000602239 BCL11BQ9C0K0 894 aaPredicted RBP22.3■■□□□ 1.16
SHKBP1-228ENST00000602239 SBF2Q86WG5 1849 aa22.29■■□□□ 1.16
SHKBP1-228ENST00000602239 EXOC5O00471 708 aa22.28■■□□□ 1.16
SHKBP1-228ENST00000602239 PROM2Q8N271 834 aa22.28■■□□□ 1.16
SHKBP1-228ENST00000602239 TESK2Q96S53 571 aa22.28■■□□□ 1.16
SHKBP1-228ENST00000602239 ST20-MTHFSA0A0A6YYL1 179 aa22.27■■□□□ 1.16
SHKBP1-228ENST00000602239 WNK3Q9BYP7 1800 aa22.27■■□□□ 1.15
SHKBP1-228ENST00000602239 A0A1W2PP64 1363 aa22.26■■□□□ 1.15
SHKBP1-228ENST00000602239 PUS7Q96PZ0 661 aaKnown RBP22.26■■□□□ 1.15
SHKBP1-228ENST00000602239 TERF2IPQ9NYB0 399 aa22.26■■□□□ 1.15
SHKBP1-228ENST00000602239 EDC4Q6P2E9 1401 aaKnown RBP22.25■■□□□ 1.15
SHKBP1-228ENST00000602239 NLRP2Q9NX02 1062 aa22.25■■□□□ 1.15
SHKBP1-228ENST00000602239 ERBB3P21860 1342 aa22.25■■□□□ 1.15
SHKBP1-228ENST00000602239 CCDC7Q96M83 1385 aa22.25■■□□□ 1.15
SHKBP1-228ENST00000602239 BCL9O00512 1426 aa22.24■■□□□ 1.15
SHKBP1-228ENST00000602239 ANO8Q9HCE9 1232 aaPredicted RBP22.24■■□□□ 1.15
SHKBP1-228ENST00000602239 KCNQ2O43526 872 aa22.23■■□□□ 1.15
SHKBP1-228ENST00000602239 USP54Q70EL1 1684 aa22.23■■□□□ 1.15
SHKBP1-228ENST00000602239 ABCC6O95255 1503 aa22.22■■□□□ 1.15
SHKBP1-228ENST00000602239 ANKRD24Q8TF21 1146 aa22.22■■□□□ 1.15
SHKBP1-228ENST00000602239 TRIM26Q12899 539 aaPredicted RBP22.21■■□□□ 1.15
SHKBP1-228ENST00000602239 FBLN1P23142 703 aa22.2■■□□□ 1.14
SHKBP1-228ENST00000602239 PDGFDQ9GZP0 370 aaPredicted RBP22.2■■□□□ 1.14
SHKBP1-228ENST00000602239 LTN1O94822 1766 aa22.2■■□□□ 1.14
SHKBP1-228ENST00000602239 ACSBG1Q96GR2 724 aa22.19■■□□□ 1.14
SHKBP1-228ENST00000602239 SPON1Q9HCB6 807 aa22.19■■□□□ 1.14
SHKBP1-228ENST00000602239 TNS2Q63HR2 1409 aa22.18■■□□□ 1.14
SHKBP1-228ENST00000602239 IL2RBP14784 551 aa22.18■■□□□ 1.14
SHKBP1-228ENST00000602239 TXNRD1Q16881 649 aa22.18■■□□□ 1.14
SHKBP1-228ENST00000602239 RGPD3A6NKT7 1758 aaPredicted RBP22.17■■□□□ 1.14
SHKBP1-228ENST00000602239 RGPD4Q7Z3J3 1758 aa22.17■■□□□ 1.14
SHKBP1-228ENST00000602239 IP6K1Q92551 441 aa22.17■■□□□ 1.14
SHKBP1-228ENST00000602239 LTV1Q96GA3 475 aaPredicted RBP22.16■■□□□ 1.14
SHKBP1-228ENST00000602239 NINLQ9Y2I6 1382 aa22.13■■□□□ 1.13
SHKBP1-228ENST00000602239 COG3Q96JB2 828 aa22.13■■□□□ 1.13
SHKBP1-228ENST00000602239 MAP3K19Q56UN5 1328 aa22.12■■□□□ 1.13
SHKBP1-228ENST00000602239 SLC24A1O60721 1099 aa22.12■■□□□ 1.13
SHKBP1-228ENST00000602239 PPP1R1BQ9UD71 204 aaPredicted RBP22.12■■□□□ 1.13
SHKBP1-228ENST00000602239 ZBTB7AO95365 584 aa22.1■■□□□ 1.13
SHKBP1-228ENST00000602239 HOXC9P31274 260 aa22.1■■□□□ 1.13
SHKBP1-228ENST00000602239 AMPHP49418 695 aa22.09■■□□□ 1.13
SHKBP1-228ENST00000602239 TMF1P82094 1093 aa22.09■■□□□ 1.13
SHKBP1-228ENST00000602239 SLC15A2Q16348 729 aa22.09■■□□□ 1.13
SHKBP1-228ENST00000602239 DDX54Q8TDD1 881 aaKnown RBP22.09■■□□□ 1.13
SHKBP1-228ENST00000602239 STK32BQ9NY57 414 aa22.09■■□□□ 1.13
SHKBP1-228ENST00000602239 ANKRD36BQ8N2N9 1353 aa22.09■■□□□ 1.13
SHKBP1-228ENST00000602239 USP47Q96K76 1375 aa22.09■■□□□ 1.13
SHKBP1-228ENST00000602239 CASZ1Q86V15 1759 aa22.08■■□□□ 1.13
SHKBP1-228ENST00000602239 FYB1O15117 783 aa22.08■■□□□ 1.13
SHKBP1-228ENST00000602239 GGNBP2Q9H3C7 697 aa22.08■■□□□ 1.13
SHKBP1-228ENST00000602239 ATF5Q9Y2D1 282 aaPredicted RBP22.08■■□□□ 1.13
SHKBP1-228ENST00000602239 NHSQ6T4R5 1651 aa22.07■■□□□ 1.12
SHKBP1-228ENST00000602239 KAT6BQ8WYB5 2073 aa22.07■■□□□ 1.12
SHKBP1-228ENST00000602239 RRS1Q15050 365 aaKnown RBP22.06■■□□□ 1.12
SHKBP1-228ENST00000602239 PTGER2P43116 358 aa22.05■■□□□ 1.12
SHKBP1-228ENST00000602239 LRRC4BQ9NT99 713 aa22.04■■□□□ 1.12
SHKBP1-228ENST00000602239 BTAF1O14981 1849 aa22.02■■□□□ 1.12
SHKBP1-228ENST00000602239 NBPF6Q5VWK0 638 aa22.02■■□□□ 1.12
SHKBP1-228ENST00000602239 NBPF4Q96M43 638 aa22.02■■□□□ 1.12
SHKBP1-228ENST00000602239 RGPD2P0DJD1 1756 aa22.01■■□□□ 1.11
SHKBP1-228ENST00000602239 PRIM1P49642 420 aaKnown RBP22■■□□□ 1.11
SHKBP1-228ENST00000602239 ZNF827Q17R98 1081 aa22■■□□□ 1.11
SHKBP1-228ENST00000602239 ZCRB1Q8TBF4 217 aaKnown RBP22■■□□□ 1.11
SHKBP1-228ENST00000602239 CARD14Q9BXL6 1004 aa22■■□□□ 1.11
SHKBP1-228ENST00000602239 FAM208AQ9UK61 1670 aaKnown RBP21.99■■□□□ 1.11
SHKBP1-228ENST00000602239 USHBP1Q8N6Y0 703 aa21.99■■□□□ 1.11
SHKBP1-228ENST00000602239 KCNQ4P56696 695 aa21.98■■□□□ 1.11
SHKBP1-228ENST00000602239 SYTL4Q96C24 671 aaPredicted RBP21.98■■□□□ 1.11
SHKBP1-228ENST00000602239 SGIP1Q9BQI5 828 aa21.98■■□□□ 1.11
SHKBP1-228ENST00000602239 MEGF6O75095 1541 aa21.97■■□□□ 1.11
SHKBP1-228ENST00000602239 CDCA8Q53HL2 280 aa21.97■■□□□ 1.11
SHKBP1-228ENST00000602239 HSP90AB2PQ58FF8 381 aa21.97■■□□□ 1.11
SHKBP1-228ENST00000602239 MTFR1LQ9H019 292 aa21.97■■□□□ 1.11
SHKBP1-228ENST00000602239 PAPPAQ13219 1627 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms