RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 KINO60870 393 aaKnown RBP24.32■■□□□ 1.48
UPF1-207ENST00000599848 CAVIN4Q5BKX8 364 aa24.32■■□□□ 1.48
UPF1-207ENST00000599848 PPP4R3AQ6IN85 833 aa24.32■■□□□ 1.48
UPF1-207ENST00000599848 ATF7IPQ6VMQ6 1270 aa24.32■■□□□ 1.48
UPF1-207ENST00000599848 LNPKQ9C0E8 428 aa24.32■■□□□ 1.48
UPF1-207ENST00000599848 RTN4Q9NQC3 1192 aaKnown RBP24.32■■□□□ 1.48
UPF1-207ENST00000599848 PDE4AP27815 886 aa24.31■■□□□ 1.48
UPF1-207ENST00000599848 ZRSR2Q15696 482 aaKnown RBP24.31■■□□□ 1.48
UPF1-207ENST00000599848 FOXD4L6Q3SYB3 417 aaPredicted RBP24.31■■□□□ 1.48
UPF1-207ENST00000599848 FOXD4L3Q6VB84 417 aaPredicted RBP24.31■■□□□ 1.48
UPF1-207ENST00000599848 RAI14Q9P0K7 980 aa24.31■■□□□ 1.48
UPF1-207ENST00000599848 LRRC9Q6ZRR7 1453 aa24.31■■□□□ 1.48
UPF1-207ENST00000599848 UBAC1Q9BSL1 405 aa24.31■■□□□ 1.48
UPF1-207ENST00000599848 BTBD11A6QL63 1104 aa24.31■■□□□ 1.48
UPF1-207ENST00000599848 DEKP35659 375 aaKnown RBP24.31■■□□□ 1.48
UPF1-207ENST00000599848 TEX13AQ9BXU3 409 aaPredicted RBP24.31■■□□□ 1.48
UPF1-207ENST00000599848 ZNF76P36508 570 aa24.3■■□□□ 1.48
UPF1-207ENST00000599848 EHBP1L1Q8N3D4 1523 aa24.3■■□□□ 1.48
UPF1-207ENST00000599848 ERCC4Q92889 916 aaPredicted RBP24.3■■□□□ 1.48
UPF1-207ENST00000599848 ZNHIT6Q9NWK9 470 aaKnown RBP24.3■■□□□ 1.48
UPF1-207ENST00000599848 EPRSP07814 1512 aaKnown RBP24.3■■□□□ 1.48
UPF1-207ENST00000599848 TOM1O60784 492 aa24.3■■□□□ 1.48
UPF1-207ENST00000599848 IFIT1P09914 478 aaKnown RBP24.29■■□□□ 1.48
UPF1-207ENST00000599848 DCTN1Q14203 1278 aa24.28■■□□□ 1.48
UPF1-207ENST00000599848 EHMT1Q9H9B1 1298 aa24.28■■□□□ 1.48
UPF1-207ENST00000599848 A0A087WZG4 1122 aa24.28■■□□□ 1.48
UPF1-207ENST00000599848 TEX35Q5T0J7 233 aa24.28■■□□□ 1.48
UPF1-207ENST00000599848 EXOC6Q8TAG9 804 aa24.28■■□□□ 1.48
UPF1-207ENST00000599848 SLC4A2P04920 1241 aa24.28■■□□□ 1.48
UPF1-207ENST00000599848 LRP2BPQ9P2M1 347 aa24.28■■□□□ 1.48
UPF1-207ENST00000599848 TDO2P48775 406 aa24.27■■□□□ 1.48
UPF1-207ENST00000599848 PAXIP1Q6ZW49 1069 aaPredicted RBP24.27■■□□□ 1.48
UPF1-207ENST00000599848 STK38Q15208 465 aa24.27■■□□□ 1.48
UPF1-207ENST00000599848 KRT32Q14532 448 aa24.27■■□□□ 1.48
UPF1-207ENST00000599848 RAPGEF3O95398 923 aa24.27■■□□□ 1.48
UPF1-207ENST00000599848 CRACR2BQ8N4Y2 399 aaPredicted RBP24.27■■□□□ 1.48
UPF1-207ENST00000599848 AKNAQ7Z591 1439 aa24.26■■□□□ 1.47
UPF1-207ENST00000599848 AEBP1Q8IUX7 1158 aa24.26■■□□□ 1.47
UPF1-207ENST00000599848 MPHOSPH6Q99547 160 aaKnown RBP24.26■■□□□ 1.47
UPF1-207ENST00000599848 MNS1Q8NEH6 495 aa24.26■■□□□ 1.47
UPF1-207ENST00000599848 RPGRQ92834 1020 aaKnown RBP24.26■■□□□ 1.47
UPF1-207ENST00000599848 CFTRP13569 1480 aa24.25■■□□□ 1.47
UPF1-207ENST00000599848 SNAPC4Q5SXM2 1469 aa24.25■■□□□ 1.47
UPF1-207ENST00000599848 CD109Q6YHK3 1445 aa24.25■■□□□ 1.47
UPF1-207ENST00000599848 ERBINQ96RT1 1412 aa24.25■■□□□ 1.47
UPF1-207ENST00000599848 ERLIN2O94905 339 aa24.25■■□□□ 1.47
UPF1-207ENST00000599848 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.25■■□□□ 1.47
UPF1-207ENST00000599848 EXOC5O00471 708 aa24.25■■□□□ 1.47
UPF1-207ENST00000599848 TTLL12Q14166 644 aaPredicted RBP24.25■■□□□ 1.47
UPF1-207ENST00000599848 TMEM87AQ8NBN3 555 aa24.25■■□□□ 1.47
UPF1-207ENST00000599848 LRRCC1Q9C099 1032 aa24.25■■□□□ 1.47
UPF1-207ENST00000599848 FAM13BQ9NYF5 915 aa24.25■■□□□ 1.47
UPF1-207ENST00000599848 POTEJP0CG39 1038 aa24.25■■□□□ 1.47
UPF1-207ENST00000599848 CADPS2Q86UW7 1296 aa24.24■■□□□ 1.47
UPF1-207ENST00000599848 NEBLO76041 1014 aa24.24■■□□□ 1.47
UPF1-207ENST00000599848 HECW1Q76N89 1606 aa24.24■■□□□ 1.47
UPF1-207ENST00000599848 CYP46A1Q9Y6A2 500 aa24.24■■□□□ 1.47
UPF1-207ENST00000599848 FOSBP53539 338 aa24.23■■□□□ 1.47
UPF1-207ENST00000599848 KIAA1107Q9UPP5 1409 aa24.23■■□□□ 1.47
UPF1-207ENST00000599848 GNAT3A8MTJ3 354 aa24.23■■□□□ 1.47
UPF1-207ENST00000599848 WDR63Q8IWG1 891 aa24.23■■□□□ 1.47
UPF1-207ENST00000599848 C22orf23Q9BZE7 217 aa24.23■■□□□ 1.47
UPF1-207ENST00000599848 FCHSD2O94868 740 aa24.23■■□□□ 1.47
UPF1-207ENST00000599848 BICDL1Q6ZP65 573 aa24.23■■□□□ 1.47
UPF1-207ENST00000599848 MBD3O95983 291 aa24.22■■□□□ 1.47
UPF1-207ENST00000599848 CAGE1Q8TC20 777 aa24.22■■□□□ 1.47
UPF1-207ENST00000599848 MYL6BP14649 208 aa24.22■■□□□ 1.47
UPF1-207ENST00000599848 ZC3H6P61129 1189 aaKnown RBP24.22■■□□□ 1.47
UPF1-207ENST00000599848 HSP90B2PQ58FF3 399 aa24.22■■□□□ 1.47
UPF1-207ENST00000599848 ERICH3Q5RHP9 1530 aa24.21■■□□□ 1.47
UPF1-207ENST00000599848 ATP2B1P20020 1258 aa24.21■■□□□ 1.47
UPF1-207ENST00000599848 RABEP1Q15276 862 aa24.21■■□□□ 1.47
UPF1-207ENST00000599848 NUDT16Q96DE0 195 aaKnown RBP24.21■■□□□ 1.47
UPF1-207ENST00000599848 LARP1Q6PKG0 1096 aaKnown RBP24.21■■□□□ 1.47
UPF1-207ENST00000599848 ZNF592Q92610 1267 aa24.21■■□□□ 1.47
UPF1-207ENST00000599848 SMC2O95347 1197 aa24.21■■□□□ 1.47
UPF1-207ENST00000599848 PPP2R1AP30153 589 aa24.21■■□□□ 1.47
UPF1-207ENST00000599848 PHF8Q9UPP1 1060 aa24.2■■□□□ 1.46
UPF1-207ENST00000599848 PPP1R12BO60237 982 aaPredicted RBP24.2■■□□□ 1.46
UPF1-207ENST00000599848 PDE3AQ14432 1141 aa24.2■■□□□ 1.46
UPF1-207ENST00000599848 FBXO3Q9UK99 471 aa24.2■■□□□ 1.46
UPF1-207ENST00000599848 LDHCP07864 332 aa24.19■■□□□ 1.46
UPF1-207ENST00000599848 EXOSC9Q06265 439 aaKnown RBP24.19■■□□□ 1.46
UPF1-207ENST00000599848 SEC63Q9UGP8 760 aaKnown RBP24.19■■□□□ 1.46
UPF1-207ENST00000599848 AIDAQ96BJ3 306 aa24.18■■□□□ 1.46
UPF1-207ENST00000599848 PDILTQ8N807 584 aa24.17■■□□□ 1.46
UPF1-207ENST00000599848 USP5P45974 858 aa24.17■■□□□ 1.46
UPF1-207ENST00000599848 METTL24Q5JXM2 366 aa24.17■■□□□ 1.46
UPF1-207ENST00000599848 CUL5Q93034 780 aa24.17■■□□□ 1.46
UPF1-207ENST00000599848 POLR3DP05423 398 aaPredicted RBP24.17■■□□□ 1.46
UPF1-207ENST00000599848 MATR3P43243 847 aaKnown RBP eCLIP24.17■■□□□ 1.46
UPF1-207ENST00000599848 SCLT1Q96NL6 688 aa24.17■■□□□ 1.46
UPF1-207ENST00000599848 ZHX3Q9H4I2 956 aa24.17■■□□□ 1.46
UPF1-207ENST00000599848 CEP131Q9UPN4 1083 aa24.16■■□□□ 1.46
UPF1-207ENST00000599848 NUP133Q8WUM0 1156 aa24.16■■□□□ 1.46
UPF1-207ENST00000599848 KIAA0586Q9BVV6 1533 aa24.16■■□□□ 1.46
UPF1-207ENST00000599848 FKBP4Q02790 459 aaKnown RBP eCLIP24.16■■□□□ 1.46
UPF1-207ENST00000599848 ANKIB1Q9P2G1 1089 aa24.16■■□□□ 1.46
UPF1-207ENST00000599848 ADAMTS2O95450 1211 aa24.15■■□□□ 1.46
UPF1-207ENST00000599848 CETN2P41208 172 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms