RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 KIAA0232Q92628 1395 aa13.21□□□□□ -0.29
TRIM28-208ENST00000597172 TXNRD1Q16881 649 aa13.21□□□□□ -0.29
TRIM28-208ENST00000597172 YBX3P16989 372 aaKnown RBP eCLIP13.2□□□□□ -0.3
TRIM28-208ENST00000597172 OVOS2A0A0G2JMS6 1433 aa13.2□□□□□ -0.3
TRIM28-208ENST00000597172 OVOS2A0A0J9YW53 1432 aa13.2□□□□□ -0.3
TRIM28-208ENST00000597172 OVOS2Q6IE36 1432 aa13.2□□□□□ -0.3
TRIM28-208ENST00000597172 LARP1Q6PKG0 1096 aaKnown RBP13.19□□□□□ -0.3
TRIM28-208ENST00000597172 PRAM1Q96QH2 718 aa13.19□□□□□ -0.3
TRIM28-208ENST00000597172 THRAP3Q9Y2W1 955 aaKnown RBP13.19□□□□□ -0.3
TRIM28-208ENST00000597172 SSH2Q76I76 1423 aa13.19□□□□□ -0.3
TRIM28-208ENST00000597172 CENPJQ9HC77 1338 aaPredicted RBP13.18□□□□□ -0.3
TRIM28-208ENST00000597172 ZC3H6P61129 1189 aaKnown RBP13.18□□□□□ -0.3
TRIM28-208ENST00000597172 EIF3AQ14152 1382 aaKnown RBP13.18□□□□□ -0.3
TRIM28-208ENST00000597172 SBF2Q86WG5 1849 aa13.18□□□□□ -0.3
TRIM28-208ENST00000597172 NLGN2Q8NFZ4 835 aa13.17□□□□□ -0.3
TRIM28-208ENST00000597172 POGKQ9P215 609 aa13.17□□□□□ -0.3
TRIM28-208ENST00000597172 ALS2Q96Q42 1657 aa13.16□□□□□ -0.3
TRIM28-208ENST00000597172 PAK3O75914 559 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-208ENST00000597172 POLD1P28340 1107 aa13.16□□□□□ -0.3
TRIM28-208ENST00000597172 SAFB2Q14151 953 aaKnown RBP eCLIP13.16□□□□□ -0.3
TRIM28-208ENST00000597172 ARHGEF28Q8N1W1 1705 aaKnown RBP13.16□□□□□ -0.3
TRIM28-208ENST00000597172 TRPM3Q9HCF6 1732 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-208ENST00000597172 PCNTO95613 3336 aa13.16□□□□□ -0.3
TRIM28-208ENST00000597172 KIF3CO14782 793 aa13.15□□□□□ -0.3
TRIM28-208ENST00000597172 JMYQ8N9B5 988 aa13.15□□□□□ -0.3
TRIM28-208ENST00000597172 WWC3Q9ULE0 1092 aa13.15□□□□□ -0.3
TRIM28-208ENST00000597172 PEAK1Q9H792 1746 aa13.15□□□□□ -0.3
TRIM28-208ENST00000597172 WASHC2AQ641Q2 1341 aa13.14□□□□□ -0.31
TRIM28-208ENST00000597172 SBNO2Q9Y2G9 1366 aa13.14□□□□□ -0.31
TRIM28-208ENST00000597172 ADCY9O60503 1353 aa13.13□□□□□ -0.31
TRIM28-208ENST00000597172 TMF1P82094 1093 aa13.13□□□□□ -0.31
TRIM28-208ENST00000597172 KLRG1Q96E93 195 aa13.13□□□□□ -0.31
TRIM28-208ENST00000597172 KNDC1Q76NI1 1749 aa13.13□□□□□ -0.31
TRIM28-208ENST00000597172 KIF7Q2M1P5 1343 aa13.13□□□□□ -0.31
TRIM28-208ENST00000597172 MINK1Q8N4C8 1332 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-208ENST00000597172 AATKQ6ZMQ8 1374 aa13.12□□□□□ -0.31
TRIM28-208ENST00000597172 DDB1Q16531 1140 aa13.12□□□□□ -0.31
TRIM28-208ENST00000597172 PARP4Q9UKK3 1724 aaKnown RBP13.12□□□□□ -0.31
TRIM28-208ENST00000597172 CRYBG1Q9Y4K1 1723 aa13.12□□□□□ -0.31
TRIM28-208ENST00000597172 ATP7BP35670 1465 aa13.11□□□□□ -0.31
TRIM28-208ENST00000597172 CCDC7Q96M83 1385 aa13.11□□□□□ -0.31
TRIM28-208ENST00000597172 SLC24A1O60721 1099 aa13.11□□□□□ -0.31
TRIM28-208ENST00000597172 SLC16A10Q8TF71 515 aa13.11□□□□□ -0.31
TRIM28-208ENST00000597172 QRICH2Q9H0J4 1663 aa13.1□□□□□ -0.31
TRIM28-208ENST00000597172 NGDNQ8NEJ9 315 aaKnown RBP13.1□□□□□ -0.31
TRIM28-208ENST00000597172 ANKARQ7Z5J8 1434 aa13.1□□□□□ -0.31
TRIM28-208ENST00000597172 TOMM70O94826 608 aa13.09□□□□□ -0.31
TRIM28-208ENST00000597172 MARCH10Q8NA82 808 aaPredicted RBP13.09□□□□□ -0.31
TRIM28-208ENST00000597172 CDK19Q9BWU1 502 aa13.09□□□□□ -0.31
TRIM28-208ENST00000597172 EVC2Q86UK5 1308 aa13.09□□□□□ -0.31
TRIM28-208ENST00000597172 WASLO00401 505 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-208ENST00000597172 PUS7Q96PZ0 661 aaKnown RBP13.08□□□□□ -0.32
TRIM28-208ENST00000597172 CABP2Q9NPB3 220 aa13.08□□□□□ -0.32
TRIM28-208ENST00000597172 TULP4Q9NRJ4 1543 aa13.08□□□□□ -0.32
TRIM28-208ENST00000597172 BCL9O00512 1426 aa13.07□□□□□ -0.32
TRIM28-208ENST00000597172 HTRA3P83110 453 aa13.07□□□□□ -0.32
TRIM28-208ENST00000597172 DDX10Q13206 875 aaKnown RBP13.07□□□□□ -0.32
TRIM28-208ENST00000597172 NUTM2GQ5VZR2 741 aa13.07□□□□□ -0.32
TRIM28-208ENST00000597172 POLR3GLQ9BT43 218 aa13.07□□□□□ -0.32
TRIM28-208ENST00000597172 ZNF827Q17R98 1081 aa13.06□□□□□ -0.32
TRIM28-208ENST00000597172 CDCA8Q53HL2 280 aa13.06□□□□□ -0.32
TRIM28-208ENST00000597172 SRPK2P78362 688 aaKnown RBP13.04□□□□□ -0.32
TRIM28-208ENST00000597172 CRB1P82279 1406 aa13.04□□□□□ -0.32
TRIM28-208ENST00000597172 WDR90Q96KV7 1748 aa13.03□□□□□ -0.32
TRIM28-208ENST00000597172 PRR36Q9H6K5 1346 aa13.03□□□□□ -0.32
TRIM28-208ENST00000597172 PHRF1Q9P1Y6 1649 aaKnown RBP13.02□□□□□ -0.32
TRIM28-208ENST00000597172 KAT6BQ8WYB5 2073 aa13.02□□□□□ -0.33
TRIM28-208ENST00000597172 NUDT16Q96DE0 195 aaKnown RBP13.02□□□□□ -0.33
TRIM28-208ENST00000597172 SLC12A5Q9H2X9 1139 aa13.02□□□□□ -0.33
TRIM28-208ENST00000597172 CPDO75976 1380 aa13.02□□□□□ -0.33
TRIM28-208ENST00000597172 LRRC37A3O60309 1634 aa13.02□□□□□ -0.33
TRIM28-208ENST00000597172 TOPAZ1Q8N9V7 1692 aa13.02□□□□□ -0.33
TRIM28-208ENST00000597172 AKT1S1Q96B36 256 aa13.01□□□□□ -0.33
TRIM28-208ENST00000597172 COL5A2P05997 1499 aaPredicted RBP13.01□□□□□ -0.33
TRIM28-208ENST00000597172 COL24A1Q17RW2 1714 aa13.01□□□□□ -0.33
TRIM28-208ENST00000597172 LMO7Q8WWI1 1683 aa13□□□□□ -0.33
TRIM28-208ENST00000597172 CDCA7Q9BWT1 371 aaPredicted RBP13□□□□□ -0.33
TRIM28-208ENST00000597172 PANK3Q9H999 370 aa13□□□□□ -0.33
TRIM28-208ENST00000597172 CABP1Q9NZU7 370 aa13□□□□□ -0.33
TRIM28-208ENST00000597172 PAPPAQ13219 1627 aa12.99□□□□□ -0.33
TRIM28-208ENST00000597172 PNPLA7Q6ZV29 1317 aa12.99□□□□□ -0.33
TRIM28-208ENST00000597172 HSPA1AP0DMV8 641 aaKnown RBP12.99□□□□□ -0.33
TRIM28-208ENST00000597172 HSPA1BP0DMV9 641 aaKnown RBP12.99□□□□□ -0.33
TRIM28-208ENST00000597172 TOM1L2Q6ZVM7 507 aa12.99□□□□□ -0.33
TRIM28-208ENST00000597172 TMC1Q8TDI8 760 aa12.99□□□□□ -0.33
TRIM28-208ENST00000597172 LRRC4BQ9NT99 713 aa12.99□□□□□ -0.33
TRIM28-208ENST00000597172 CCDC61Q9Y6R9 512 aa12.99□□□□□ -0.33
TRIM28-208ENST00000597172 PER1O15534 1290 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-208ENST00000597172 RBM46Q8TBY0 533 aaKnown RBP12.98□□□□□ -0.33
TRIM28-208ENST00000597172 PLEKHG3A1L390 1219 aa12.97□□□□□ -0.33
TRIM28-208ENST00000597172 EXOC5O00471 708 aa12.97□□□□□ -0.33
TRIM28-208ENST00000597172 DIEXFQ68CQ4 756 aaKnown RBP12.97□□□□□ -0.33
TRIM28-208ENST00000597172 CARD14Q9BXL6 1004 aa12.97□□□□□ -0.33
TRIM28-208ENST00000597172 TFCP2L1Q9NZI6 479 aa12.97□□□□□ -0.33
TRIM28-208ENST00000597172 CD2APQ9Y5K6 639 aa12.97□□□□□ -0.33
TRIM28-208ENST00000597172 AKAP12Q02952 1782 aa12.97□□□□□ -0.33
TRIM28-208ENST00000597172 ABTB2Q8N961 1025 aa12.96□□□□□ -0.33
TRIM28-208ENST00000597172 ACSBG1Q96GR2 724 aa12.96□□□□□ -0.33
TRIM28-208ENST00000597172 ZBTB7CA1YPR0 619 aa12.95□□□□□ -0.34
TRIM28-208ENST00000597172 GCP02774 474 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms