RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 GCC1Q96CN9 775 aa18.91■□□□□ 0.62
UPF1-204ENST00000596842 RBM25P49756 843 aaKnown RBP18.9■□□□□ 0.62
UPF1-204ENST00000596842 IL16Q14005 1332 aa18.9■□□□□ 0.62
UPF1-204ENST00000596842 KIDINS220Q9ULH0 1771 aa18.9■□□□□ 0.62
UPF1-204ENST00000596842 GLI2P10070 1586 aa18.9■□□□□ 0.62
UPF1-204ENST00000596842 VIRMAQ69YN4 1812 aaKnown RBP18.9■□□□□ 0.62
UPF1-204ENST00000596842 ZNF692Q9BU19 519 aaPredicted RBP18.89■□□□□ 0.62
UPF1-204ENST00000596842 PPIP5K1Q6PFW1 1433 aa18.89■□□□□ 0.61
UPF1-204ENST00000596842 CDC45O75419 566 aa18.89■□□□□ 0.61
UPF1-204ENST00000596842 RBM10P98175 930 aaKnown RBP18.89■□□□□ 0.61
UPF1-204ENST00000596842 MCM10Q7L590 875 aa18.89■□□□□ 0.61
UPF1-204ENST00000596842 ANP32BQ92688 251 aaKnown RBP18.89■□□□□ 0.61
UPF1-204ENST00000596842 SLC52A1Q9NWF4 448 aa18.89■□□□□ 0.61
UPF1-204ENST00000596842 NECTIN2Q92692 538 aa18.89■□□□□ 0.61
UPF1-204ENST00000596842 AEBP1Q8IUX7 1158 aa18.88■□□□□ 0.61
UPF1-204ENST00000596842 CHAMP1Q96JM3 812 aa18.88■□□□□ 0.61
UPF1-204ENST00000596842 COG3Q96JB2 828 aa18.88■□□□□ 0.61
UPF1-204ENST00000596842 CALD1Q05682 793 aaKnown RBP18.87■□□□□ 0.61
UPF1-204ENST00000596842 ESPNB1AK53 854 aa18.87■□□□□ 0.61
UPF1-204ENST00000596842 TSHZ3Q63HK5 1081 aa18.87■□□□□ 0.61
UPF1-204ENST00000596842 CHMP4BQ9H444 224 aaKnown RBP18.87■□□□□ 0.61
UPF1-204ENST00000596842 SULT6B1Q6IMI4 303 aa18.86■□□□□ 0.61
UPF1-204ENST00000596842 KIF2CQ99661 725 aa18.86■□□□□ 0.61
UPF1-204ENST00000596842 ABCA9Q8IUA7 1624 aa18.86■□□□□ 0.61
UPF1-204ENST00000596842 CAVIN1Q6NZI2 390 aaKnown RBP18.86■□□□□ 0.61
UPF1-204ENST00000596842 GSPT1P15170 499 aaKnown RBP18.85■□□□□ 0.61
UPF1-204ENST00000596842 RAB3GAP1Q15042 981 aa18.85■□□□□ 0.61
UPF1-204ENST00000596842 SETBP1Q9Y6X0 1596 aa18.85■□□□□ 0.61
UPF1-204ENST00000596842 SNX21Q969T3 373 aa18.85■□□□□ 0.61
UPF1-204ENST00000596842 API5Q9BZZ5 524 aaKnown RBP18.85■□□□□ 0.61
UPF1-204ENST00000596842 ARAP3Q8WWN8 1544 aa18.84■□□□□ 0.61
UPF1-204ENST00000596842 PKP1Q13835 747 aa18.84■□□□□ 0.61
UPF1-204ENST00000596842 YTHDC2Q9H6S0 1430 aaKnown RBP18.84■□□□□ 0.61
UPF1-204ENST00000596842 PDE4CQ08493 712 aa18.84■□□□□ 0.61
UPF1-204ENST00000596842 POGZQ7Z3K3 1410 aa18.84■□□□□ 0.61
UPF1-204ENST00000596842 PUS7Q96PZ0 661 aaKnown RBP18.84■□□□□ 0.61
UPF1-204ENST00000596842 ERBB4Q15303 1308 aa18.83■□□□□ 0.6
UPF1-204ENST00000596842 ZMYM3Q14202 1370 aa18.83■□□□□ 0.6
UPF1-204ENST00000596842 IFT57Q9NWB7 429 aa18.83■□□□□ 0.6
UPF1-204ENST00000596842 F6X3S4 739 aa18.82■□□□□ 0.6
UPF1-204ENST00000596842 NASPP49321 788 aaPredicted RBP18.82■□□□□ 0.6
UPF1-204ENST00000596842 PLEKHM2Q8IWE5 1019 aa18.82■□□□□ 0.6
UPF1-204ENST00000596842 CAMSAP1Q5T5Y3 1602 aa18.81■□□□□ 0.6
UPF1-204ENST00000596842 MYO3AQ8NEV4 1616 aa18.81■□□□□ 0.6
UPF1-204ENST00000596842 ABCC3O15438 1527 aa18.81■□□□□ 0.6
UPF1-204ENST00000596842 CFAP44Q96MT7 982 aa18.81■□□□□ 0.6
UPF1-204ENST00000596842 OSCARQ8IYS5 282 aa18.81■□□□□ 0.6
UPF1-204ENST00000596842 MEIS3Q99687 375 aa18.81■□□□□ 0.6
UPF1-204ENST00000596842 FAM13BQ9NYF5 915 aa18.81■□□□□ 0.6
UPF1-204ENST00000596842 PRPF40AO75400 957 aaKnown RBP18.8■□□□□ 0.6
UPF1-204ENST00000596842 BAG4O95429 457 aaKnown RBP18.8■□□□□ 0.6
UPF1-204ENST00000596842 CLCN1P35523 988 aa18.8■□□□□ 0.6
UPF1-204ENST00000596842 CASC1Q6TDU7 716 aa18.8■□□□□ 0.6
UPF1-204ENST00000596842 ZGPATQ8N5A5 531 aaKnown RBP18.8■□□□□ 0.6
UPF1-204ENST00000596842 PPLO60437 1756 aa18.8■□□□□ 0.6
UPF1-204ENST00000596842 IFT172Q9UG01 1749 aa18.8■□□□□ 0.6
UPF1-204ENST00000596842 SLC4A2P04920 1241 aa18.8■□□□□ 0.6
UPF1-204ENST00000596842 IL13P35225 146 aa18.8■□□□□ 0.6
UPF1-204ENST00000596842 SKOR2Q2VWA4 1001 aaPredicted RBP18.8■□□□□ 0.6
UPF1-204ENST00000596842 CIZ1Q9ULV3 898 aaPredicted RBP18.8■□□□□ 0.6
UPF1-204ENST00000596842 CYB5RLQ6IPT4 315 aa18.79■□□□□ 0.6
UPF1-204ENST00000596842 YEATS2Q9ULM3 1422 aa18.79■□□□□ 0.6
UPF1-204ENST00000596842 LMOD3Q0VAK6 560 aa18.79■□□□□ 0.6
UPF1-204ENST00000596842 NUDT16Q96DE0 195 aaKnown RBP18.79■□□□□ 0.6
UPF1-204ENST00000596842 ESF1Q9H501 851 aaKnown RBP18.79■□□□□ 0.6
UPF1-204ENST00000596842 RBM27Q9P2N5 1060 aaKnown RBP18.78■□□□□ 0.6
UPF1-204ENST00000596842 SDSP20132 328 aa18.78■□□□□ 0.6
UPF1-204ENST00000596842 EXOC6BQ9Y2D4 811 aa18.78■□□□□ 0.6
UPF1-204ENST00000596842 MAPK8IP2Q13387 824 aaPredicted RBP18.77■□□□□ 0.6
UPF1-204ENST00000596842 INTS3Q68E01 1043 aaKnown RBP18.77■□□□□ 0.6
UPF1-204ENST00000596842 AK9Q5TCS8 1911 aa18.77■□□□□ 0.6
UPF1-204ENST00000596842 TRIM6-TRIM34B2RNG4 842 aa18.77■□□□□ 0.6
UPF1-204ENST00000596842 NCBP3Q53F19 620 aaKnown RBP18.77■□□□□ 0.6
UPF1-204ENST00000596842 RILPL2Q969X0 211 aa18.77■□□□□ 0.6
UPF1-204ENST00000596842 LRRC7Q96NW7 1537 aa18.77■□□□□ 0.6
UPF1-204ENST00000596842 TTC22Q5TAA0 569 aa18.77■□□□□ 0.59
UPF1-204ENST00000596842 ZNF428Q96B54 188 aa18.76■□□□□ 0.59
UPF1-204ENST00000596842 RNF214Q8ND24 703 aa18.76■□□□□ 0.59
UPF1-204ENST00000596842 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.76■□□□□ 0.59
UPF1-204ENST00000596842 ARHGAP45Q92619 1136 aa18.76■□□□□ 0.59
UPF1-204ENST00000596842 FOXO3O43524 673 aa18.75■□□□□ 0.59
UPF1-204ENST00000596842 RABEP1Q15276 862 aa18.75■□□□□ 0.59
UPF1-204ENST00000596842 MPNDQ8N594 471 aa18.75■□□□□ 0.59
UPF1-204ENST00000596842 COL3A1P02461 1466 aaPredicted RBP18.75■□□□□ 0.59
UPF1-204ENST00000596842 ADGRB2O60241 1585 aa18.75■□□□□ 0.59
UPF1-204ENST00000596842 ZC3H13Q5T200 1668 aaKnown RBP18.75■□□□□ 0.59
UPF1-204ENST00000596842 LMTK2Q8IWU2 1503 aa18.75■□□□□ 0.59
UPF1-204ENST00000596842 ST18O60284 1047 aa18.75■□□□□ 0.59
UPF1-204ENST00000596842 MSNP26038 577 aaKnown RBP18.75■□□□□ 0.59
UPF1-204ENST00000596842 WASLO00401 505 aaPredicted RBP18.75■□□□□ 0.59
UPF1-204ENST00000596842 DDIT3P35638 169 aa18.75■□□□□ 0.59
UPF1-204ENST00000596842 FRMPD1Q5SYB0 1578 aa18.75■□□□□ 0.59
UPF1-204ENST00000596842 ABCC4O15439 1325 aa18.74■□□□□ 0.59
UPF1-204ENST00000596842 NEXMIFQ5QGS0 1516 aa18.74■□□□□ 0.59
UPF1-204ENST00000596842 RRP9O43818 475 aaKnown RBP18.74■□□□□ 0.59
UPF1-204ENST00000596842 NEK4P51957 841 aa18.74■□□□□ 0.59
UPF1-204ENST00000596842 HSP90AB2PQ58FF8 381 aa18.74■□□□□ 0.59
UPF1-204ENST00000596842 ARHGEF28Q8N1W1 1705 aaKnown RBP18.74■□□□□ 0.59
UPF1-204ENST00000596842 DCTPP1Q9H773 170 aa18.74■□□□□ 0.59
UPF1-204ENST00000596842 CD163L1Q9NR16 1453 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms