RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 KCTD15Q96SI1 283 aaPredicted RBP9.76□□□□□ -0.85
SMAD4-216ENST00000593223 TOR4AQ9NXH8 423 aa9.76□□□□□ -0.85
SMAD4-216ENST00000593223 MAP4K5Q9Y4K4 846 aa9.76□□□□□ -0.85
SMAD4-216ENST00000593223 J3QL48 77 aa9.75□□□□□ -0.85
SMAD4-216ENST00000593223 ADH1CP00326 375 aa9.75□□□□□ -0.85
SMAD4-216ENST00000593223 FSHRP23945 695 aa9.75□□□□□ -0.85
SMAD4-216ENST00000593223 RAB15P59190 212 aa9.75□□□□□ -0.85
SMAD4-216ENST00000593223 MPNDQ8N594 471 aa9.75□□□□□ -0.85
SMAD4-216ENST00000593223 HDGFL1Q5TGJ6 251 aa9.74□□□□□ -0.85
SMAD4-216ENST00000593223 TRAF7Q6Q0C0 670 aa9.74□□□□□ -0.85
SMAD4-216ENST00000593223 CALR3Q96L12 384 aaKnown RBP9.74□□□□□ -0.85
SMAD4-216ENST00000593223 FAM187AA6NFU0 413 aa9.73□□□□□ -0.85
SMAD4-216ENST00000593223 NR5A1Q13285 461 aa9.73□□□□□ -0.85
SMAD4-216ENST00000593223 NRG2O14511 850 aaPredicted RBP9.72□□□□□ -0.85
SMAD4-216ENST00000593223 GIGYF1O75420 1035 aaPredicted RBP9.72□□□□□ -0.85
SMAD4-216ENST00000593223 GRM5P41594 1212 aa9.72□□□□□ -0.85
SMAD4-216ENST00000593223 LAPTM4AQ15012 233 aa9.72□□□□□ -0.85
SMAD4-216ENST00000593223 SLFNL1Q499Z3 407 aa9.72□□□□□ -0.85
SMAD4-216ENST00000593223 GLMNQ92990 594 aa9.72□□□□□ -0.85
SMAD4-216ENST00000593223 ALG2Q9H553 416 aa9.72□□□□□ -0.85
SMAD4-216ENST00000593223 CEP126Q9P2H0 1117 aa9.72□□□□□ -0.85
SMAD4-216ENST00000593223 SMPD1P17405 629 aa9.71□□□□□ -0.86
SMAD4-216ENST00000593223 NNTQ13423 1086 aa9.71□□□□□ -0.86
SMAD4-216ENST00000593223 RNF20Q5VTR2 975 aa9.71□□□□□ -0.86
SMAD4-216ENST00000593223 PKDCCQ504Y2 493 aa9.7□□□□□ -0.86
SMAD4-216ENST00000593223 ARID3CA6NKF2 412 aa9.69□□□□□ -0.86
SMAD4-216ENST00000593223 INTS6LQ5JSJ4 861 aaKnown RBP9.69□□□□□ -0.86
SMAD4-216ENST00000593223 RNF135Q8IUD6 432 aa9.69□□□□□ -0.86
SMAD4-216ENST00000593223 SEPT12Q8IYM1 358 aa9.69□□□□□ -0.86
SMAD4-216ENST00000593223 CCDC116Q8IYX3 515 aa9.69□□□□□ -0.86
SMAD4-216ENST00000593223 ADAMTS19Q8TE59 1207 aa9.69□□□□□ -0.86
SMAD4-216ENST00000593223 DHX9Q08211 1270 aaKnown RBP9.68□□□□□ -0.86
SMAD4-216ENST00000593223 ESPNB1AK53 854 aa9.67□□□□□ -0.86
SMAD4-216ENST00000593223 SUPT5HO00267 1087 aaKnown RBP9.67□□□□□ -0.86
SMAD4-216ENST00000593223 NR3C2P08235 984 aa9.67□□□□□ -0.86
SMAD4-216ENST00000593223 HPS1Q92902 700 aa9.67□□□□□ -0.86
SMAD4-216ENST00000593223 DGAT1O75907 488 aa9.66□□□□□ -0.86
SMAD4-216ENST00000593223 EMILIN1Q9Y6C2 1016 aa9.66□□□□□ -0.86
SMAD4-216ENST00000593223 ERVH48-1M5A8F1 160 aa9.65□□□□□ -0.86
SMAD4-216ENST00000593223 WDR4P57081 412 aaKnown RBP9.65□□□□□ -0.86
SMAD4-216ENST00000593223 PPP1R26Q5T8A7 1209 aaPredicted RBP9.65□□□□□ -0.86
SMAD4-216ENST00000593223 CCDC125Q86Z20 511 aa9.65□□□□□ -0.86
SMAD4-216ENST00000593223 TRIM52Q96A61 297 aa9.65□□□□□ -0.86
SMAD4-216ENST00000593223 PGPEP1Q9NXJ5 209 aa9.65□□□□□ -0.86
SMAD4-216ENST00000593223 PCDHB11Q9Y5F2 797 aa9.65□□□□□ -0.86
SMAD4-216ENST00000593223 PIK3CDO00329 1044 aa9.64□□□□□ -0.87
SMAD4-216ENST00000593223 SKIP12755 728 aa9.64□□□□□ -0.87
SMAD4-216ENST00000593223 ESF1Q9H501 851 aaKnown RBP9.64□□□□□ -0.87
SMAD4-216ENST00000593223 TMPRSS4Q9NRS4 437 aa9.64□□□□□ -0.87
SMAD4-216ENST00000593223 ZIC2O95409 532 aaPredicted RBP9.63□□□□□ -0.87
SMAD4-216ENST00000593223 CCDC97Q96F63 343 aaPredicted RBP9.63□□□□□ -0.87
SMAD4-216ENST00000593223 DOLKQ9UPQ8 538 aa9.63□□□□□ -0.87
SMAD4-216ENST00000593223 PHTF2Q8N3S3 785 aa9.62□□□□□ -0.87
SMAD4-216ENST00000593223 CCDC85AQ96PX6 553 aaPredicted RBP9.62□□□□□ -0.87
SMAD4-216ENST00000593223 CAPN5O15484 640 aaPredicted RBP9.61□□□□□ -0.87
SMAD4-216ENST00000593223 MYT1Q01538 1121 aa9.61□□□□□ -0.87
SMAD4-216ENST00000593223 OXLD1Q5BKU9 147 aa9.61□□□□□ -0.87
SMAD4-216ENST00000593223 PLPP7Q8NBV4 271 aa9.61□□□□□ -0.87
SMAD4-216ENST00000593223 ZNF784Q8NCA9 323 aaPredicted RBP9.61□□□□□ -0.87
SMAD4-216ENST00000593223 ITPKCQ96DU7 683 aa9.61□□□□□ -0.87
SMAD4-216ENST00000593223 CYLDQ9NQC7 956 aa9.61□□□□□ -0.87
SMAD4-216ENST00000593223 TIMP2P16035 220 aa9.6□□□□□ -0.87
SMAD4-216ENST00000593223 MAP7D1Q3KQU3 841 aa9.6□□□□□ -0.87
SMAD4-216ENST00000593223 TSGA10IPQ3SY00 556 aa9.6□□□□□ -0.87
SMAD4-216ENST00000593223 TBC1D9Q6ZT07 1266 aa9.6□□□□□ -0.87
SMAD4-216ENST00000593223 NFATC2IPQ8NCF5 419 aa9.6□□□□□ -0.87
SMAD4-216ENST00000593223 UCN2Q96RP3 112 aa9.6□□□□□ -0.87
SMAD4-216ENST00000593223 ZFAND3Q9H8U3 227 aa9.6□□□□□ -0.87
SMAD4-216ENST00000593223 MYCP01106 439 aaPredicted RBP9.59□□□□□ -0.87
SMAD4-216ENST00000593223 AVPP01185 164 aa9.59□□□□□ -0.87
SMAD4-216ENST00000593223 CDCA7Q9BWT1 371 aaPredicted RBP9.59□□□□□ -0.87
SMAD4-216ENST00000593223 TFIP11Q9UBB9 837 aaKnown RBP9.59□□□□□ -0.87
SMAD4-216ENST00000593223 PALM3A6NDB9 673 aaPredicted RBP9.58□□□□□ -0.88
SMAD4-216ENST00000593223 USP17L5A8MUK1 530 aa9.58□□□□□ -0.88
SMAD4-216ENST00000593223 AXIN1O15169 862 aa9.58□□□□□ -0.88
SMAD4-216ENST00000593223 ATP9BO43861 1147 aa9.58□□□□□ -0.88
SMAD4-216ENST00000593223 CTC1Q2NKJ3 1217 aa9.58□□□□□ -0.88
SMAD4-216ENST00000593223 PPP1R12CQ9BZL4 782 aa9.58□□□□□ -0.88
SMAD4-216ENST00000593223 SERPINA10Q9UK55 444 aa9.58□□□□□ -0.88
SMAD4-216ENST00000593223 USP4Q13107 963 aa9.57□□□□□ -0.88
SMAD4-216ENST00000593223 EML3Q32P44 896 aa9.57□□□□□ -0.88
SMAD4-216ENST00000593223 CC2D2BQ6DHV5 1058 aa9.57□□□□□ -0.88
SMAD4-216ENST00000593223 DEPDC4Q8N2C3 294 aa9.57□□□□□ -0.88
SMAD4-216ENST00000593223 KLF16Q9BXK1 252 aaPredicted RBP9.57□□□□□ -0.88
SMAD4-216ENST00000593223 LMOD1P29536 600 aaPredicted RBP9.56□□□□□ -0.88
SMAD4-216ENST00000593223 CBLBQ13191 982 aa9.56□□□□□ -0.88
SMAD4-216ENST00000593223 ZNF787Q6DD87 383 aa9.56□□□□□ -0.88
SMAD4-216ENST00000593223 CCDC82Q8N4S0 544 aa9.56□□□□□ -0.88
SMAD4-216ENST00000593223 SIRT1Q96EB6 747 aa9.56□□□□□ -0.88
SMAD4-216ENST00000593223 C1orf115Q9H7X2 142 aa9.56□□□□□ -0.88
SMAD4-216ENST00000593223 CHIC2Q9UKJ5 165 aa9.56□□□□□ -0.88
SMAD4-216ENST00000593223 USP17L3A6NCW0 530 aa9.55□□□□□ -0.88
SMAD4-216ENST00000593223 USP17L4A6NCW7 530 aa9.55□□□□□ -0.88
SMAD4-216ENST00000593223 SCTRP47872 440 aa9.55□□□□□ -0.88
SMAD4-216ENST00000593223 NCOA4Q13772 614 aa9.55□□□□□ -0.88
SMAD4-216ENST00000593223 USP17L2Q6R6M4 530 aa9.55□□□□□ -0.88
SMAD4-216ENST00000593223 USP17L1Q7RTZ2 530 aa9.55□□□□□ -0.88
SMAD4-216ENST00000593223 ARID3AQ99856 593 aa9.55□□□□□ -0.88
SMAD4-216ENST00000593223 ST8SIA5O15466 376 aa9.54□□□□□ -0.88
SMAD4-216ENST00000593223 LZTS3O60299 673 aaPredicted RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms