RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 KLHL34Q8N239 644 aa18.55■□□□□ 0.56
SMARCA4-219ENST00000592604 ARHGEF40Q8TER5 1519 aa18.55■□□□□ 0.56
SMARCA4-219ENST00000592604 HSP90AB1P08238 724 aaKnown RBP18.55■□□□□ 0.56
SMARCA4-219ENST00000592604 PRKAR2BP31323 418 aa18.55■□□□□ 0.56
SMARCA4-219ENST00000592604 ANKRD45Q5TZF3 282 aa18.55■□□□□ 0.56
SMARCA4-219ENST00000592604 GBP4Q96PP9 640 aa18.55■□□□□ 0.56
SMARCA4-219ENST00000592604 REREQ9P2R6 1566 aa18.54■□□□□ 0.56
SMARCA4-219ENST00000592604 PTMSP20962 102 aa18.54■□□□□ 0.56
SMARCA4-219ENST00000592604 CALD1Q05682 793 aaKnown RBP18.54■□□□□ 0.56
SMARCA4-219ENST00000592604 SKOR2Q2VWA4 1001 aaPredicted RBP18.54■□□□□ 0.56
SMARCA4-219ENST00000592604 NEO1Q92859 1461 aa18.53■□□□□ 0.56
SMARCA4-219ENST00000592604 NFE2L2Q16236 605 aa18.53■□□□□ 0.56
SMARCA4-219ENST00000592604 CDK19Q9BWU1 502 aa18.53■□□□□ 0.56
SMARCA4-219ENST00000592604 POLKQ9UBT6 870 aa18.53■□□□□ 0.56
SMARCA4-219ENST00000592604 BCL11BQ9C0K0 894 aaPredicted RBP18.52■□□□□ 0.56
SMARCA4-219ENST00000592604 CABP1Q9NZU7 370 aa18.52■□□□□ 0.56
SMARCA4-219ENST00000592604 ABCC4O15439 1325 aa18.52■□□□□ 0.56
SMARCA4-219ENST00000592604 TBC1D9Q6ZT07 1266 aa18.52■□□□□ 0.55
SMARCA4-219ENST00000592604 ZNF853P0CG23 659 aa18.51■□□□□ 0.55
SMARCA4-219ENST00000592604 SIRT2Q8IXJ6 389 aa18.51■□□□□ 0.55
SMARCA4-219ENST00000592604 IFT57Q9NWB7 429 aa18.51■□□□□ 0.55
SMARCA4-219ENST00000592604 PREX1Q8TCU6 1659 aa18.51■□□□□ 0.55
SMARCA4-219ENST00000592604 GNAI1P63096 354 aa18.51■□□□□ 0.55
SMARCA4-219ENST00000592604 K7ELQ4 463 aaPredicted RBP18.5■□□□□ 0.55
SMARCA4-219ENST00000592604 PHACTR3Q96KR7 559 aa18.5■□□□□ 0.55
SMARCA4-219ENST00000592604 MAP2P11137 1827 aaKnown RBP18.5■□□□□ 0.55
SMARCA4-219ENST00000592604 RAPGEF3O95398 923 aa18.5■□□□□ 0.55
SMARCA4-219ENST00000592604 ALKQ9UM73 1620 aa18.5■□□□□ 0.55
SMARCA4-219ENST00000592604 CD2BP2O95400 341 aaKnown RBP18.5■□□□□ 0.55
SMARCA4-219ENST00000592604 CLEC17AQ6ZS10 378 aa18.5■□□□□ 0.55
SMARCA4-219ENST00000592604 TSPYL6Q8N831 410 aa18.49■□□□□ 0.55
SMARCA4-219ENST00000592604 ATP7BP35670 1465 aa18.49■□□□□ 0.55
SMARCA4-219ENST00000592604 C1orf115Q9H7X2 142 aa18.48■□□□□ 0.55
SMARCA4-219ENST00000592604 GAS2L3Q86XJ1 694 aa18.47■□□□□ 0.55
SMARCA4-219ENST00000592604 KIF24Q5T7B8 1368 aa18.47■□□□□ 0.55
SMARCA4-219ENST00000592604 CDC45O75419 566 aa18.46■□□□□ 0.55
SMARCA4-219ENST00000592604 MBIPQ9NS73 344 aa18.46■□□□□ 0.55
SMARCA4-219ENST00000592604 HSP90AA1P07900 732 aaKnown RBP18.46■□□□□ 0.55
SMARCA4-219ENST00000592604 THUMPD2Q9BTF0 503 aaKnown RBP18.46■□□□□ 0.55
SMARCA4-219ENST00000592604 RBM10P98175 930 aaKnown RBP18.46■□□□□ 0.55
SMARCA4-219ENST00000592604 ESPNB1AK53 854 aa18.45■□□□□ 0.54
SMARCA4-219ENST00000592604 IL13P35225 146 aa18.45■□□□□ 0.54
SMARCA4-219ENST00000592604 API5Q9BZZ5 524 aaKnown RBP18.45■□□□□ 0.54
SMARCA4-219ENST00000592604 YEATS2Q9ULM3 1422 aa18.45■□□□□ 0.54
SMARCA4-219ENST00000592604 RICTORQ6R327 1708 aa18.45■□□□□ 0.54
SMARCA4-219ENST00000592604 DLC1Q96QB1 1528 aa18.45■□□□□ 0.54
SMARCA4-219ENST00000592604 HMOX1P09601 288 aa18.45■□□□□ 0.54
SMARCA4-219ENST00000592604 FBLN1P23142 703 aa18.45■□□□□ 0.54
SMARCA4-219ENST00000592604 CFAP44Q96MT7 982 aa18.45■□□□□ 0.54
SMARCA4-219ENST00000592604 SENP3Q9H4L4 574 aaPredicted RBP18.45■□□□□ 0.54
SMARCA4-219ENST00000592604 TWISTNBQ3B726 338 aaPredicted RBP18.44■□□□□ 0.54
SMARCA4-219ENST00000592604 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.44■□□□□ 0.543e-7■■■■□ 26.2
SMARCA4-219ENST00000592604 RBM42Q9BTD8 480 aaKnown RBP18.44■□□□□ 0.54
SMARCA4-219ENST00000592604 GAS2L2Q8NHY3 880 aa18.44■□□□□ 0.54
SMARCA4-219ENST00000592604 DLG5Q8TDM6 1919 aa18.43■□□□□ 0.54
SMARCA4-219ENST00000592604 LMOD3Q0VAK6 560 aa18.43■□□□□ 0.54
SMARCA4-219ENST00000592604 PLEKHM2Q8IWE5 1019 aa18.43■□□□□ 0.54
SMARCA4-219ENST00000592604 DCTPP1Q9H773 170 aa18.43■□□□□ 0.54
SMARCA4-219ENST00000592604 CDK12Q9NYV4 1490 aaPredicted RBP18.43■□□□□ 0.54
SMARCA4-219ENST00000592604 GSPT1P15170 499 aaKnown RBP18.42■□□□□ 0.54
SMARCA4-219ENST00000592604 NAP1L5Q96NT1 182 aaPredicted RBP18.42■□□□□ 0.54
SMARCA4-219ENST00000592604 IBTKQ9P2D0 1353 aaPredicted RBP18.42■□□□□ 0.54
SMARCA4-219ENST00000592604 KNDC1Q76NI1 1749 aa18.41■□□□□ 0.54
SMARCA4-219ENST00000592604 ELL2O00472 640 aaPredicted RBP18.41■□□□□ 0.54
SMARCA4-219ENST00000592604 SSFA2P28290 1259 aa18.41■□□□□ 0.54
SMARCA4-219ENST00000592604 C8orf58Q8NAV2 365 aa18.41■□□□□ 0.54
SMARCA4-219ENST00000592604 AATKQ6ZMQ8 1374 aa18.41■□□□□ 0.54
SMARCA4-219ENST00000592604 ERBB4Q15303 1308 aa18.41■□□□□ 0.54
SMARCA4-219ENST00000592604 GOLGA6L22H0YM25 854 aa18.41■□□□□ 0.54
SMARCA4-219ENST00000592604 RABEP1Q15276 862 aa18.41■□□□□ 0.54
SMARCA4-219ENST00000592604 FOXD4L1Q9NU39 408 aa18.41■□□□□ 0.54
SMARCA4-219ENST00000592604 EMILIN1Q9Y6C2 1016 aa18.4■□□□□ 0.54
SMARCA4-219ENST00000592604 CPSF1Q10570 1443 aaKnown RBP18.4■□□□□ 0.54
SMARCA4-219ENST00000592604 EDC4Q6P2E9 1401 aaKnown RBP18.4■□□□□ 0.54
SMARCA4-219ENST00000592604 KLHL40Q2TBA0 621 aa18.39■□□□□ 0.54
SMARCA4-219ENST00000592604 TRIM44Q96DX7 344 aaPredicted RBP18.39■□□□□ 0.54
SMARCA4-219ENST00000592604 BAG4O95429 457 aaKnown RBP18.39■□□□□ 0.53
SMARCA4-219ENST00000592604 TTC22Q5TAA0 569 aa18.39■□□□□ 0.53
SMARCA4-219ENST00000592604 INTS3Q68E01 1043 aaKnown RBP18.38■□□□□ 0.53
SMARCA4-219ENST00000592604 RIMS2Q9UQ26 1411 aa18.38■□□□□ 0.53
SMARCA4-219ENST00000592604 PPP1R9BQ96SB3 815 aa18.37■□□□□ 0.53
SMARCA4-219ENST00000592604 USP26Q9BXU7 913 aa18.37■□□□□ 0.53
SMARCA4-219ENST00000592604 FBXO31Q5XUX0 539 aaPredicted RBP18.36■□□□□ 0.53
SMARCA4-219ENST00000592604 WAPLQ7Z5K2 1190 aa18.36■□□□□ 0.53
SMARCA4-219ENST00000592604 NUCB2P80303 420 aa18.36■□□□□ 0.53
SMARCA4-219ENST00000592604 CCDC173Q0VFZ6 552 aa18.36■□□□□ 0.53
SMARCA4-219ENST00000592604 ANKRD44Q8N8A2 993 aa18.36■□□□□ 0.53
SMARCA4-219ENST00000592604 SETD1AO15047 1707 aaKnown RBP18.35■□□□□ 0.53
SMARCA4-219ENST00000592604 CYP2E1P05181 493 aaPredicted RBP18.35■□□□□ 0.53
SMARCA4-219ENST00000592604 AK9Q5TCS8 1911 aa18.35■□□□□ 0.53
SMARCA4-219ENST00000592604 RPAP2Q8IXW5 612 aaPredicted RBP18.35■□□□□ 0.53
SMARCA4-219ENST00000592604 NME9Q86XW9 330 aa18.34■□□□□ 0.53
SMARCA4-219ENST00000592604 DDX49Q9Y6V7 483 aaKnown RBP18.34■□□□□ 0.53
SMARCA4-219ENST00000592604 ATP10DQ9P241 1426 aa18.34■□□□□ 0.53
SMARCA4-219ENST00000592604 RIMBP3CA6NJZ7 1639 aa18.34■□□□□ 0.53
SMARCA4-219ENST00000592604 RIMBP3BA6NNM3 1639 aa18.34■□□□□ 0.53
SMARCA4-219ENST00000592604 RIMBP3Q9UFD9 1639 aa18.34■□□□□ 0.53
SMARCA4-219ENST00000592604 FAM83GA6ND36 823 aa18.33■□□□□ 0.52
SMARCA4-219ENST00000592604 NASPP49321 788 aaPredicted RBP18.33■□□□□ 0.52
SMARCA4-219ENST00000592604 HAP1P54257 671 aaPredicted RBP18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms