RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 CDK11AQ9UQ88 783 aaPredicted RBP12.92□□□□□ -0.34
SMAD4-209ENST00000589941 TIAM1Q13009 1591 aa12.91□□□□□ -0.34
SMAD4-209ENST00000589941 MIA2Q96PC5 1412 aa12.91□□□□□ -0.34
SMAD4-209ENST00000589941 MDM2Q00987 491 aaPredicted RBP12.91□□□□□ -0.34
SMAD4-209ENST00000589941 LRCH3Q96II8 777 aa12.91□□□□□ -0.34
SMAD4-209ENST00000589941 ZNF777Q9ULD5 760 aaPredicted RBP12.91□□□□□ -0.34
SMAD4-209ENST00000589941 REPIN1Q9BWE0 567 aaKnown RBP12.9□□□□□ -0.34
SMAD4-209ENST00000589941 NCOA2Q15596 1464 aa12.89□□□□□ -0.35
SMAD4-209ENST00000589941 SCAF11Q99590 1463 aaKnown RBP12.89□□□□□ -0.35
SMAD4-209ENST00000589941 HDGFP51858 240 aaKnown RBP12.88□□□□□ -0.35
SMAD4-209ENST00000589941 AMHR2Q16671 573 aa12.88□□□□□ -0.35
SMAD4-209ENST00000589941 TMUB1Q9BVT8 246 aa12.88□□□□□ -0.35
SMAD4-209ENST00000589941 CCDC18Q5T9S5 1454 aa12.88□□□□□ -0.35
SMAD4-209ENST00000589941 NWD1Q149M9 1564 aa12.87□□□□□ -0.35
SMAD4-209ENST00000589941 LRRC9Q6ZRR7 1453 aa12.87□□□□□ -0.35
SMAD4-209ENST00000589941 RNF40O75150 1001 aa12.87□□□□□ -0.35
SMAD4-209ENST00000589941 THEMISQ8N1K5 641 aaPredicted RBP12.87□□□□□ -0.35
SMAD4-209ENST00000589941 PLSCR2Q9NRY7 297 aa12.87□□□□□ -0.35
SMAD4-209ENST00000589941 DAXXQ9UER7 740 aaPredicted RBP12.87□□□□□ -0.35
SMAD4-209ENST00000589941 KIAA1107Q9UPP5 1409 aa12.87□□□□□ -0.35
SMAD4-209ENST00000589941 PTPN5P54829 565 aa12.86□□□□□ -0.35
SMAD4-209ENST00000589941 HPS5Q9UPZ3 1129 aa12.86□□□□□ -0.35
SMAD4-209ENST00000589941 RGS12O14924 1447 aa12.86□□□□□ -0.35
SMAD4-209ENST00000589941 KDM5AP29375 1690 aaKnown RBP12.86□□□□□ -0.35
SMAD4-209ENST00000589941 ERVK-7P63135 1459 aa12.85□□□□□ -0.35
SMAD4-209ENST00000589941 CDK12Q9NYV4 1490 aaPredicted RBP12.85□□□□□ -0.35
SMAD4-209ENST00000589941 ARHGAP23Q9P227 1491 aa12.85□□□□□ -0.35
SMAD4-209ENST00000589941 TMEM94Q12767 1356 aa12.85□□□□□ -0.35
SMAD4-209ENST00000589941 MROH1Q8NDA8 1641 aa12.85□□□□□ -0.35
SMAD4-209ENST00000589941 JCADQ9P266 1359 aa12.85□□□□□ -0.35
SMAD4-209ENST00000589941 ABCC3O15438 1527 aa12.85□□□□□ -0.35
SMAD4-209ENST00000589941 SLIT1O75093 1534 aa12.85□□□□□ -0.35
SMAD4-209ENST00000589941 PDE4DQ08499 809 aa12.85□□□□□ -0.35
SMAD4-209ENST00000589941 EP400Q96L91 3159 aa12.85□□□□□ -0.35
SMAD4-209ENST00000589941 PLEKHH2Q8IVE3 1493 aa12.85□□□□□ -0.35
SMAD4-209ENST00000589941 PIK3C2BO00750 1634 aa12.84□□□□□ -0.35
SMAD4-209ENST00000589941 SLC10A3P09131 477 aa12.84□□□□□ -0.35
SMAD4-209ENST00000589941 WBP1LQ9NX94 342 aa12.84□□□□□ -0.35
SMAD4-209ENST00000589941 DIP2AQ14689 1571 aa12.83□□□□□ -0.36
SMAD4-209ENST00000589941 SLF2Q8IX21 1173 aa12.83□□□□□ -0.36
SMAD4-209ENST00000589941 PARP9Q8IXQ6 854 aa12.83□□□□□ -0.36
SMAD4-209ENST00000589941 GPCPD1Q9NPB8 672 aa12.83□□□□□ -0.36
SMAD4-209ENST00000589941 TSR3Q9UJK0 312 aaKnown RBP12.83□□□□□ -0.36
SMAD4-209ENST00000589941 MBD5Q9P267 1494 aa12.83□□□□□ -0.36
SMAD4-209ENST00000589941 CLCN1P35523 988 aa12.82□□□□□ -0.36
SMAD4-209ENST00000589941 TTLL12Q14166 644 aaPredicted RBP12.82□□□□□ -0.36
SMAD4-209ENST00000589941 DHX29Q7Z478 1369 aaKnown RBP12.81□□□□□ -0.36
SMAD4-209ENST00000589941 EEA1Q15075 1411 aa12.81□□□□□ -0.36
SMAD4-209ENST00000589941 CASKIN1Q8WXD9 1431 aa12.81□□□□□ -0.36
SMAD4-209ENST00000589941 DDX11L8A8MPP1 907 aa12.81□□□□□ -0.36
SMAD4-209ENST00000589941 PRDM15P57071 1507 aaPredicted RBP12.81□□□□□ -0.36
SMAD4-209ENST00000589941 AHDC1Q5TGY3 1603 aaPredicted RBP12.8□□□□□ -0.36
SMAD4-209ENST00000589941 LTKP29376 864 aa12.8□□□□□ -0.36
SMAD4-209ENST00000589941 PPP4CP60510 307 aa12.8□□□□□ -0.36
SMAD4-209ENST00000589941 GIGYF2Q6Y7W6 1299 aaKnown RBP12.79□□□□□ -0.36
SMAD4-209ENST00000589941 FAM217BQ9NTX9 383 aaPredicted RBP12.79□□□□□ -0.36
SMAD4-209ENST00000589941 KIF3BO15066 747 aa12.78□□□□□ -0.36
SMAD4-209ENST00000589941 ZNF644Q9H582 1327 aaPredicted RBP12.78□□□□□ -0.36
SMAD4-209ENST00000589941 NKTRP30414 1462 aaKnown RBP12.78□□□□□ -0.36
SMAD4-209ENST00000589941 CAMSAP2Q08AD1 1489 aa12.78□□□□□ -0.36
SMAD4-209ENST00000589941 MAST1Q9Y2H9 1570 aa12.77□□□□□ -0.36
SMAD4-209ENST00000589941 LRP5O75197 1615 aa12.77□□□□□ -0.36
SMAD4-209ENST00000589941 TET3O43151 1660 aa12.77□□□□□ -0.36
SMAD4-209ENST00000589941 CHD2O14647 1828 aaKnown RBP12.77□□□□□ -0.37
SMAD4-209ENST00000589941 HCSTQ9UBK5 93 aa12.77□□□□□ -0.37
SMAD4-209ENST00000589941 WASHC2CQ9Y4E1 1318 aa12.77□□□□□ -0.37
SMAD4-209ENST00000589941 RTEL1-TNFRSF6BF6WH68 1400 aa12.77□□□□□ -0.37
SMAD4-209ENST00000589941 FYCO1Q9BQS8 1478 aa12.77□□□□□ -0.37
SMAD4-209ENST00000589941 SLC4A3P48751 1232 aa12.76□□□□□ -0.37
SMAD4-209ENST00000589941 ZNF772Q68DY9 489 aaPredicted RBP12.76□□□□□ -0.37
SMAD4-209ENST00000589941 RDH13Q8NBN7 331 aa12.76□□□□□ -0.37
SMAD4-209ENST00000589941 GPBP1L1Q9HC44 474 aaPredicted RBP12.76□□□□□ -0.37
SMAD4-209ENST00000589941 CD46P15529 392 aa12.75□□□□□ -0.37
SMAD4-209ENST00000589941 RXRBP28702 533 aa12.75□□□□□ -0.37
SMAD4-209ENST00000589941 SSTR3P32745 418 aaPredicted RBP12.75□□□□□ -0.37
SMAD4-209ENST00000589941 APLP1P51693 650 aa12.75□□□□□ -0.37
SMAD4-209ENST00000589941 MEX3CQ5U5Q3 659 aaKnown RBP12.75□□□□□ -0.37
SMAD4-209ENST00000589941 FGD6Q6ZV73 1430 aa12.75□□□□□ -0.37
SMAD4-209ENST00000589941 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.75□□□□□ -0.37
SMAD4-209ENST00000589941 EIF2AK4Q9P2K8 1649 aaKnown RBP12.75□□□□□ -0.37
SMAD4-209ENST00000589941 MYO5BQ9ULV0 1848 aa12.74□□□□□ -0.37
SMAD4-209ENST00000589941 CFHP08603 1231 aa12.74□□□□□ -0.37
SMAD4-209ENST00000589941 MS4A1P11836 297 aa12.74□□□□□ -0.37
SMAD4-209ENST00000589941 SULF1Q8IWU6 871 aa12.74□□□□□ -0.37
SMAD4-209ENST00000589941 SPATA31A6Q5VVP1 1343 aa12.73□□□□□ -0.37
SMAD4-209ENST00000589941 CFDP1Q9UEE9 299 aaPredicted RBP12.73□□□□□ -0.37
SMAD4-209ENST00000589941 CCDC141Q6ZP82 1450 aa12.72□□□□□ -0.37
SMAD4-209ENST00000589941 CCNB3Q8WWL7 1395 aa12.72□□□□□ -0.37
SMAD4-209ENST00000589941 NHSL1Q5SYE7 1610 aa12.72□□□□□ -0.37
SMAD4-209ENST00000589941 AFF2P51816 1311 aa12.7□□□□□ -0.38
SMAD4-209ENST00000589941 GCGRP47871 477 aa12.7□□□□□ -0.38
SMAD4-209ENST00000589941 TXNDC2Q86VQ3 553 aa12.7□□□□□ -0.38
SMAD4-209ENST00000589941 MSH6P52701 1360 aa12.69□□□□□ -0.38
SMAD4-209ENST00000589941 BRPF1P55201 1214 aaPredicted RBP12.69□□□□□ -0.38
SMAD4-209ENST00000589941 RSPH4AQ5TD94 716 aa12.69□□□□□ -0.38
SMAD4-209ENST00000589941 NECTIN2Q92692 538 aa12.69□□□□□ -0.38
SMAD4-209ENST00000589941 KDM4CQ9H3R0 1056 aa12.69□□□□□ -0.38
SMAD4-209ENST00000589941 EFCAB6Q5THR3 1501 aa12.68□□□□□ -0.38
SMAD4-209ENST00000589941 NEUROD2Q15784 382 aa12.68□□□□□ -0.38
SMAD4-209ENST00000589941 NYAP1Q6ZVC0 841 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms