RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 TNS3Q68CZ2 1445 aa13.02□□□□□ -0.33
VPS25-202ENST00000589219 BCL9LQ86UU0 1499 aa13.02□□□□□ -0.33
VPS25-202ENST00000589219 MTHFSP49914 203 aa13.01□□□□□ -0.33
VPS25-202ENST00000589219 RBM19Q9Y4C8 960 aaKnown RBP13.01□□□□□ -0.33
VPS25-202ENST00000589219 ARHGEF10O15013 1369 aa13.01□□□□□ -0.33
VPS25-202ENST00000589219 EDC4Q6P2E9 1401 aaKnown RBP13.01□□□□□ -0.33
VPS25-202ENST00000589219 CCDC27Q2M243 656 aa13□□□□□ -0.33
VPS25-202ENST00000589219 LMOD2Q6P5Q4 547 aa13□□□□□ -0.33
VPS25-202ENST00000589219 UNC5CLQ8IV45 518 aa13□□□□□ -0.33
VPS25-202ENST00000589219 GJD4Q96KN9 370 aaPredicted RBP13□□□□□ -0.33
VPS25-202ENST00000589219 MON2Q7Z3U7 1717 aa12.99□□□□□ -0.33
VPS25-202ENST00000589219 EXOC6Q8TAG9 804 aa12.99□□□□□ -0.33
VPS25-202ENST00000589219 SLIT2O94813 1529 aa12.98□□□□□ -0.33
VPS25-202ENST00000589219 CPSF1Q10570 1443 aaKnown RBP12.98□□□□□ -0.33
VPS25-202ENST00000589219 PPIP5K1Q6PFW1 1433 aa12.98□□□□□ -0.33
VPS25-202ENST00000589219 WASLO00401 505 aaPredicted RBP12.98□□□□□ -0.33
VPS25-202ENST00000589219 TNNT2P45379 298 aaPredicted RBP12.98□□□□□ -0.33
VPS25-202ENST00000589219 PMFBP1Q8TBY8 1022 aa12.98□□□□□ -0.33
VPS25-202ENST00000589219 ITSN1Q15811 1721 aa12.98□□□□□ -0.33
VPS25-202ENST00000589219 TOPAZ1Q8N9V7 1692 aa12.98□□□□□ -0.33
VPS25-202ENST00000589219 AKAP12Q02952 1782 aa12.97□□□□□ -0.33
VPS25-202ENST00000589219 NWD2Q9ULI1 1742 aa12.97□□□□□ -0.33
VPS25-202ENST00000589219 CCDC125Q86Z20 511 aa12.97□□□□□ -0.33
VPS25-202ENST00000589219 ABCA3Q99758 1704 aa12.96□□□□□ -0.33
VPS25-202ENST00000589219 FANCIQ9NVI1 1328 aa12.96□□□□□ -0.33
VPS25-202ENST00000589219 FYB1O15117 783 aa12.96□□□□□ -0.33
VPS25-202ENST00000589219 NPM3O75607 178 aaKnown RBP12.96□□□□□ -0.33
VPS25-202ENST00000589219 WDR63Q8IWG1 891 aa12.96□□□□□ -0.33
VPS25-202ENST00000589219 WWC1Q8IX03 1113 aa12.96□□□□□ -0.33
VPS25-202ENST00000589219 GGNBP2Q9H3C7 697 aa12.96□□□□□ -0.33
VPS25-202ENST00000589219 EP400Q96L91 3159 aa12.95□□□□□ -0.34
VPS25-202ENST00000589219 CACNB1Q02641 598 aaPredicted RBP12.95□□□□□ -0.34
VPS25-202ENST00000589219 CABLES1Q8TDN4 633 aa12.95□□□□□ -0.34
VPS25-202ENST00000589219 PNNQ9H307 717 aaKnown RBP12.95□□□□□ -0.34
VPS25-202ENST00000589219 CABP1Q9NZU7 370 aa12.95□□□□□ -0.34
VPS25-202ENST00000589219 TRPM3Q9HCF6 1732 aaPredicted RBP12.95□□□□□ -0.34
VPS25-202ENST00000589219 PLCH1Q4KWH8 1693 aa12.95□□□□□ -0.34
VPS25-202ENST00000589219 NRKQ7Z2Y5 1582 aa12.94□□□□□ -0.34
VPS25-202ENST00000589219 PLEKHG5O94827 1062 aa12.94□□□□□ -0.34
VPS25-202ENST00000589219 VPS72Q15906 364 aa12.94□□□□□ -0.34
VPS25-202ENST00000589219 TCP11L2Q8N4U5 519 aa12.94□□□□□ -0.34
VPS25-202ENST00000589219 NGDNQ8NEJ9 315 aaKnown RBP12.94□□□□□ -0.34
VPS25-202ENST00000589219 CRBNQ96SW2 442 aa12.94□□□□□ -0.34
VPS25-202ENST00000589219 GLI3P10071 1580 aa12.94□□□□□ -0.34
VPS25-202ENST00000589219 AATKQ6ZMQ8 1374 aa12.94□□□□□ -0.34
VPS25-202ENST00000589219 ALS2Q96Q42 1657 aa12.93□□□□□ -0.34
VPS25-202ENST00000589219 U2AF1L5P0DN76 240 aaPredicted RBP12.93□□□□□ -0.34
VPS25-202ENST00000589219 U2AF1Q01081 240 aaKnown RBP eCLIP12.93□□□□□ -0.34
VPS25-202ENST00000589219 CCDC9Q9Y3X0 531 aaKnown RBP12.93□□□□□ -0.34
VPS25-202ENST00000589219 PRR36Q9H6K5 1346 aa12.92□□□□□ -0.34
VPS25-202ENST00000589219 MAPK8IP3Q9UPT6 1336 aa12.91□□□□□ -0.34
VPS25-202ENST00000589219 BRWD3Q6RI45 1802 aa12.91□□□□□ -0.34
VPS25-202ENST00000589219 PLIN1O60240 522 aa12.91□□□□□ -0.34
VPS25-202ENST00000589219 PAK3O75914 559 aaPredicted RBP12.91□□□□□ -0.34
VPS25-202ENST00000589219 NUDT16Q96DE0 195 aaKnown RBP12.91□□□□□ -0.34
VPS25-202ENST00000589219 MYH16Q9H6N6 1097 aa12.91□□□□□ -0.34
VPS25-202ENST00000589219 SPINK5Q9NQ38 1064 aaPredicted RBP12.91□□□□□ -0.34
VPS25-202ENST00000589219 CCDC61Q9Y6R9 512 aa12.91□□□□□ -0.34
VPS25-202ENST00000589219 COL14A1Q05707 1796 aaKnown RBP12.9□□□□□ -0.34
VPS25-202ENST00000589219 FAM83GA6ND36 823 aa12.9□□□□□ -0.34
VPS25-202ENST00000589219 TCERG1O14776 1098 aaKnown RBP12.9□□□□□ -0.34
VPS25-202ENST00000589219 DIAPH1O60610 1272 aaKnown RBP12.9□□□□□ -0.34
VPS25-202ENST00000589219 CT47B1P0C2W7 299 aaPredicted RBP12.9□□□□□ -0.34
VPS25-202ENST00000589219 SEPT12Q8IYM1 358 aa12.9□□□□□ -0.34
VPS25-202ENST00000589219 IL16Q14005 1332 aa12.89□□□□□ -0.35
VPS25-202ENST00000589219 ONECUT3O60422 494 aaPredicted RBP12.89□□□□□ -0.35
VPS25-202ENST00000589219 ZNF692Q9BU19 519 aaPredicted RBP12.89□□□□□ -0.35
VPS25-202ENST00000589219 ZRANB1Q9UGI0 708 aa12.89□□□□□ -0.35
VPS25-202ENST00000589219 U2SURPO15042 1029 aaKnown RBP12.88□□□□□ -0.35
VPS25-202ENST00000589219 MS4A1P11836 297 aa12.88□□□□□ -0.35
VPS25-202ENST00000589219 SF3B2Q13435 895 aaKnown RBP12.88□□□□□ -0.35
VPS25-202ENST00000589219 PDE3AQ14432 1141 aa12.88□□□□□ -0.35
VPS25-202ENST00000589219 PLEKHF1Q96S99 279 aa12.88□□□□□ -0.35
VPS25-202ENST00000589219 BTG4Q9NY30 223 aa12.88□□□□□ -0.35
VPS25-202ENST00000589219 NRAPQ86VF7 1730 aa12.88□□□□□ -0.35
VPS25-202ENST00000589219 AAMPQ13685 434 aa12.87□□□□□ -0.35
VPS25-202ENST00000589219 CENPQQ7L2Z9 268 aaPredicted RBP12.87□□□□□ -0.35
VPS25-202ENST00000589219 CRYBG1Q9Y4K1 1723 aa12.87□□□□□ -0.35
VPS25-202ENST00000589219 A0A0G2JS52 829 aa12.86□□□□□ -0.35
VPS25-202ENST00000589219 MYT1Q01538 1121 aa12.86□□□□□ -0.35
VPS25-202ENST00000589219 C20orf194Q5TEA3 1177 aa12.86□□□□□ -0.35
VPS25-202ENST00000589219 KRT27Q7Z3Y8 459 aa12.86□□□□□ -0.35
VPS25-202ENST00000589219 COG3Q96JB2 828 aa12.86□□□□□ -0.35
VPS25-202ENST00000589219 RRP7AQ9Y3A4 280 aaKnown RBP12.86□□□□□ -0.35
VPS25-202ENST00000589219 OVOS2A0A0J9YW53 1432 aa12.86□□□□□ -0.35
VPS25-202ENST00000589219 OVOS2Q6IE36 1432 aa12.86□□□□□ -0.35
VPS25-202ENST00000589219 KDM2BQ8NHM5 1336 aa12.86□□□□□ -0.35
VPS25-202ENST00000589219 PLEKHG3A1L390 1219 aa12.85□□□□□ -0.35
VPS25-202ENST00000589219 FCHSD2O94868 740 aa12.85□□□□□ -0.35
VPS25-202ENST00000589219 NEFMP07197 916 aa12.85□□□□□ -0.35
VPS25-202ENST00000589219 TMPOP42166 694 aaKnown RBP12.85□□□□□ -0.35
VPS25-202ENST00000589219 NEUROD2Q15784 382 aa12.85□□□□□ -0.35
VPS25-202ENST00000589219 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS25-202ENST00000589219 PRDM11Q9NQV5 511 aa12.85□□□□□ -0.35
VPS25-202ENST00000589219 POLKQ9UBT6 870 aa12.85□□□□□ -0.35
VPS25-202ENST00000589219 USP6P35125 1406 aa12.85□□□□□ -0.35
VPS25-202ENST00000589219 ACEP12821 1306 aa12.85□□□□□ -0.35
VPS25-202ENST00000589219 CANXP27824 592 aaKnown RBP12.84□□□□□ -0.35
VPS25-202ENST00000589219 FAM98CQ17RN3 349 aaKnown RBP12.84□□□□□ -0.35
VPS25-202ENST00000589219 RARSP54136 660 aaKnown RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms