RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 NFE2L2Q16236 605 aa15.2■□□□□ 0.02
SHMT1-208ENST00000582352 KIF2CQ99661 725 aa15.2■□□□□ 0.02
SHMT1-208ENST00000582352 CABP1Q9NZU7 370 aa15.2■□□□□ 0.02
SHMT1-208ENST00000582352 RAPGEF3O95398 923 aa15.2■□□□□ 0.02
SHMT1-208ENST00000582352 MRPL50Q8N5N7 158 aaKnown RBP15.2■□□□□ 0.02
SHMT1-208ENST00000582352 CDK19Q9BWU1 502 aa15.2■□□□□ 0.02
SHMT1-208ENST00000582352 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.19■□□□□ 0.02
SHMT1-208ENST00000582352 VAMP4O75379 141 aa15.19■□□□□ 0.02
SHMT1-208ENST00000582352 GNAI1P63096 354 aa15.19■□□□□ 0.02
SHMT1-208ENST00000582352 TRIM44Q96DX7 344 aaPredicted RBP15.19■□□□□ 0.02
SHMT1-208ENST00000582352 FOXD4L1Q9NU39 408 aa15.19■□□□□ 0.02
SHMT1-208ENST00000582352 PREX1Q8TCU6 1659 aa15.19■□□□□ 0.02
SHMT1-208ENST00000582352 HMOX1P09601 288 aa15.19■□□□□ 0.02
SHMT1-208ENST00000582352 THUMPD2Q9BTF0 503 aaKnown RBP15.19■□□□□ 0.02
SHMT1-208ENST00000582352 IFT57Q9NWB7 429 aa15.19■□□□□ 0.02
SHMT1-208ENST00000582352 ARHGEF40Q8TER5 1519 aa15.19■□□□□ 0.02
SHMT1-208ENST00000582352 NEO1Q92859 1461 aa15.18■□□□□ 0.02
SHMT1-208ENST00000582352 ABCC4O15439 1325 aa15.18■□□□□ 0.02
SHMT1-208ENST00000582352 CD2BP2O95400 341 aaKnown RBP15.18■□□□□ 0.02
SHMT1-208ENST00000582352 POLKQ9UBT6 870 aa15.18■□□□□ 0.02
SHMT1-208ENST00000582352 GOLGA6L22H0YM25 854 aa15.18■□□□□ 0.02
SHMT1-208ENST00000582352 CDC45O75419 566 aa15.18■□□□□ 0.02
SHMT1-208ENST00000582352 TSPYL6Q8N831 410 aa15.17■□□□□ 0.02
SHMT1-208ENST00000582352 PHACTR3Q96KR7 559 aa15.17■□□□□ 0.02
SHMT1-208ENST00000582352 ESPNB1AK53 854 aa15.17■□□□□ 0.02
SHMT1-208ENST00000582352 ATP7BP35670 1465 aa15.16■□□□□ 0.02
SHMT1-208ENST00000582352 ALKQ9UM73 1620 aa15.16■□□□□ 0.02
SHMT1-208ENST00000582352 ELL2O00472 640 aaPredicted RBP15.16■□□□□ 0.02
SHMT1-208ENST00000582352 SIRT2Q8IXJ6 389 aa15.16■□□□□ 0.02
SHMT1-208ENST00000582352 MBIPQ9NS73 344 aa15.16■□□□□ 0.02
SHMT1-208ENST00000582352 MAP2P11137 1827 aaKnown RBP15.16■□□□□ 0.02
SHMT1-208ENST00000582352 TWISTNBQ3B726 338 aaPredicted RBP15.15■□□□□ 0.02
SHMT1-208ENST00000582352 RBM42Q9BTD8 480 aaKnown RBP15.15■□□□□ 0.02
SHMT1-208ENST00000582352 CFAP44Q96MT7 982 aa15.15■□□□□ 0.02
SHMT1-208ENST00000582352 API5Q9BZZ5 524 aaKnown RBP15.15■□□□□ 0.02
SHMT1-208ENST00000582352 FBLN1P23142 703 aa15.14■□□□□ 0.01
SHMT1-208ENST00000582352 LMOD3Q0VAK6 560 aa15.14■□□□□ 0.01
SHMT1-208ENST00000582352 GAS2L3Q86XJ1 694 aa15.14■□□□□ 0.01
SHMT1-208ENST00000582352 GAS2L2Q8NHY3 880 aa15.14■□□□□ 0.01
SHMT1-208ENST00000582352 SSFA2P28290 1259 aa15.13■□□□□ 0.01
SHMT1-208ENST00000582352 CDK12Q9NYV4 1490 aaPredicted RBP15.13■□□□□ 0.01
SHMT1-208ENST00000582352 ZNF853P0CG23 659 aa15.13■□□□□ 0.01
SHMT1-208ENST00000582352 EMILIN1Q9Y6C2 1016 aa15.12■□□□□ 0.01
SHMT1-208ENST00000582352 ERBB4Q15303 1308 aa15.12■□□□□ 0.01
SHMT1-208ENST00000582352 RICTORQ6R327 1708 aa15.12■□□□□ 0.01
SHMT1-208ENST00000582352 GSPT1P15170 499 aaKnown RBP15.12■□□□□ 0.01
SHMT1-208ENST00000582352 RABEP1Q15276 862 aa15.12■□□□□ 0.01
SHMT1-208ENST00000582352 STAG3Q9UJ98 1225 aa15.12■□□□□ 0.01
SHMT1-208ENST00000582352 RIMS2Q9UQ26 1411 aa15.12■□□□□ 0.01
SHMT1-208ENST00000582352 DLG5Q8TDM6 1919 aa15.11■□□□□ 0.01
SHMT1-208ENST00000582352 DDX49Q9Y6V7 483 aaKnown RBP15.11■□□□□ 0.01
SHMT1-208ENST00000582352 KIF24Q5T7B8 1368 aa15.1■□□□□ 0.01
SHMT1-208ENST00000582352 IL13P35225 146 aa15.1■□□□□ 0.01
SHMT1-208ENST00000582352 CLEC17AQ6ZS10 378 aa15.1■□□□□ 0.01
SHMT1-208ENST00000582352 PLEKHM2Q8IWE5 1019 aa15.1■□□□□ 0.01
SHMT1-208ENST00000582352 C8orf58Q8NAV2 365 aa15.1■□□□□ 0.01
SHMT1-208ENST00000582352 ANP32BQ92688 251 aaKnown RBP15.1■□□□□ 0.01
SHMT1-208ENST00000582352 KNDC1Q76NI1 1749 aa15.1■□□□□ 0.01
SHMT1-208ENST00000582352 EDC4Q6P2E9 1401 aaKnown RBP15.1■□□□□ 0.01
SHMT1-208ENST00000582352 YEATS2Q9ULM3 1422 aa15.1■□□□□ 0.01
SHMT1-208ENST00000582352 KLHL40Q2TBA0 621 aa15.1■□□□□ 0.01
SHMT1-208ENST00000582352 DLC1Q96QB1 1528 aa15.1■□□□□ 0.01
SHMT1-208ENST00000582352 IBTKQ9P2D0 1353 aaPredicted RBP15.09■□□□□ 0.01
SHMT1-208ENST00000582352 BAG4O95429 457 aaKnown RBP15.09■□□□□ 0.01
SHMT1-208ENST00000582352 TTC22Q5TAA0 569 aa15.09■□□□□ 0.01
SHMT1-208ENST00000582352 NASPP49321 788 aaPredicted RBP15.09■□□□□ 0.01
SHMT1-208ENST00000582352 CCDC173Q0VFZ6 552 aa15.09■□□□□ 0.01
SHMT1-208ENST00000582352 INTS3Q68E01 1043 aaKnown RBP15.08■□□□□ 0
SHMT1-208ENST00000582352 DCTPP1Q9H773 170 aa15.08■□□□□ 0
SHMT1-208ENST00000582352 AK9Q5TCS8 1911 aa15.08■□□□□ 0
SHMT1-208ENST00000582352 CASC1Q6TDU7 716 aa15.07■□□□□ 0
SHMT1-208ENST00000582352 WAPLQ7Z5K2 1190 aa15.07■□□□□ 0
SHMT1-208ENST00000582352 NUCB2P80303 420 aa15.07■□□□□ 0
SHMT1-208ENST00000582352 NME9Q86XW9 330 aa15.07■□□□□ 0
SHMT1-208ENST00000582352 AATKQ6ZMQ8 1374 aa15.06■□□□□ 0
SHMT1-208ENST00000582352 FAM83GA6ND36 823 aa15.06■□□□□ 0
SHMT1-208ENST00000582352 FBXO31Q5XUX0 539 aaPredicted RBP15.06■□□□□ 0
SHMT1-208ENST00000582352 CPSF1Q10570 1443 aaKnown RBP15.05■□□□□ 0
SHMT1-208ENST00000582352 HAP1P54257 671 aaPredicted RBP15.05■□□□□ 0
SHMT1-208ENST00000582352 GLIPR1L2Q4G1C9 344 aa15.05■□□□□ 0
SHMT1-208ENST00000582352 MCTP1Q6DN14 999 aa15.05■□□□□ 0
SHMT1-208ENST00000582352 COG3Q96JB2 828 aa15.05■□□□□ 0
SHMT1-208ENST00000582352 RIMBP3CA6NJZ7 1639 aa15.05■□□□□ -0
SHMT1-208ENST00000582352 RIMBP3BA6NNM3 1639 aa15.05■□□□□ -0
SHMT1-208ENST00000582352 RIMBP3Q9UFD9 1639 aa15.05■□□□□ -0
SHMT1-208ENST00000582352 ATP10DQ9P241 1426 aa15.05■□□□□ -0
SHMT1-208ENST00000582352 ANKRD44Q8N8A2 993 aa15.05■□□□□ -0
SHMT1-208ENST00000582352 DCTN1Q14203 1278 aa15.04■□□□□ -0
SHMT1-208ENST00000582352 USP26Q9BXU7 913 aa15.04■□□□□ -0
SHMT1-208ENST00000582352 ST18O60284 1047 aa15.04■□□□□ -0
SHMT1-208ENST00000582352 PPP1R9BQ96SB3 815 aa15.04■□□□□ -0
SHMT1-208ENST00000582352 HSP90AA2PQ14568 343 aaPredicted RBP15.03■□□□□ -0
SHMT1-208ENST00000582352 RRS1Q15050 365 aaKnown RBP15.03■□□□□ -0
SHMT1-208ENST00000582352 RRP9O43818 475 aaKnown RBP15.03■□□□□ -0
SHMT1-208ENST00000582352 NCLP19338 710 aaKnown RBP15.03■□□□□ -0
SHMT1-208ENST00000582352 RPAP2Q8IXW5 612 aaPredicted RBP15.03■□□□□ -0
SHMT1-208ENST00000582352 C16orf71Q8IYS4 520 aaPredicted RBP15.03■□□□□ -0
SHMT1-208ENST00000582352 ZRANB1Q9UGI0 708 aa15.03■□□□□ -0
SHMT1-208ENST00000582352 CWC22Q9HCG8 908 aaKnown RBP15.02■□□□□ -0
SHMT1-208ENST00000582352 MSH6P52701 1360 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms