RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 CDK15Q96Q40 435 aa9.22□□□□□ -0.93
SMCHD1-204ENST00000581226 CDV3Q9UKY7 258 aaKnown RBP9.22□□□□□ -0.93
SMCHD1-204ENST00000581226 NBPF20Q3BBV1 942 aa9.21□□□□□ -0.94
SMCHD1-204ENST00000581226 HDGFL1Q5TGJ6 251 aa9.21□□□□□ -0.94
SMCHD1-204ENST00000581226 TOR4AQ9NXH8 423 aa9.21□□□□□ -0.94
SMCHD1-204ENST00000581226 MAP4K5Q9Y4K4 846 aa9.21□□□□□ -0.94
SMCHD1-204ENST00000581226 KCTD15Q96SI1 283 aaPredicted RBP9.2□□□□□ -0.94
SMCHD1-204ENST00000581226 ALG2Q9H553 416 aa9.2□□□□□ -0.94
SMCHD1-204ENST00000581226 WASF2Q9Y6W5 498 aa9.2□□□□□ -0.94
SMCHD1-204ENST00000581226 J3QL48 77 aa9.19□□□□□ -0.94
SMCHD1-204ENST00000581226 ADH1CP00326 375 aa9.19□□□□□ -0.94
SMCHD1-204ENST00000581226 ZNF787Q6DD87 383 aa9.19□□□□□ -0.94
SMCHD1-204ENST00000581226 GLMNQ92990 594 aa9.19□□□□□ -0.94
SMCHD1-204ENST00000581226 CEP126Q9P2H0 1117 aa9.19□□□□□ -0.94
SMCHD1-204ENST00000581226 GIGYF1O75420 1035 aaPredicted RBP9.18□□□□□ -0.94
SMCHD1-204ENST00000581226 GRM5P41594 1212 aa9.18□□□□□ -0.94
SMCHD1-204ENST00000581226 ADAMTS19Q8TE59 1207 aa9.18□□□□□ -0.94
SMCHD1-204ENST00000581226 CALR3Q96L12 384 aaKnown RBP9.18□□□□□ -0.94
SMCHD1-204ENST00000581226 ARID3CA6NKF2 412 aa9.17□□□□□ -0.94
SMCHD1-204ENST00000581226 FSHRP23945 695 aa9.17□□□□□ -0.94
SMCHD1-204ENST00000581226 RAB15P59190 212 aa9.17□□□□□ -0.94
SMCHD1-204ENST00000581226 NR5A1Q13285 461 aa9.17□□□□□ -0.94
SMCHD1-204ENST00000581226 SMPD1P17405 629 aa9.16□□□□□ -0.94
SMCHD1-204ENST00000581226 SUPT5HO00267 1087 aaKnown RBP9.15□□□□□ -0.94
SMCHD1-204ENST00000581226 NNTQ13423 1086 aa9.15□□□□□ -0.94
SMCHD1-204ENST00000581226 SLFNL1Q499Z3 407 aa9.15□□□□□ -0.94
SMCHD1-204ENST00000581226 RNF20Q5VTR2 975 aa9.15□□□□□ -0.94
SMCHD1-204ENST00000581226 ESPNB1AK53 854 aa9.14□□□□□ -0.95
SMCHD1-204ENST00000581226 INTS6LQ5JSJ4 861 aaKnown RBP9.14□□□□□ -0.95
SMCHD1-204ENST00000581226 FAM187AA6NFU0 413 aa9.13□□□□□ -0.95
SMCHD1-204ENST00000581226 NR3C2P08235 984 aa9.13□□□□□ -0.95
SMCHD1-204ENST00000581226 SEPT12Q8IYM1 358 aa9.13□□□□□ -0.95
SMCHD1-204ENST00000581226 DHX9Q08211 1270 aaKnown RBP9.12□□□□□ -0.95
SMCHD1-204ENST00000581226 RNF135Q8IUD6 432 aa9.12□□□□□ -0.95
SMCHD1-204ENST00000581226 CCDC116Q8IYX3 515 aa9.12□□□□□ -0.95
SMCHD1-204ENST00000581226 PHTF2Q8N3S3 785 aa9.12□□□□□ -0.95
SMCHD1-204ENST00000581226 HPS1Q92902 700 aa9.12□□□□□ -0.95
SMCHD1-204ENST00000581226 PKDCCQ504Y2 493 aa9.11□□□□□ -0.95
SMCHD1-204ENST00000581226 ERVH48-1M5A8F1 160 aa9.1□□□□□ -0.95
SMCHD1-204ENST00000581226 PIK3CDO00329 1044 aa9.1□□□□□ -0.95
SMCHD1-204ENST00000581226 PPP1R26Q5T8A7 1209 aaPredicted RBP9.1□□□□□ -0.95
SMCHD1-204ENST00000581226 CCDC125Q86Z20 511 aa9.1□□□□□ -0.95
SMCHD1-204ENST00000581226 ZNF775Q96BV0 537 aaPredicted RBP9.1□□□□□ -0.95
SMCHD1-204ENST00000581226 DGAT1O75907 488 aa9.09□□□□□ -0.95
SMCHD1-204ENST00000581226 SKIP12755 728 aa9.09□□□□□ -0.95
SMCHD1-204ENST00000581226 TSGA10IPQ3SY00 556 aa9.09□□□□□ -0.95
SMCHD1-204ENST00000581226 CCDC85AQ96PX6 553 aaPredicted RBP9.09□□□□□ -0.95
SMCHD1-204ENST00000581226 UCN2Q96RP3 112 aa9.09□□□□□ -0.95
SMCHD1-204ENST00000581226 TMPRSS4Q9NRS4 437 aa9.09□□□□□ -0.95
SMCHD1-204ENST00000581226 PGPEP1Q9NXJ5 209 aa9.09□□□□□ -0.95
SMCHD1-204ENST00000581226 PCDHB11Q9Y5F2 797 aa9.09□□□□□ -0.95
SMCHD1-204ENST00000581226 EMILIN1Q9Y6C2 1016 aa9.09□□□□□ -0.95
SMCHD1-204ENST00000581226 WDR4P57081 412 aaKnown RBP9.08□□□□□ -0.96
SMCHD1-204ENST00000581226 C1orf115Q9H7X2 142 aa9.08□□□□□ -0.96
SMCHD1-204ENST00000581226 TBC1D9Q6ZT07 1266 aa9.07□□□□□ -0.96
SMCHD1-204ENST00000581226 PLPP7Q8NBV4 271 aa9.07□□□□□ -0.96
SMCHD1-204ENST00000581226 NFATC2IPQ8NCF5 419 aa9.07□□□□□ -0.96
SMCHD1-204ENST00000581226 TRIM52Q96A61 297 aa9.07□□□□□ -0.96
SMCHD1-204ENST00000581226 CCDC97Q96F63 343 aaPredicted RBP9.07□□□□□ -0.96
SMCHD1-204ENST00000581226 TFIP11Q9UBB9 837 aaKnown RBP9.07□□□□□ -0.96
SMCHD1-204ENST00000581226 DOLKQ9UPQ8 538 aa9.07□□□□□ -0.96
SMCHD1-204ENST00000581226 ZIC2O95409 532 aaPredicted RBP9.06□□□□□ -0.96
SMCHD1-204ENST00000581226 MAP7D1Q3KQU3 841 aa9.06□□□□□ -0.96
SMCHD1-204ENST00000581226 ITPKCQ96DU7 683 aa9.06□□□□□ -0.96
SMCHD1-204ENST00000581226 CDCA7Q9BWT1 371 aaPredicted RBP9.06□□□□□ -0.96
SMCHD1-204ENST00000581226 KLF16Q9BXK1 252 aaPredicted RBP9.06□□□□□ -0.96
SMCHD1-204ENST00000581226 PPP1R12CQ9BZL4 782 aa9.06□□□□□ -0.96
SMCHD1-204ENST00000581226 SERPINA10Q9UK55 444 aa9.06□□□□□ -0.96
SMCHD1-204ENST00000581226 PALM3A6NDB9 673 aaPredicted RBP9.05□□□□□ -0.96
SMCHD1-204ENST00000581226 ATP9BO43861 1147 aa9.05□□□□□ -0.96
SMCHD1-204ENST00000581226 AVPP01185 164 aa9.05□□□□□ -0.96
SMCHD1-204ENST00000581226 MYT1Q01538 1121 aa9.05□□□□□ -0.96
SMCHD1-204ENST00000581226 ZNF784Q8NCA9 323 aaPredicted RBP9.05□□□□□ -0.96
SMCHD1-204ENST00000581226 ESF1Q9H501 851 aaKnown RBP9.05□□□□□ -0.96
SMCHD1-204ENST00000581226 ZFAND3Q9H8U3 227 aa9.05□□□□□ -0.96
SMCHD1-204ENST00000581226 CYLDQ9NQC7 956 aa9.05□□□□□ -0.96
SMCHD1-204ENST00000581226 CHIC2Q9UKJ5 165 aa9.05□□□□□ -0.96
SMCHD1-204ENST00000581226 CAPN5O15484 640 aaPredicted RBP9.04□□□□□ -0.96
SMCHD1-204ENST00000581226 TIMP2P16035 220 aa9.04□□□□□ -0.96
SMCHD1-204ENST00000581226 OXLD1Q5BKU9 147 aa9.04□□□□□ -0.96
SMCHD1-204ENST00000581226 USP17L5A8MUK1 530 aa9.03□□□□□ -0.96
SMCHD1-204ENST00000581226 USP4Q13107 963 aa9.03□□□□□ -0.96
SMCHD1-204ENST00000581226 DEPDC4Q8N2C3 294 aa9.03□□□□□ -0.96
SMCHD1-204ENST00000581226 CCDC82Q8N4S0 544 aa9.03□□□□□ -0.96
SMCHD1-204ENST00000581226 MYCP01106 439 aaPredicted RBP9.02□□□□□ -0.97
SMCHD1-204ENST00000581226 SCTRP47872 440 aa9.02□□□□□ -0.97
SMCHD1-204ENST00000581226 ERVK-9P63128 1117 aa9.02□□□□□ -0.97
SMCHD1-204ENST00000581226 CTC1Q2NKJ3 1217 aa9.02□□□□□ -0.97
SMCHD1-204ENST00000581226 CC2D2BQ6DHV5 1058 aa9.02□□□□□ -0.97
SMCHD1-204ENST00000581226 MAFBQ9Y5Q3 323 aaPredicted RBP9.02□□□□□ -0.97
SMCHD1-204ENST00000581226 USP17L3A6NCW0 530 aa9.01□□□□□ -0.97
SMCHD1-204ENST00000581226 USP17L4A6NCW7 530 aa9.01□□□□□ -0.97
SMCHD1-204ENST00000581226 LZTS3O60299 673 aaPredicted RBP9.01□□□□□ -0.97
SMCHD1-204ENST00000581226 LILRA1O75019 489 aa9.01□□□□□ -0.97
SMCHD1-204ENST00000581226 LMOD1P29536 600 aaPredicted RBP9.01□□□□□ -0.97
SMCHD1-204ENST00000581226 ADD1P35611 737 aaKnown RBP9.01□□□□□ -0.97
SMCHD1-204ENST00000581226 CBLBQ13191 982 aa9.01□□□□□ -0.97
SMCHD1-204ENST00000581226 NCOA4Q13772 614 aa9.01□□□□□ -0.97
SMCHD1-204ENST00000581226 EML3Q32P44 896 aa9.01□□□□□ -0.97
SMCHD1-204ENST00000581226 USP17L2Q6R6M4 530 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms