RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 SLC26A8Q96RN1 970 aa13.25□□□□□ -0.29
TOP3A-209ENST00000580095 CCDC61Q9Y6R9 512 aa13.25□□□□□ -0.29
TOP3A-209ENST00000580095 KIF16BQ96L93 1317 aa13.25□□□□□ -0.29
TOP3A-209ENST00000580095 HDAC1Q13547 482 aaPredicted RBP13.25□□□□□ -0.29
TOP3A-209ENST00000580095 BECN1Q14457 450 aa13.25□□□□□ -0.29
TOP3A-209ENST00000580095 NCBP3Q53F19 620 aaKnown RBP13.25□□□□□ -0.29
TOP3A-209ENST00000580095 ZMYM3Q14202 1370 aa13.25□□□□□ -0.29
TOP3A-209ENST00000580095 ARXQ96QS3 562 aa13.24□□□□□ -0.29
TOP3A-209ENST00000580095 FAM135BQ49AJ0 1406 aa13.24□□□□□ -0.29
TOP3A-209ENST00000580095 ANKRD45Q5TZF3 282 aa13.23□□□□□ -0.29
TOP3A-209ENST00000580095 MED14O60244 1454 aa13.23□□□□□ -0.29
TOP3A-209ENST00000580095 TWISTNBQ3B726 338 aaPredicted RBP13.23□□□□□ -0.29
TOP3A-209ENST00000580095 SMC5Q8IY18 1101 aa13.23□□□□□ -0.29
TOP3A-209ENST00000580095 C22orf23Q9BZE7 217 aa13.23□□□□□ -0.29
TOP3A-209ENST00000580095 PPP6R1Q9UPN7 881 aa13.23□□□□□ -0.29
TOP3A-209ENST00000580095 CPS1P31327 1500 aa13.23□□□□□ -0.29
TOP3A-209ENST00000580095 SULT6B1Q6IMI4 303 aa13.23□□□□□ -0.29
TOP3A-209ENST00000580095 MRPL50Q8N5N7 158 aaKnown RBP13.23□□□□□ -0.29
TOP3A-209ENST00000580095 MCM10Q7L590 875 aa13.22□□□□□ -0.29
TOP3A-209ENST00000580095 MIS18AQ9NYP9 233 aa13.22□□□□□ -0.29
TOP3A-209ENST00000580095 ZBTB7BO15156 539 aaPredicted RBP13.21□□□□□ -0.29
TOP3A-209ENST00000580095 ALDH1L2Q3SY69 923 aa13.21□□□□□ -0.29
TOP3A-209ENST00000580095 HSP90AB2PQ58FF8 381 aa13.21□□□□□ -0.29
TOP3A-209ENST00000580095 CPSF1Q10570 1443 aaKnown RBP13.21□□□□□ -0.29
TOP3A-209ENST00000580095 ROBO2Q9HCK4 1378 aa13.21□□□□□ -0.29
TOP3A-209ENST00000580095 LTKP29376 864 aa13.21□□□□□ -0.3
TOP3A-209ENST00000580095 GNAI1P63096 354 aa13.21□□□□□ -0.3
TOP3A-209ENST00000580095 TRHP20396 242 aaPredicted RBP13.2□□□□□ -0.3
TOP3A-209ENST00000580095 NUCB1Q02818 461 aa13.2□□□□□ -0.3
TOP3A-209ENST00000580095 CHD1LQ86WJ1 897 aa13.2□□□□□ -0.3
TOP3A-209ENST00000580095 SIRT2Q8IXJ6 389 aa13.2□□□□□ -0.3
TOP3A-209ENST00000580095 EDC4Q6P2E9 1401 aaKnown RBP13.2□□□□□ -0.3
TOP3A-209ENST00000580095 ATP7BP35670 1465 aa13.2□□□□□ -0.3
TOP3A-209ENST00000580095 APBB1O00213 710 aa13.19□□□□□ -0.3
TOP3A-209ENST00000580095 EIF4A2Q14240 407 aaKnown RBP13.19□□□□□ -0.3
TOP3A-209ENST00000580095 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.19□□□□□ -0.3
TOP3A-209ENST00000580095 ANTXR1Q9H6X2 564 aa13.19□□□□□ -0.3
TOP3A-209ENST00000580095 ACEP12821 1306 aa13.19□□□□□ -0.3
TOP3A-209ENST00000580095 IFT57Q9NWB7 429 aa13.19□□□□□ -0.3
TOP3A-209ENST00000580095 FOXO3O43524 673 aa13.18□□□□□ -0.3
TOP3A-209ENST00000580095 ZNF853P0CG23 659 aa13.18□□□□□ -0.3
TOP3A-209ENST00000580095 MAP2P11137 1827 aaKnown RBP13.18□□□□□ -0.3
TOP3A-209ENST00000580095 CFAP44Q96MT7 982 aa13.18□□□□□ -0.3
TOP3A-209ENST00000580095 NUTM2GQ5VZR2 741 aa13.17□□□□□ -0.3
TOP3A-209ENST00000580095 SPATA31D1Q6ZQQ2 1576 aa13.17□□□□□ -0.3
TOP3A-209ENST00000580095 ZMYND15Q9H091 742 aa13.17□□□□□ -0.3
TOP3A-209ENST00000580095 KIF20BQ96Q89 1820 aa13.17□□□□□ -0.3
TOP3A-209ENST00000580095 ANKRD26Q9UPS8 1709 aa13.16□□□□□ -0.3
TOP3A-209ENST00000580095 GZF1Q9H116 711 aaPredicted RBP13.16□□□□□ -0.3
TOP3A-209ENST00000580095 TTC21BQ7Z4L5 1316 aa13.16□□□□□ -0.3
TOP3A-209ENST00000580095 TNRQ92752 1358 aa13.16□□□□□ -0.3
TOP3A-209ENST00000580095 FOXD4L1Q9NU39 408 aa13.16□□□□□ -0.3
TOP3A-209ENST00000580095 CALD1Q05682 793 aaKnown RBP13.16□□□□□ -0.3
TOP3A-209ENST00000580095 C16orf71Q8IYS4 520 aaPredicted RBP13.15□□□□□ -0.3
TOP3A-209ENST00000580095 DLC1Q96QB1 1528 aa13.15□□□□□ -0.3
TOP3A-209ENST00000580095 NRXN3Q9Y4C0 1643 aa13.15□□□□□ -0.3
TOP3A-209ENST00000580095 TMEM2Q9UHN6 1383 aa13.14□□□□□ -0.31
TOP3A-209ENST00000580095 VIRMAQ69YN4 1812 aaKnown RBP13.14□□□□□ -0.31
TOP3A-209ENST00000580095 HDGFP51858 240 aaKnown RBP13.13□□□□□ -0.31
TOP3A-209ENST00000580095 RBM42Q9BTD8 480 aaKnown RBP13.13□□□□□ -0.31
TOP3A-209ENST00000580095 ZNF692Q9BU19 519 aaPredicted RBP13.13□□□□□ -0.31
TOP3A-209ENST00000580095 CDK12Q9NYV4 1490 aaPredicted RBP13.13□□□□□ -0.31
TOP3A-209ENST00000580095 OTUD7AQ8TE49 926 aaPredicted RBP13.13□□□□□ -0.31
TOP3A-209ENST00000580095 ABCC4O15439 1325 aa13.13□□□□□ -0.31
TOP3A-209ENST00000580095 SETD1AO15047 1707 aaKnown RBP13.13□□□□□ -0.31
TOP3A-209ENST00000580095 LMOD3Q0VAK6 560 aa13.12□□□□□ -0.31
TOP3A-209ENST00000580095 NECTIN2Q92692 538 aa13.12□□□□□ -0.31
TOP3A-209ENST00000580095 RBM33Q96EV2 1170 aaKnown RBP13.12□□□□□ -0.31
TOP3A-209ENST00000580095 AATKQ6ZMQ8 1374 aa13.12□□□□□ -0.31
TOP3A-209ENST00000580095 ZNF428Q96B54 188 aa13.12□□□□□ -0.31
TOP3A-209ENST00000580095 CDC42BPGQ6DT37 1551 aa13.11□□□□□ -0.31
TOP3A-209ENST00000580095 SMARCA5O60264 1052 aaPredicted RBP13.11□□□□□ -0.31
TOP3A-209ENST00000580095 CD2BP2O95400 341 aaKnown RBP13.11□□□□□ -0.31
TOP3A-209ENST00000580095 BRPF1P55201 1214 aaPredicted RBP13.11□□□□□ -0.31
TOP3A-209ENST00000580095 TBC1D9Q6ZT07 1266 aa13.11□□□□□ -0.31
TOP3A-209ENST00000580095 ARHGAP45Q92619 1136 aa13.11□□□□□ -0.31
TOP3A-209ENST00000580095 AMOTL2Q9Y2J4 779 aa13.11□□□□□ -0.31
TOP3A-209ENST00000580095 F6X3S4 739 aa13.11□□□□□ -0.31
TOP3A-209ENST00000580095 SLC4A10Q6U841 1118 aa13.11□□□□□ -0.31
TOP3A-209ENST00000580095 HSCBQ8IWL3 235 aa13.11□□□□□ -0.31
TOP3A-209ENST00000580095 NGDNQ8NEJ9 315 aaKnown RBP13.11□□□□□ -0.31
TOP3A-209ENST00000580095 LTV1Q96GA3 475 aaPredicted RBP13.1□□□□□ -0.31
TOP3A-209ENST00000580095 ADAMTS13Q76LX8 1427 aa13.1□□□□□ -0.31
TOP3A-209ENST00000580095 MAP3K19Q56UN5 1328 aa13.1□□□□□ -0.31
TOP3A-209ENST00000580095 SLC4A2P04920 1241 aa13.1□□□□□ -0.31
TOP3A-209ENST00000580095 API5Q9BZZ5 524 aaKnown RBP13.1□□□□□ -0.31
TOP3A-209ENST00000580095 PTCH1Q13635 1447 aa13.1□□□□□ -0.31
TOP3A-209ENST00000580095 BMP2KLQ5H9B9 411 aa13.09□□□□□ -0.31
TOP3A-209ENST00000580095 G2E3Q7L622 706 aa13.09□□□□□ -0.31
TOP3A-209ENST00000580095 GCC1Q96CN9 775 aa13.09□□□□□ -0.31
TOP3A-209ENST00000580095 MEIS3Q99687 375 aa13.09□□□□□ -0.31
TOP3A-209ENST00000580095 MTHFSDQ2M296 383 aaKnown RBP13.09□□□□□ -0.31
TOP3A-209ENST00000580095 GSPT1P15170 499 aaKnown RBP13.09□□□□□ -0.31
TOP3A-209ENST00000580095 CHL1O00533 1208 aa13.08□□□□□ -0.32
TOP3A-209ENST00000580095 PTPRUQ92729 1446 aa13.08□□□□□ -0.32
TOP3A-209ENST00000580095 C14orf37Q86TY3 774 aa13.08□□□□□ -0.32
TOP3A-209ENST00000580095 KIF2CQ99661 725 aa13.08□□□□□ -0.32
TOP3A-209ENST00000580095 AMPHP49418 695 aa13.07□□□□□ -0.32
TOP3A-209ENST00000580095 MCM4P33991 863 aa13.07□□□□□ -0.32
TOP3A-209ENST00000580095 PIK3R4Q99570 1358 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms