RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.69■□□□□ 0.425e-9■■■■■ 28.9
SMG6-215ENST00000574501 SBNO2Q9Y2G9 1366 aa17.69■□□□□ 0.42
SMG6-215ENST00000574501 USP26Q9BXU7 913 aa17.69■□□□□ 0.42
SMG6-215ENST00000574501 ADGRL1O94910 1474 aa17.68■□□□□ 0.42
SMG6-215ENST00000574501 FAM177BA6PVY3 158 aa17.68■□□□□ 0.42
SMG6-215ENST00000574501 KIAA2012Q0VF49 1180 aa17.68■□□□□ 0.42
SMG6-215ENST00000574501 AFAP1Q8N556 730 aa17.68■□□□□ 0.42
SMG6-215ENST00000574501 CBX1P83916 185 aa17.68■□□□□ 0.42
SMG6-215ENST00000574501 ALDH1L2Q3SY69 923 aa17.68■□□□□ 0.42
SMG6-215ENST00000574501 ZNF830Q96NB3 372 aaPredicted RBP17.68■□□□□ 0.42
SMG6-215ENST00000574501 CWC22Q9HCG8 908 aaKnown RBP17.68■□□□□ 0.42
SMG6-215ENST00000574501 CHGAP10645 457 aaKnown RBP17.67■□□□□ 0.42
SMG6-215ENST00000574501 C16orf71Q8IYS4 520 aaPredicted RBP17.67■□□□□ 0.42
SMG6-215ENST00000574501 MYRIPQ8NFW9 859 aa17.67■□□□□ 0.42
SMG6-215ENST00000574501 SPAG9O60271 1321 aaKnown RBP17.67■□□□□ 0.42
SMG6-215ENST00000574501 PLEKHM2Q8IWE5 1019 aa17.67■□□□□ 0.42
SMG6-215ENST00000574501 IL16Q14005 1332 aa17.66■□□□□ 0.42
SMG6-215ENST00000574501 ZNF710Q8N1W2 664 aa17.66■□□□□ 0.42
SMG6-215ENST00000574501 ELL2O00472 640 aaPredicted RBP17.65■□□□□ 0.42
SMG6-215ENST00000574501 MYOM2P54296 1465 aa17.65■□□□□ 0.42
SMG6-215ENST00000574501 ST18O60284 1047 aa17.64■□□□□ 0.42
SMG6-215ENST00000574501 UTP14CQ5TAP6 766 aaKnown RBP17.64■□□□□ 0.42
SMG6-215ENST00000574501 EFCAB2Q5VUJ9 269 aa17.64■□□□□ 0.42
SMG6-215ENST00000574501 GGNBP2Q9H3C7 697 aa17.64■□□□□ 0.42
SMG6-215ENST00000574501 C17orf53Q8N3J3 647 aaPredicted RBP17.64■□□□□ 0.41
SMG6-215ENST00000574501 MED14O60244 1454 aa17.64■□□□□ 0.41
SMG6-215ENST00000574501 MYO3AQ8NEV4 1616 aa17.64■□□□□ 0.41
SMG6-215ENST00000574501 ATAD2Q6PL18 1390 aa17.63■□□□□ 0.41
SMG6-215ENST00000574501 KIF3BO15066 747 aa17.63■□□□□ 0.41
SMG6-215ENST00000574501 TTC22Q5TAA0 569 aa17.63■□□□□ 0.41
SMG6-215ENST00000574501 FOXD4L6Q3SYB3 417 aaPredicted RBP17.62■□□□□ 0.41
SMG6-215ENST00000574501 FOXD4L3Q6VB84 417 aaPredicted RBP17.62■□□□□ 0.41
SMG6-215ENST00000574501 OTUD7AQ8TE49 926 aaPredicted RBP17.62■□□□□ 0.41
SMG6-215ENST00000574501 TSPY26PQ9H489 355 aa17.62■□□□□ 0.41
SMG6-215ENST00000574501 ZCCHC11Q5TAX3 1644 aaKnown RBP17.62■□□□□ 0.41
SMG6-215ENST00000574501 MRPL50Q8N5N7 158 aaKnown RBP17.62■□□□□ 0.41
SMG6-215ENST00000574501 TSPYL6Q8N831 410 aa17.62■□□□□ 0.41
SMG6-215ENST00000574501 CABP2Q9NPB3 220 aa17.62■□□□□ 0.41
SMG6-215ENST00000574501 INTS3Q68E01 1043 aaKnown RBP17.61■□□□□ 0.41
SMG6-215ENST00000574501 PPP4R3BQ5MIZ7 849 aa17.61■□□□□ 0.41
SMG6-215ENST00000574501 THUMPD2Q9BTF0 503 aaKnown RBP17.61■□□□□ 0.41
SMG6-215ENST00000574501 ATP2B3Q16720 1220 aa17.6■□□□□ 0.41
SMG6-215ENST00000574501 PPRC1Q5VV67 1664 aaKnown RBP17.6■□□□□ 0.41
SMG6-215ENST00000574501 QRICH2Q9H0J4 1663 aa17.6■□□□□ 0.41
SMG6-215ENST00000574501 APBB1O00213 710 aa17.6■□□□□ 0.41
SMG6-215ENST00000574501 MBD3O95983 291 aa17.6■□□□□ 0.41
SMG6-215ENST00000574501 SAFB2Q14151 953 aaKnown RBP eCLIP17.6■□□□□ 0.41
SMG6-215ENST00000574501 NOLC1Q14978 699 aaKnown RBP eCLIP17.6■□□□□ 0.41
SMG6-215ENST00000574501 CHMP4BQ9H444 224 aaKnown RBP17.6■□□□□ 0.41
SMG6-215ENST00000574501 TET3O43151 1660 aa17.59■□□□□ 0.41
SMG6-215ENST00000574501 VAMP4O75379 141 aa17.59■□□□□ 0.41
SMG6-215ENST00000574501 TTC12Q9H892 705 aaPredicted RBP17.59■□□□□ 0.41
SMG6-215ENST00000574501 ANKRD36BQ8N2N9 1353 aa17.59■□□□□ 0.41
SMG6-215ENST00000574501 USP32Q8NFA0 1604 aa17.59■□□□□ 0.41
SMG6-215ENST00000574501 SDSP20132 328 aa17.59■□□□□ 0.41
SMG6-215ENST00000574501 PLCH2O75038 1416 aa17.58■□□□□ 0.4
SMG6-215ENST00000574501 SPDYE4A6NLX3 237 aa17.58■□□□□ 0.4
SMG6-215ENST00000574501 TPRNQ4KMQ1 711 aa17.58■□□□□ 0.4
SMG6-215ENST00000574501 PIBF1Q8WXW3 757 aa17.58■□□□□ 0.4
SMG6-215ENST00000574501 PRIMPOLQ96LW4 560 aa17.58■□□□□ 0.4
SMG6-215ENST00000574501 GDPD2Q9HCC8 539 aa17.58■□□□□ 0.4
SMG6-215ENST00000574501 BRPF1P55201 1214 aaPredicted RBP17.57■□□□□ 0.4
SMG6-215ENST00000574501 USP25Q9UHP3 1055 aa17.57■□□□□ 0.4
SMG6-215ENST00000574501 NSD2O96028 1365 aa17.57■□□□□ 0.4
SMG6-215ENST00000574501 SMARCA5O60264 1052 aaPredicted RBP17.57■□□□□ 0.4
SMG6-215ENST00000574501 NOL8Q76FK4 1167 aaKnown RBP17.57■□□□□ 0.4
SMG6-215ENST00000574501 ASXL2Q76L83 1435 aa17.56■□□□□ 0.4
SMG6-215ENST00000574501 EVC2Q86UK5 1308 aa17.56■□□□□ 0.4
SMG6-215ENST00000574501 DIAPH1O60610 1272 aaKnown RBP17.56■□□□□ 0.4
SMG6-215ENST00000574501 GADD45BO75293 160 aaPredicted RBP17.56■□□□□ 0.4
SMG6-215ENST00000574501 HMGN5P82970 282 aaKnown RBP17.56■□□□□ 0.4
SMG6-215ENST00000574501 ARHGAP45Q92619 1136 aa17.56■□□□□ 0.4
SMG6-215ENST00000574501 DCTPP1Q9H773 170 aa17.56■□□□□ 0.4
SMG6-215ENST00000574501 C14orf93Q9H972 538 aaKnown RBP17.56■□□□□ 0.4
SMG6-215ENST00000574501 MROH2AA6NES4 1674 aa17.55■□□□□ 0.4
SMG6-215ENST00000574501 ABCC1P33527 1531 aa17.55■□□□□ 0.4
SMG6-215ENST00000574501 ABCC4O15439 1325 aa17.55■□□□□ 0.4
SMG6-215ENST00000574501 KIF1BO60333 1816 aa17.55■□□□□ 0.4
SMG6-215ENST00000574501 NEK4P51957 841 aa17.55■□□□□ 0.4
SMG6-215ENST00000574501 TMX3Q96JJ7 454 aa17.55■□□□□ 0.4
SMG6-215ENST00000574501 CFAP44Q96MT7 982 aa17.55■□□□□ 0.4
SMG6-215ENST00000574501 KIF3AQ9Y496 699 aa17.55■□□□□ 0.4
SMG6-215ENST00000574501 COL3A1P02461 1466 aaPredicted RBP17.55■□□□□ 0.4
SMG6-215ENST00000574501 NRXN1Q9ULB1 1477 aa17.55■□□□□ 0.4
SMG6-215ENST00000574501 PIK3R4Q99570 1358 aa17.55■□□□□ 0.4
SMG6-215ENST00000574501 ZC3H13Q5T200 1668 aaKnown RBP17.55■□□□□ 0.4
SMG6-215ENST00000574501 GTF2F1P35269 517 aaKnown RBP eCLIP17.55■□□□□ 0.4
SMG6-215ENST00000574501 NUTM2DQ5VT03 806 aaPredicted RBP17.55■□□□□ 0.4
SMG6-215ENST00000574501 CASC1Q6TDU7 716 aa17.55■□□□□ 0.4
SMG6-215ENST00000574501 SENP3Q9H4L4 574 aaPredicted RBP17.55■□□□□ 0.4
SMG6-215ENST00000574501 PTCH1Q13635 1447 aa17.54■□□□□ 0.4
SMG6-215ENST00000574501 GTPBP4Q9BZE4 634 aaKnown RBP17.54■□□□□ 0.4
SMG6-215ENST00000574501 BCL2L12Q9HB09 334 aa17.54■□□□□ 0.4
SMG6-215ENST00000574501 INO80Q9ULG1 1556 aaPredicted RBP17.54■□□□□ 0.4
SMG6-215ENST00000574501 IGSF3O75054 1194 aa17.53■□□□□ 0.4
SMG6-215ENST00000574501 BRD1O95696 1058 aa17.53■□□□□ 0.4
SMG6-215ENST00000574501 PRKAR2BP31323 418 aa17.53■□□□□ 0.4
SMG6-215ENST00000574501 FGD1P98174 961 aa17.53■□□□□ 0.4
SMG6-215ENST00000574501 ZNF428Q96B54 188 aa17.53■□□□□ 0.4
SMG6-215ENST00000574501 IFT172Q9UG01 1749 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms