RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 DDIT3P35638 169 aa13.37□□□□□ -0.27
CCDC40-207ENST00000572253 TBC1D9Q6ZT07 1266 aa13.37□□□□□ -0.27
CCDC40-207ENST00000572253 ANP32BQ92688 251 aaKnown RBP13.37□□□□□ -0.27
CCDC40-207ENST00000572253 HMOX1P09601 288 aa13.36□□□□□ -0.27
CCDC40-207ENST00000572253 FAM135BQ49AJ0 1406 aa13.36□□□□□ -0.27
CCDC40-207ENST00000572253 POLKQ9UBT6 870 aa13.36□□□□□ -0.27
CCDC40-207ENST00000572253 NEO1Q92859 1461 aa13.36□□□□□ -0.27
CCDC40-207ENST00000572253 PTCH1Q13635 1447 aa13.35□□□□□ -0.27
CCDC40-207ENST00000572253 SIGLEC1Q9BZZ2 1709 aa13.35□□□□□ -0.27
CCDC40-207ENST00000572253 TWISTNBQ3B726 338 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-207ENST00000572253 LRRC7Q96NW7 1537 aa13.35□□□□□ -0.27
CCDC40-207ENST00000572253 PIK3R4Q99570 1358 aa13.35□□□□□ -0.27
CCDC40-207ENST00000572253 ELL2O00472 640 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-207ENST00000572253 HAP1P54257 671 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-207ENST00000572253 FOXD4L1Q9NU39 408 aa13.35□□□□□ -0.27
CCDC40-207ENST00000572253 CD163L1Q9NR16 1453 aa13.34□□□□□ -0.27
CCDC40-207ENST00000572253 THUMPD2Q9BTF0 503 aaKnown RBP13.34□□□□□ -0.27
CCDC40-207ENST00000572253 ABCC4O15439 1325 aa13.33□□□□□ -0.27
CCDC40-207ENST00000572253 CDC42BPGQ6DT37 1551 aa13.33□□□□□ -0.27
CCDC40-207ENST00000572253 CASC1Q6TDU7 716 aa13.33□□□□□ -0.28
CCDC40-207ENST00000572253 RABEP1Q15276 862 aa13.33□□□□□ -0.28
CCDC40-207ENST00000572253 MBIPQ9NS73 344 aa13.33□□□□□ -0.28
CCDC40-207ENST00000572253 ESPNB1AK53 854 aa13.32□□□□□ -0.28
CCDC40-207ENST00000572253 TSPYL6Q8N831 410 aa13.32□□□□□ -0.28
CCDC40-207ENST00000572253 CLTCQ00610 1675 aaKnown RBP13.32□□□□□ -0.28
CCDC40-207ENST00000572253 PHACTR3Q96KR7 559 aa13.32□□□□□ -0.28
CCDC40-207ENST00000572253 REREQ9P2R6 1566 aa13.32□□□□□ -0.28
CCDC40-207ENST00000572253 UBE2Q2Q8WVN8 375 aa13.31□□□□□ -0.28
CCDC40-207ENST00000572253 ATP7BP35670 1465 aa13.31□□□□□ -0.28
CCDC40-207ENST00000572253 KIF2CQ99661 725 aa13.31□□□□□ -0.28
CCDC40-207ENST00000572253 DIP2CQ9Y2E4 1556 aa13.31□□□□□ -0.28
CCDC40-207ENST00000572253 KIF24Q5T7B8 1368 aa13.31□□□□□ -0.28
CCDC40-207ENST00000572253 ARHGEF40Q8TER5 1519 aa13.31□□□□□ -0.28
CCDC40-207ENST00000572253 KIF20BQ96Q89 1820 aa13.31□□□□□ -0.28
CCDC40-207ENST00000572253 NUCB2P80303 420 aa13.3□□□□□ -0.28
CCDC40-207ENST00000572253 DDX49Q9Y6V7 483 aaKnown RBP13.3□□□□□ -0.28
CCDC40-207ENST00000572253 ZNF853P0CG23 659 aa13.3□□□□□ -0.28
CCDC40-207ENST00000572253 INTS3Q68E01 1043 aaKnown RBP13.3□□□□□ -0.28
CCDC40-207ENST00000572253 COG3Q96JB2 828 aa13.3□□□□□ -0.28
CCDC40-207ENST00000572253 EMILIN1Q9Y6C2 1016 aa13.3□□□□□ -0.28
CCDC40-207ENST00000572253 SSFA2P28290 1259 aa13.29□□□□□ -0.28
CCDC40-207ENST00000572253 IL13P35225 146 aa13.29□□□□□ -0.28
CCDC40-207ENST00000572253 FBLN1P23142 703 aa13.29□□□□□ -0.28
CCDC40-207ENST00000572253 GLIPR1L2Q4G1C9 344 aa13.29□□□□□ -0.28
CCDC40-207ENST00000572253 SIRT2Q8IXJ6 389 aa13.29□□□□□ -0.28
CCDC40-207ENST00000572253 GAS2L2Q8NHY3 880 aa13.29□□□□□ -0.28
CCDC40-207ENST00000572253 RBM42Q9BTD8 480 aaKnown RBP13.29□□□□□ -0.28
CCDC40-207ENST00000572253 ALKQ9UM73 1620 aa13.28□□□□□ -0.28
CCDC40-207ENST00000572253 CCDC173Q0VFZ6 552 aa13.28□□□□□ -0.28
CCDC40-207ENST00000572253 DCTPP1Q9H773 170 aa13.28□□□□□ -0.28
CCDC40-207ENST00000572253 TMEM131LA2VDJ0 1609 aa13.28□□□□□ -0.28
CCDC40-207ENST00000572253 EDC4Q6P2E9 1401 aaKnown RBP13.28□□□□□ -0.28
CCDC40-207ENST00000572253 CD2BP2O95400 341 aaKnown RBP13.28□□□□□ -0.28
CCDC40-207ENST00000572253 TTC22Q5TAA0 569 aa13.28□□□□□ -0.28
CCDC40-207ENST00000572253 C8orf58Q8NAV2 365 aa13.28□□□□□ -0.28
CCDC40-207ENST00000572253 KLHL40Q2TBA0 621 aa13.27□□□□□ -0.28
CCDC40-207ENST00000572253 PLEKHM2Q8IWE5 1019 aa13.27□□□□□ -0.28
CCDC40-207ENST00000572253 ST18O60284 1047 aa13.27□□□□□ -0.29
CCDC40-207ENST00000572253 RPAP2Q8IXW5 612 aaPredicted RBP13.27□□□□□ -0.29
CCDC40-207ENST00000572253 BAG4O95429 457 aaKnown RBP13.27□□□□□ -0.29
CCDC40-207ENST00000572253 WAPLQ7Z5K2 1190 aa13.27□□□□□ -0.29
CCDC40-207ENST00000572253 OSCARQ8IYS5 282 aa13.27□□□□□ -0.29
CCDC40-207ENST00000572253 CDK12Q9NYV4 1490 aaPredicted RBP13.26□□□□□ -0.29
CCDC40-207ENST00000572253 NASPP49321 788 aaPredicted RBP13.26□□□□□ -0.29
CCDC40-207ENST00000572253 FBXO31Q5XUX0 539 aaPredicted RBP13.26□□□□□ -0.29
CCDC40-207ENST00000572253 GAS2L3Q86XJ1 694 aa13.26□□□□□ -0.29
CCDC40-207ENST00000572253 NCLP19338 710 aaKnown RBP13.26□□□□□ -0.29
CCDC40-207ENST00000572253 CLEC17AQ6ZS10 378 aa13.26□□□□□ -0.29
CCDC40-207ENST00000572253 NME9Q86XW9 330 aa13.26□□□□□ -0.29
CCDC40-207ENST00000572253 RIMS2Q9UQ26 1411 aa13.26□□□□□ -0.29
CCDC40-207ENST00000572253 PREX1Q8TCU6 1659 aa13.26□□□□□ -0.29
CCDC40-207ENST00000572253 CWC22Q9HCG8 908 aaKnown RBP13.26□□□□□ -0.29
CCDC40-207ENST00000572253 AATKQ6ZMQ8 1374 aa13.26□□□□□ -0.29
CCDC40-207ENST00000572253 REC8O95072 547 aa13.25□□□□□ -0.29
CCDC40-207ENST00000572253 GSPT1P15170 499 aaKnown RBP13.25□□□□□ -0.29
CCDC40-207ENST00000572253 ANKRD44Q8N8A2 993 aa13.25□□□□□ -0.29
CCDC40-207ENST00000572253 MYO5BQ9ULV0 1848 aa13.25□□□□□ -0.29
CCDC40-207ENST00000572253 DLC1Q96QB1 1528 aa13.25□□□□□ -0.29
CCDC40-207ENST00000572253 HMMRO75330 724 aa13.24□□□□□ -0.29
CCDC40-207ENST00000572253 YEATS2Q9ULM3 1422 aa13.24□□□□□ -0.29
CCDC40-207ENST00000572253 IBTKQ9P2D0 1353 aaPredicted RBP13.24□□□□□ -0.29
CCDC40-207ENST00000572253 WASLO00401 505 aaPredicted RBP13.24□□□□□ -0.29
CCDC40-207ENST00000572253 MCTP1Q6DN14 999 aa13.24□□□□□ -0.29
CCDC40-207ENST00000572253 USP26Q9BXU7 913 aa13.23□□□□□ -0.29
CCDC40-207ENST00000572253 FAM83GA6ND36 823 aa13.22□□□□□ -0.29
CCDC40-207ENST00000572253 CPSF1Q10570 1443 aaKnown RBP13.22□□□□□ -0.29
CCDC40-207ENST00000572253 MSNP26038 577 aaKnown RBP13.22□□□□□ -0.29
CCDC40-207ENST00000572253 RRS1Q15050 365 aaKnown RBP13.22□□□□□ -0.29
CCDC40-207ENST00000572253 MAP2P11137 1827 aaKnown RBP13.22□□□□□ -0.29
CCDC40-207ENST00000572253 DCTN1Q14203 1278 aa13.22□□□□□ -0.29
CCDC40-207ENST00000572253 APBB1O00213 710 aa13.22□□□□□ -0.29
CCDC40-207ENST00000572253 HSP90AA2PQ14568 343 aaPredicted RBP13.22□□□□□ -0.29
CCDC40-207ENST00000572253 PTPRCP08575 1304 aa13.21□□□□□ -0.29
CCDC40-207ENST00000572253 NUDT16Q96DE0 195 aaKnown RBP13.21□□□□□ -0.29
CCDC40-207ENST00000572253 CCDC61Q9Y6R9 512 aa13.21□□□□□ -0.29
CCDC40-207ENST00000572253 PPP1R9BQ96SB3 815 aa13.21□□□□□ -0.29
CCDC40-207ENST00000572253 TPM2P07951 284 aa13.21□□□□□ -0.3
CCDC40-207ENST00000572253 CEP85Q6P2H3 762 aa13.21□□□□□ -0.3
CCDC40-207ENST00000572253 PPP6R1Q9UPN7 881 aa13.21□□□□□ -0.3
CCDC40-207ENST00000572253 SDSP20132 328 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms