RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 FYB1O15117 783 aa8.85□□□□□ -0.99
VPS53-209ENST00000570771 PSME1Q06323 249 aa8.85□□□□□ -0.99
VPS53-209ENST00000570771 DDX10Q13206 875 aaKnown RBP8.85□□□□□ -0.99
VPS53-209ENST00000570771 LCE2DQ5TA82 110 aaPredicted RBP8.85□□□□□ -0.99
VPS53-209ENST00000570771 PAK3O75914 559 aaPredicted RBP8.84□□□□□ -0.99
VPS53-209ENST00000570771 PEAK1Q9H792 1746 aa8.84□□□□□ -0.99
VPS53-209ENST00000570771 USP31Q70CQ4 1352 aa8.84□□□□□ -0.99
VPS53-209ENST00000570771 JCADQ9P266 1359 aa8.84□□□□□ -0.99
VPS53-209ENST00000570771 CNGB1Q14028 1251 aaPredicted RBP8.83□□□□□ -1
VPS53-209ENST00000570771 DIEXFQ68CQ4 756 aaKnown RBP8.83□□□□□ -1
VPS53-209ENST00000570771 LMOD2Q6P5Q4 547 aa8.83□□□□□ -1
VPS53-209ENST00000570771 KIF20BQ96Q89 1820 aa8.82□□□□□ -1
VPS53-209ENST00000570771 SOX12O15370 315 aa8.82□□□□□ -1
VPS53-209ENST00000570771 HDGFL2Q7Z4V5 671 aaPredicted RBP8.82□□□□□ -1
VPS53-209ENST00000570771 TERF2IPQ9NYB0 399 aa8.82□□□□□ -1
VPS53-209ENST00000570771 NUTM2BA6NNL0 878 aaPredicted RBP8.81□□□□□ -1
VPS53-209ENST00000570771 NUTM2EB1AL46 878 aaPredicted RBP8.81□□□□□ -1
VPS53-209ENST00000570771 NUTM2AQ8IVF1 878 aaPredicted RBP8.81□□□□□ -1
VPS53-209ENST00000570771 ABTB2Q8N961 1025 aa8.81□□□□□ -1
VPS53-209ENST00000570771 LRRC59Q96AG4 307 aaKnown RBP8.81□□□□□ -1
VPS53-209ENST00000570771 ARHGEF10O15013 1369 aa8.81□□□□□ -1
VPS53-209ENST00000570771 KIAA0232Q92628 1395 aa8.81□□□□□ -1
VPS53-209ENST00000570771 LMO7Q8WWI1 1683 aa8.81□□□□□ -1
VPS53-209ENST00000570771 TTC21AQ8NDW8 1320 aa8.8□□□□□ -1
VPS53-209ENST00000570771 ADAMTS2O95450 1211 aa8.8□□□□□ -1
VPS53-209ENST00000570771 NLRP6P59044 892 aa8.8□□□□□ -1
VPS53-209ENST00000570771 RRS1Q15050 365 aaKnown RBP8.8□□□□□ -1
VPS53-209ENST00000570771 CHRNA2Q15822 529 aa8.8□□□□□ -1
VPS53-209ENST00000570771 CC2D1BQ5T0F9 858 aaKnown RBP8.8□□□□□ -1
VPS53-209ENST00000570771 RGS17Q9UGC6 210 aaPredicted RBP8.8□□□□□ -1
VPS53-209ENST00000570771 COL18A1P39060 1754 aa8.8□□□□□ -1
VPS53-209ENST00000570771 CAMTA1Q9Y6Y1 1673 aa8.79□□□□□ -1
VPS53-209ENST00000570771 BRD4O60885 1362 aaPredicted RBP8.79□□□□□ -1
VPS53-209ENST00000570771 ZBTB22O15209 634 aa8.79□□□□□ -1
VPS53-209ENST00000570771 GCP02774 474 aa8.79□□□□□ -1
VPS53-209ENST00000570771 TNNT2P45379 298 aaPredicted RBP8.79□□□□□ -1
VPS53-209ENST00000570771 ZC3H6P61129 1189 aaKnown RBP8.79□□□□□ -1
VPS53-209ENST00000570771 AXIN2Q9Y2T1 843 aa8.79□□□□□ -1
VPS53-209ENST00000570771 EMILIN1Q9Y6C2 1016 aa8.79□□□□□ -1
VPS53-209ENST00000570771 ANKRD26Q9UPS8 1709 aa8.79□□□□□ -1
VPS53-209ENST00000570771 MAP3K19Q56UN5 1328 aa8.79□□□□□ -1
VPS53-209ENST00000570771 COL3A1P02461 1466 aaPredicted RBP8.78□□□□□ -1
VPS53-209ENST00000570771 NRAPQ86VF7 1730 aa8.78□□□□□ -1
VPS53-209ENST00000570771 FAM83GA6ND36 823 aa8.78□□□□□ -1
VPS53-209ENST00000570771 PELP1Q8IZL8 1130 aaKnown RBP8.78□□□□□ -1
VPS53-209ENST00000570771 SLIT2O94813 1529 aa8.78□□□□□ -1
VPS53-209ENST00000570771 SMG6Q86US8 1419 aaKnown RBP8.78□□□□□ -1
VPS53-209ENST00000570771 PLCH1Q4KWH8 1693 aa8.78□□□□□ -1
VPS53-209ENST00000570771 CGNL1Q0VF96 1302 aa8.78□□□□□ -1
VPS53-209ENST00000570771 BCL9LQ86UU0 1499 aa8.77□□□□□ -1
VPS53-209ENST00000570771 PARD3Q8TEW0 1356 aa8.77□□□□□ -1.01
VPS53-209ENST00000570771 ARHGEF25Q86VW2 580 aa8.77□□□□□ -1.01
VPS53-209ENST00000570771 SPATA31A6Q5VVP1 1343 aa8.77□□□□□ -1.01
VPS53-209ENST00000570771 CPDO75976 1380 aa8.76□□□□□ -1.01
VPS53-209ENST00000570771 NPC1L1Q9UHC9 1359 aa8.76□□□□□ -1.01
VPS53-209ENST00000570771 ANP32CO43423 234 aa8.76□□□□□ -1.01
VPS53-209ENST00000570771 POTEJP0CG39 1038 aa8.76□□□□□ -1.01
VPS53-209ENST00000570771 CCDC184Q52MB2 194 aa8.76□□□□□ -1.01
VPS53-209ENST00000570771 COL5A2P05997 1499 aaPredicted RBP8.76□□□□□ -1.01
VPS53-209ENST00000570771 ZBTB7CA1YPR0 619 aa8.75□□□□□ -1.01
VPS53-209ENST00000570771 NLRP13Q86W25 1043 aa8.75□□□□□ -1.01
VPS53-209ENST00000570771 COG3Q96JB2 828 aa8.75□□□□□ -1.01
VPS53-209ENST00000570771 C8orf37Q96NL8 207 aa8.75□□□□□ -1.01
VPS53-209ENST00000570771 POLKQ9UBT6 870 aa8.75□□□□□ -1.01
VPS53-209ENST00000570771 KNSTRNQ9Y448 316 aa8.75□□□□□ -1.01
VPS53-209ENST00000570771 NSD2O96028 1365 aa8.74□□□□□ -1.01
VPS53-209ENST00000570771 LTN1O94822 1766 aa8.74□□□□□ -1.01
VPS53-209ENST00000570771 MAMSTRQ6ZN01 415 aa8.74□□□□□ -1.01
VPS53-209ENST00000570771 AFF2P51816 1311 aa8.74□□□□□ -1.01
VPS53-209ENST00000570771 AATKQ6ZMQ8 1374 aa8.73□□□□□ -1.01
VPS53-209ENST00000570771 GLI3P10071 1580 aa8.73□□□□□ -1.01
VPS53-209ENST00000570771 COL14A1Q05707 1796 aaKnown RBP8.73□□□□□ -1.01
VPS53-209ENST00000570771 PPP2R1AP30153 589 aa8.73□□□□□ -1.01
VPS53-209ENST00000570771 HOXC9P31274 260 aa8.73□□□□□ -1.01
VPS53-209ENST00000570771 HSP90AB2PQ58FF8 381 aa8.73□□□□□ -1.01
VPS53-209ENST00000570771 POTEAQ6S8J7 498 aa8.73□□□□□ -1.01
VPS53-209ENST00000570771 PRDM11Q9NQV5 511 aa8.73□□□□□ -1.01
VPS53-209ENST00000570771 METRNQ9UJH8 293 aa8.73□□□□□ -1.01
VPS53-209ENST00000570771 ATRNO75882 1429 aa8.72□□□□□ -1.01
VPS53-209ENST00000570771 FAM208AQ9UK61 1670 aaKnown RBP8.72□□□□□ -1.01
VPS53-209ENST00000570771 CDK12Q9NYV4 1490 aaPredicted RBP8.72□□□□□ -1.01
VPS53-209ENST00000570771 RGPD5Q99666 1765 aa8.72□□□□□ -1.01
VPS53-209ENST00000570771 LARP1Q6PKG0 1096 aaKnown RBP8.72□□□□□ -1.01
VPS53-209ENST00000570771 MORC1Q86VD1 984 aa8.72□□□□□ -1.01
VPS53-209ENST00000570771 FNBP4Q8N3X1 1017 aaPredicted RBP8.72□□□□□ -1.01
VPS53-209ENST00000570771 PRKRIP1Q9H875 184 aaPredicted RBP8.72□□□□□ -1.01
VPS53-209ENST00000570771 BTG4Q9NY30 223 aa8.72□□□□□ -1.01
VPS53-209ENST00000570771 USHBP1Q8N6Y0 703 aa8.71□□□□□ -1.02
VPS53-209ENST00000570771 ERBB3P21860 1342 aa8.71□□□□□ -1.02
VPS53-209ENST00000570771 ABCC6O95255 1503 aa8.7□□□□□ -1.02
VPS53-209ENST00000570771 MTHFSP49914 203 aa8.7□□□□□ -1.02
VPS53-209ENST00000570771 EIF4A2Q14240 407 aaKnown RBP8.7□□□□□ -1.02
VPS53-209ENST00000570771 RALBP1Q15311 655 aa8.7□□□□□ -1.02
VPS53-209ENST00000570771 IP6K1Q92551 441 aa8.7□□□□□ -1.02
VPS53-209ENST00000570771 PHF12Q96QT6 1004 aa8.7□□□□□ -1.02
VPS53-209ENST00000570771 RGPD1P0DJD0 1748 aa8.7□□□□□ -1.02
VPS53-209ENST00000570771 RGPD2P0DJD1 1756 aa8.7□□□□□ -1.02
VPS53-209ENST00000570771 EP400Q96L91 3159 aa8.7□□□□□ -1.02
VPS53-209ENST00000570771 RTL1A6NKG5 1358 aa8.7□□□□□ -1.02
VPS53-209ENST00000570771 FLT4P35916 1363 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms