RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 GLI3P10071 1580 aa8.98□□□□□ -0.97
VPS53-208ENST00000570650 ROCK1Q13464 1354 aa8.98□□□□□ -0.97
VPS53-208ENST00000570650 PRAG1Q86YV5 1406 aa8.97□□□□□ -0.97
VPS53-208ENST00000570650 PXDNQ92626 1479 aa8.97□□□□□ -0.97
VPS53-208ENST00000570650 SLIT2O94813 1529 aa8.97□□□□□ -0.97
VPS53-208ENST00000570650 NEXMIFQ5QGS0 1516 aa8.97□□□□□ -0.97
VPS53-208ENST00000570650 RIMBP2O15034 1052 aa8.97□□□□□ -0.97
VPS53-208ENST00000570650 SLC34A2O95436 690 aa8.97□□□□□ -0.97
VPS53-208ENST00000570650 HOXB1P14653 301 aaPredicted RBP8.97□□□□□ -0.97
VPS53-208ENST00000570650 ESCO1Q5FWF5 840 aa8.97□□□□□ -0.97
VPS53-208ENST00000570650 ARSIQ5FYB1 569 aa8.97□□□□□ -0.97
VPS53-208ENST00000570650 POTEGQ6S5H5 508 aa8.97□□□□□ -0.97
VPS53-208ENST00000570650 KHSRPQ92945 711 aaKnown RBP eCLIP8.97□□□□□ -0.97
VPS53-208ENST00000570650 LRPPRCP42704 1394 aaKnown RBP8.97□□□□□ -0.97
VPS53-208ENST00000570650 HFM1A2PYH4 1435 aa8.97□□□□□ -0.97
VPS53-208ENST00000570650 PSDA5PKW4 1024 aaPredicted RBP8.96□□□□□ -0.98
VPS53-208ENST00000570650 POTEMA6NI47 508 aa8.96□□□□□ -0.98
VPS53-208ENST00000570650 HRCP23327 699 aa8.96□□□□□ -0.98
VPS53-208ENST00000570650 BAG6P46379 1132 aa8.96□□□□□ -0.98
VPS53-208ENST00000570650 XPCQ01831 940 aaPredicted RBP8.96□□□□□ -0.98
VPS53-208ENST00000570650 SEPT12Q8IYM1 358 aa8.96□□□□□ -0.98
VPS53-208ENST00000570650 ZSWIM6Q9HCJ5 1215 aa8.96□□□□□ -0.98
VPS53-208ENST00000570650 BRWD3Q6RI45 1802 aa8.96□□□□□ -0.98
VPS53-208ENST00000570650 FOXO3O43524 673 aa8.95□□□□□ -0.98
VPS53-208ENST00000570650 PCDHGA4Q9Y5G9 962 aa8.95□□□□□ -0.98
VPS53-208ENST00000570650 KRT27Q7Z3Y8 459 aa8.94□□□□□ -0.98
VPS53-208ENST00000570650 CDC42BPGQ6DT37 1551 aa8.94□□□□□ -0.98
VPS53-208ENST00000570650 ONECUT3O60422 494 aaPredicted RBP8.93□□□□□ -0.98
VPS53-208ENST00000570650 EMP3P54852 163 aa8.93□□□□□ -0.98
VPS53-208ENST00000570650 VPS72Q15906 364 aa8.93□□□□□ -0.98
VPS53-208ENST00000570650 PTCD2Q8WV60 388 aaKnown RBP8.93□□□□□ -0.98
VPS53-208ENST00000570650 CLTCL1P53675 1640 aa8.93□□□□□ -0.98
VPS53-208ENST00000570650 USP32Q8NFA0 1604 aa8.92□□□□□ -0.98
VPS53-208ENST00000570650 SPATA31A3Q5VYP0 1347 aa8.92□□□□□ -0.98
VPS53-208ENST00000570650 HAP1P54257 671 aaPredicted RBP8.92□□□□□ -0.98
VPS53-208ENST00000570650 OXER1Q8TDS5 423 aa8.92□□□□□ -0.98
VPS53-208ENST00000570650 EMILIN3Q9NT22 766 aa8.92□□□□□ -0.98
VPS53-208ENST00000570650 CCDC9Q9Y3X0 531 aaKnown RBP8.92□□□□□ -0.98
VPS53-208ENST00000570650 KIF1BO60333 1816 aa8.91□□□□□ -0.98
VPS53-208ENST00000570650 CCDC144AA2RUR9 1427 aa8.9□□□□□ -0.98
VPS53-208ENST00000570650 NAIPQ13075 1403 aa8.9□□□□□ -0.98
VPS53-208ENST00000570650 RPGRIP1LQ68CZ1 1315 aa8.9□□□□□ -0.98
VPS53-208ENST00000570650 A0A0G2JS52 829 aa8.9□□□□□ -0.98
VPS53-208ENST00000570650 POTEB3A0JP26 581 aa8.9□□□□□ -0.98
VPS53-208ENST00000570650 NUTM2FA1L443 756 aa8.9□□□□□ -0.98
VPS53-208ENST00000570650 NUDT7P0C024 238 aa8.9□□□□□ -0.98
VPS53-208ENST00000570650 MYT1Q01538 1121 aa8.9□□□□□ -0.98
VPS53-208ENST00000570650 R3HDM1Q15032 1099 aaKnown RBP8.9□□□□□ -0.98
VPS53-208ENST00000570650 POTEBQ6S5H4 581 aa8.9□□□□□ -0.98
VPS53-208ENST00000570650 NWD2Q9ULI1 1742 aa8.89□□□□□ -0.99
VPS53-208ENST00000570650 FAM205CA6NFA0 338 aa8.89□□□□□ -0.99
VPS53-208ENST00000570650 YY1P25490 414 aa8.89□□□□□ -0.99
VPS53-208ENST00000570650 EN1Q05925 392 aaPredicted RBP8.89□□□□□ -0.99
VPS53-208ENST00000570650 CAMK2BQ13554 666 aa8.89□□□□□ -0.99
VPS53-208ENST00000570650 KRT28Q7Z3Y7 464 aa8.89□□□□□ -0.99
VPS53-208ENST00000570650 KIF1AQ12756 1690 aa8.88□□□□□ -0.99
VPS53-208ENST00000570650 TNS3Q68CZ2 1445 aa8.88□□□□□ -0.99
VPS53-208ENST00000570650 PLCH1Q4KWH8 1693 aa8.88□□□□□ -0.99
VPS53-208ENST00000570650 ITGAEP38570 1179 aa8.87□□□□□ -0.99
VPS53-208ENST00000570650 PSME1Q06323 249 aa8.87□□□□□ -0.99
VPS53-208ENST00000570650 CABLES1Q8TDN4 633 aa8.87□□□□□ -0.99
VPS53-208ENST00000570650 RGPD1P0DJD0 1748 aa8.87□□□□□ -0.99
VPS53-208ENST00000570650 DISP2A7MBM2 1401 aa8.87□□□□□ -0.99
VPS53-208ENST00000570650 TECPR2O15040 1411 aa8.87□□□□□ -0.99
VPS53-208ENST00000570650 FAM98CQ17RN3 349 aaKnown RBP8.86□□□□□ -0.99
VPS53-208ENST00000570650 WAPLQ7Z5K2 1190 aa8.86□□□□□ -0.99
VPS53-208ENST00000570650 HS3ST6Q96QI5 342 aa8.86□□□□□ -0.99
VPS53-208ENST00000570650 FMN2Q9NZ56 1722 aa8.85□□□□□ -0.99
VPS53-208ENST00000570650 ERBB3P21860 1342 aa8.85□□□□□ -0.99
VPS53-208ENST00000570650 FAM83GA6ND36 823 aa8.85□□□□□ -0.99
VPS53-208ENST00000570650 EZH2Q15910 746 aaKnown RBP8.85□□□□□ -0.99
VPS53-208ENST00000570650 WDR70Q9NW82 654 aa8.85□□□□□ -0.99
VPS53-208ENST00000570650 STK26Q9P289 416 aa8.85□□□□□ -0.99
VPS53-208ENST00000570650 PPLO60437 1756 aa8.85□□□□□ -0.99
VPS53-208ENST00000570650 SBNO1A3KN83 1393 aa8.85□□□□□ -0.99
VPS53-208ENST00000570650 ARHGEF10O15013 1369 aa8.85□□□□□ -0.99
VPS53-208ENST00000570650 ABCC11Q96J66 1382 aa8.85□□□□□ -0.99
VPS53-208ENST00000570650 ZNF316A6NFI3 1004 aaPredicted RBP8.84□□□□□ -0.99
VPS53-208ENST00000570650 TBC1D12O60347 775 aa8.84□□□□□ -0.99
VPS53-208ENST00000570650 VARS2Q5ST30 1063 aaKnown RBP8.84□□□□□ -0.99
VPS53-208ENST00000570650 FAM182BQ5T319 152 aa8.84□□□□□ -0.99
VPS53-208ENST00000570650 LMOD2Q6P5Q4 547 aa8.84□□□□□ -0.99
VPS53-208ENST00000570650 LHX6Q9UPM6 363 aa8.84□□□□□ -0.99
VPS53-208ENST00000570650 PLEKHH1Q9ULM0 1364 aa8.84□□□□□ -0.99
VPS53-208ENST00000570650 NRAPQ86VF7 1730 aa8.83□□□□□ -1
VPS53-208ENST00000570650 ABCA3Q99758 1704 aa8.83□□□□□ -1
VPS53-208ENST00000570650 E2F4Q16254 413 aa8.83□□□□□ -1
VPS53-208ENST00000570650 CAMKK2Q96RR4 588 aa8.83□□□□□ -1
VPS53-208ENST00000570650 BTG4Q9NY30 223 aa8.83□□□□□ -1
VPS53-208ENST00000570650 KNDC1Q76NI1 1749 aa8.83□□□□□ -1
VPS53-208ENST00000570650 TNS1Q9HBL0 1735 aaKnown RBP8.83□□□□□ -1
VPS53-208ENST00000570650 ADGRF5Q8IZF2 1346 aa8.82□□□□□ -1
VPS53-208ENST00000570650 ADGRB2O60241 1585 aa8.82□□□□□ -1
VPS53-208ENST00000570650 RRBP1Q9P2E9 1410 aaKnown RBP8.82□□□□□ -1
VPS53-208ENST00000570650 DPYSL4O14531 572 aa8.82□□□□□ -1
VPS53-208ENST00000570650 MAP3K9P80192 1104 aa8.82□□□□□ -1
VPS53-208ENST00000570650 PARD3Q8TEW0 1356 aa8.82□□□□□ -1
VPS53-208ENST00000570650 NRXN1Q9ULB1 1477 aa8.82□□□□□ -1
VPS53-208ENST00000570650 SPATA31A5Q5VU36 1347 aa8.81□□□□□ -1
VPS53-208ENST00000570650 SPATA31A7Q8IWB4 1347 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms