RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 RGS17Q9UGC6 210 aaPredicted RBP12.71□□□□□ -0.37
VPS35-211ENST00000569950 EMILIN1Q9Y6C2 1016 aa12.71□□□□□ -0.37
VPS35-211ENST00000569950 FAM208AQ9UK61 1670 aaKnown RBP12.7□□□□□ -0.38
VPS35-211ENST00000569950 FNBP4Q8N3X1 1017 aaPredicted RBP12.7□□□□□ -0.38
VPS35-211ENST00000569950 COL5A2P05997 1499 aaPredicted RBP12.7□□□□□ -0.38
VPS35-211ENST00000569950 CDK12Q9NYV4 1490 aaPredicted RBP12.7□□□□□ -0.38
VPS35-211ENST00000569950 MORC1Q86VD1 984 aa12.69□□□□□ -0.38
VPS35-211ENST00000569950 PRKRIP1Q9H875 184 aaPredicted RBP12.69□□□□□ -0.38
VPS35-211ENST00000569950 WNK3Q9BYP7 1800 aa12.69□□□□□ -0.38
VPS35-211ENST00000569950 RTL1A6NKG5 1358 aa12.69□□□□□ -0.38
VPS35-211ENST00000569950 INSRP06213 1382 aa12.69□□□□□ -0.38
VPS35-211ENST00000569950 KIF24Q5T7B8 1368 aa12.69□□□□□ -0.38
VPS35-211ENST00000569950 PPP2R1AP30153 589 aa12.68□□□□□ -0.38
VPS35-211ENST00000569950 TNNT2P45379 298 aaPredicted RBP12.68□□□□□ -0.38
VPS35-211ENST00000569950 PRDM11Q9NQV5 511 aa12.68□□□□□ -0.38
VPS35-211ENST00000569950 GLI3P10071 1580 aa12.68□□□□□ -0.38
VPS35-211ENST00000569950 HOXC9P31274 260 aa12.67□□□□□ -0.38
VPS35-211ENST00000569950 IP6K1Q92551 441 aa12.67□□□□□ -0.38
VPS35-211ENST00000569950 BLMP54132 1417 aaPredicted RBP12.67□□□□□ -0.38
VPS35-211ENST00000569950 NCAPD2Q15021 1401 aa12.67□□□□□ -0.38
VPS35-211ENST00000569950 AFF2P51816 1311 aa12.66□□□□□ -0.38
VPS35-211ENST00000569950 ATRNO75882 1429 aa12.66□□□□□ -0.38
VPS35-211ENST00000569950 CNGB1Q14028 1251 aaPredicted RBP12.66□□□□□ -0.38
VPS35-211ENST00000569950 HSP90AB2PQ58FF8 381 aa12.66□□□□□ -0.38
VPS35-211ENST00000569950 C8orf37Q96NL8 207 aa12.66□□□□□ -0.38
VPS35-211ENST00000569950 FLT4P35916 1363 aa12.66□□□□□ -0.38
VPS35-211ENST00000569950 MTHFSP49914 203 aa12.65□□□□□ -0.38
VPS35-211ENST00000569950 BTG4Q9NY30 223 aa12.65□□□□□ -0.38
VPS35-211ENST00000569950 ERBB3P21860 1342 aa12.64□□□□□ -0.39
VPS35-211ENST00000569950 HAP1P54257 671 aaPredicted RBP12.64□□□□□ -0.39
VPS35-211ENST00000569950 RALBP1Q15311 655 aa12.64□□□□□ -0.39
VPS35-211ENST00000569950 THSD7AQ9UPZ6 1657 aa12.64□□□□□ -0.39
VPS35-211ENST00000569950 CCDC184Q52MB2 194 aa12.63□□□□□ -0.39
VPS35-211ENST00000569950 NGLY1Q96IV0 654 aa12.63□□□□□ -0.39
VPS35-211ENST00000569950 SHANK3Q9BYB0 1731 aa12.62□□□□□ -0.39
VPS35-211ENST00000569950 LARP1Q6PKG0 1096 aaKnown RBP12.62□□□□□ -0.39
VPS35-211ENST00000569950 UNC5CLQ8IV45 518 aa12.62□□□□□ -0.39
VPS35-211ENST00000569950 WDR17Q8IZU2 1322 aa12.62□□□□□ -0.39
VPS35-211ENST00000569950 ZBTB7CA1YPR0 619 aa12.61□□□□□ -0.39
VPS35-211ENST00000569950 EIF4A2Q14240 407 aaKnown RBP12.61□□□□□ -0.39
VPS35-211ENST00000569950 DISP2A7MBM2 1401 aa12.61□□□□□ -0.39
VPS35-211ENST00000569950 CRB1P82279 1406 aa12.61□□□□□ -0.39
VPS35-211ENST00000569950 MYBBP1AQ9BQG0 1328 aaKnown RBP12.61□□□□□ -0.39
VPS35-211ENST00000569950 IL13P35225 146 aa12.6□□□□□ -0.39
VPS35-211ENST00000569950 AMPHP49418 695 aa12.6□□□□□ -0.39
VPS35-211ENST00000569950 VPS72Q15906 364 aa12.6□□□□□ -0.39
VPS35-211ENST00000569950 MEX3CQ5U5Q3 659 aaKnown RBP12.6□□□□□ -0.39
VPS35-211ENST00000569950 POTEAQ6S8J7 498 aa12.6□□□□□ -0.39
VPS35-211ENST00000569950 ANKRD24Q8TF21 1146 aa12.6□□□□□ -0.39
VPS35-211ENST00000569950 USP21Q9UK80 565 aa12.6□□□□□ -0.39
VPS35-211ENST00000569950 BRWD3Q6RI45 1802 aa12.6□□□□□ -0.39
VPS35-211ENST00000569950 SPATA31A1Q5TZJ5 1347 aa12.6□□□□□ -0.39
VPS35-211ENST00000569950 SPATA31A5Q5VU36 1347 aa12.6□□□□□ -0.39
VPS35-211ENST00000569950 SPATA31A7Q8IWB4 1347 aa12.6□□□□□ -0.39
VPS35-211ENST00000569950 PARP4Q9UKK3 1724 aaKnown RBP12.59□□□□□ -0.39
VPS35-211ENST00000569950 NBPF6Q5VWK0 638 aa12.59□□□□□ -0.39
VPS35-211ENST00000569950 NBPF4Q96M43 638 aa12.59□□□□□ -0.39
VPS35-211ENST00000569950 LRRC37A3O60309 1634 aa12.59□□□□□ -0.39
VPS35-211ENST00000569950 EP400Q96L91 3159 aa12.58□□□□□ -0.4
VPS35-211ENST00000569950 PPM1GO15355 546 aaPredicted RBP12.58□□□□□ -0.4
VPS35-211ENST00000569950 DIEXFQ68CQ4 756 aaKnown RBP12.58□□□□□ -0.4
VPS35-211ENST00000569950 PKD1L3Q7Z443 1732 aa12.58□□□□□ -0.4
VPS35-211ENST00000569950 EYA1Q99502 592 aa12.58□□□□□ -0.4
VPS35-211ENST00000569950 IGSF1Q8N6C5 1336 aa12.58□□□□□ -0.4
VPS35-211ENST00000569950 MEGF6O75095 1541 aa12.57□□□□□ -0.4
VPS35-211ENST00000569950 KDRP35968 1356 aa12.57□□□□□ -0.4
VPS35-211ENST00000569950 STRN4Q9NRL3 753 aa12.57□□□□□ -0.4
VPS35-211ENST00000569950 LTV1Q96GA3 475 aaPredicted RBP12.56□□□□□ -0.4
VPS35-211ENST00000569950 CARD10Q9BWT7 1032 aa12.56□□□□□ -0.4
VPS35-211ENST00000569950 ONECUT3O60422 494 aaPredicted RBP12.55□□□□□ -0.4
VPS35-211ENST00000569950 AEBP1Q8IUX7 1158 aa12.55□□□□□ -0.4
VPS35-211ENST00000569950 USHBP1Q8N6Y0 703 aa12.55□□□□□ -0.4
VPS35-211ENST00000569950 GJD4Q96KN9 370 aaPredicted RBP12.55□□□□□ -0.4
VPS35-211ENST00000569950 QTRT2Q9H974 415 aaKnown RBP12.55□□□□□ -0.4
VPS35-211ENST00000569950 ANP32CO43423 234 aa12.54□□□□□ -0.4
VPS35-211ENST00000569950 ZNF772Q68DY9 489 aaPredicted RBP12.54□□□□□ -0.4
VPS35-211ENST00000569950 TRPC5Q9UL62 973 aaPredicted RBP12.54□□□□□ -0.4
VPS35-211ENST00000569950 RGS12O14924 1447 aa12.54□□□□□ -0.4
VPS35-211ENST00000569950 DIAPH1O60610 1272 aaKnown RBP12.53□□□□□ -0.4
VPS35-211ENST00000569950 MIER1Q8N108 512 aa12.53□□□□□ -0.4
VPS35-211ENST00000569950 OVOS2A0A0G2JMS6 1433 aa12.53□□□□□ -0.4
VPS35-211ENST00000569950 EVA1CP58658 441 aa12.52□□□□□ -0.41
VPS35-211ENST00000569950 BARGINQ6ZT62 677 aa12.52□□□□□ -0.41
VPS35-211ENST00000569950 TOM1L2Q6ZVM7 507 aa12.52□□□□□ -0.41
VPS35-211ENST00000569950 NLRP2Q9NX02 1062 aa12.52□□□□□ -0.41
VPS35-211ENST00000569950 VIRMAQ69YN4 1812 aaKnown RBP12.52□□□□□ -0.41
VPS35-211ENST00000569950 RBM6P78332 1123 aaKnown RBP12.51□□□□□ -0.41
VPS35-211ENST00000569950 TCP11L2Q8N4U5 519 aa12.51□□□□□ -0.41
VPS35-211ENST00000569950 DLG5Q8TDM6 1919 aa12.5□□□□□ -0.41
VPS35-211ENST00000569950 CSB-PGBD3P0DP91 1061 aa12.5□□□□□ -0.41
VPS35-211ENST00000569950 PNISRQ8TF01 805 aaKnown RBP12.5□□□□□ -0.41
VPS35-211ENST00000569950 RSPH6AQ9H0K4 717 aa12.5□□□□□ -0.41
VPS35-211ENST00000569950 USP35Q9P2H5 1018 aa12.5□□□□□ -0.41
VPS35-211ENST00000569950 THRAP3Q9Y2W1 955 aaKnown RBP12.5□□□□□ -0.41
VPS35-211ENST00000569950 ADAMTS7Q9UKP4 1686 aa12.5□□□□□ -0.41
VPS35-211ENST00000569950 TOGARAM1Q9Y4F4 1720 aa12.5□□□□□ -0.41
VPS35-211ENST00000569950 SBF2Q86WG5 1849 aa12.49□□□□□ -0.41
VPS35-211ENST00000569950 TNS2Q63HR2 1409 aa12.49□□□□□ -0.41
VPS35-211ENST00000569950 PLEKHG2Q9H7P9 1386 aa12.49□□□□□ -0.41
VPS35-211ENST00000569950 FAM98CQ17RN3 349 aaKnown RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms