RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 COG3Q96JB2 828 aa17.84■□□□□ 0.45
VPS35-210ENST00000568784 KIAA1211Q6ZU35 1233 aa17.83■□□□□ 0.45
VPS35-210ENST00000568784 NPATQ14207 1427 aa17.83■□□□□ 0.45
VPS35-210ENST00000568784 NCKAP5LQ9HCH0 1330 aa17.83■□□□□ 0.44
VPS35-210ENST00000568784 R3HCC1Q9Y3T6 440 aaKnown RBP17.83■□□□□ 0.44
VPS35-210ENST00000568784 PTMSP20962 102 aa17.82■□□□□ 0.44
VPS35-210ENST00000568784 INTS3Q68E01 1043 aaKnown RBP17.82■□□□□ 0.44
VPS35-210ENST00000568784 MCM10Q7L590 875 aa17.82■□□□□ 0.44
VPS35-210ENST00000568784 PKP1Q13835 747 aa17.82■□□□□ 0.44
VPS35-210ENST00000568784 NSD2O96028 1365 aa17.82■□□□□ 0.44
VPS35-210ENST00000568784 ZNF692Q9BU19 519 aaPredicted RBP17.82■□□□□ 0.44
VPS35-210ENST00000568784 FAM13BQ9NYF5 915 aa17.82■□□□□ 0.44
VPS35-210ENST00000568784 CEP152O94986 1710 aa17.82■□□□□ 0.44
VPS35-210ENST00000568784 IL16Q14005 1332 aa17.82■□□□□ 0.44
VPS35-210ENST00000568784 ZGPATQ8N5A5 531 aaKnown RBP17.82■□□□□ 0.44
VPS35-210ENST00000568784 CHD1O14646 1710 aa17.81■□□□□ 0.44
VPS35-210ENST00000568784 RABEP1Q15276 862 aa17.81■□□□□ 0.44
VPS35-210ENST00000568784 SULT6B1Q6IMI4 303 aa17.81■□□□□ 0.44
VPS35-210ENST00000568784 NEK4P51957 841 aa17.81■□□□□ 0.44
VPS35-210ENST00000568784 TXNDC2Q86VQ3 553 aa17.81■□□□□ 0.44
VPS35-210ENST00000568784 SIRT2Q8IXJ6 389 aa17.81■□□□□ 0.44
VPS35-210ENST00000568784 MYOM2P54296 1465 aa17.8■□□□□ 0.44
VPS35-210ENST00000568784 ZCCHC11Q5TAX3 1644 aaKnown RBP17.8■□□□□ 0.44
VPS35-210ENST00000568784 NUCB2P80303 420 aa17.8■□□□□ 0.44
VPS35-210ENST00000568784 LMOD3Q0VAK6 560 aa17.8■□□□□ 0.44
VPS35-210ENST00000568784 ESF1Q9H501 851 aaKnown RBP17.8■□□□□ 0.44
VPS35-210ENST00000568784 F6X3S4 739 aa17.79■□□□□ 0.44
VPS35-210ENST00000568784 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.79■□□□□ 0.44
VPS35-210ENST00000568784 GSPT1P15170 499 aaKnown RBP17.79■□□□□ 0.44
VPS35-210ENST00000568784 CCDC173Q0VFZ6 552 aa17.79■□□□□ 0.44
VPS35-210ENST00000568784 ANO2Q9NQ90 1003 aa17.79■□□□□ 0.44
VPS35-210ENST00000568784 PPIP5K1Q6PFW1 1433 aa17.79■□□□□ 0.44
VPS35-210ENST00000568784 PLEKHM2Q8IWE5 1019 aa17.78■□□□□ 0.44
VPS35-210ENST00000568784 TET3O43151 1660 aa17.78■□□□□ 0.44
VPS35-210ENST00000568784 IQSEC2Q5JU85 1478 aa17.78■□□□□ 0.44
VPS35-210ENST00000568784 EXOC6BQ9Y2D4 811 aa17.78■□□□□ 0.44
VPS35-210ENST00000568784 SLC4A2P04920 1241 aa17.78■□□□□ 0.44
VPS35-210ENST00000568784 AEBP1Q8IUX7 1158 aa17.78■□□□□ 0.44
VPS35-210ENST00000568784 ASXL2Q76L83 1435 aa17.77■□□□□ 0.44
VPS35-210ENST00000568784 KIF2CQ99661 725 aa17.77■□□□□ 0.44
VPS35-210ENST00000568784 SYCE3A1L190 88 aa17.77■□□□□ 0.43
VPS35-210ENST00000568784 MEIS3Q99687 375 aa17.77■□□□□ 0.43
VPS35-210ENST00000568784 ISY1Q9ULR0 285 aaKnown RBP17.77■□□□□ 0.43
VPS35-210ENST00000568784 SDSP20132 328 aa17.76■□□□□ 0.43
VPS35-210ENST00000568784 XPCQ01831 940 aaPredicted RBP17.76■□□□□ 0.43
VPS35-210ENST00000568784 IFT57Q9NWB7 429 aa17.76■□□□□ 0.43
VPS35-210ENST00000568784 REC8O95072 547 aa17.76■□□□□ 0.43
VPS35-210ENST00000568784 RTF1Q92541 710 aaKnown RBP17.76■□□□□ 0.43
VPS35-210ENST00000568784 TTC22Q5TAA0 569 aa17.76■□□□□ 0.43
VPS35-210ENST00000568784 KIF1BO60333 1816 aa17.75■□□□□ 0.43
VPS35-210ENST00000568784 KLHL40Q2TBA0 621 aa17.75■□□□□ 0.43
VPS35-210ENST00000568784 ZSCAN30Q86W11 494 aa17.75■□□□□ 0.43
VPS35-210ENST00000568784 C14orf37Q86TY3 774 aa17.75■□□□□ 0.43
VPS35-210ENST00000568784 GDPD2Q9HCC8 539 aa17.75■□□□□ 0.43
VPS35-210ENST00000568784 ZMYM3Q14202 1370 aa17.74■□□□□ 0.43
VPS35-210ENST00000568784 HMMRO75330 724 aa17.74■□□□□ 0.43
VPS35-210ENST00000568784 UPF3BQ9BZI7 483 aaKnown RBP17.74■□□□□ 0.43
VPS35-210ENST00000568784 SLC52A1Q9NWF4 448 aa17.74■□□□□ 0.43
VPS35-210ENST00000568784 CFAP44Q96MT7 982 aa17.74■□□□□ 0.43
VPS35-210ENST00000568784 ZSCAN23Q3MJ62 389 aa17.74■□□□□ 0.43
VPS35-210ENST00000568784 ZNF428Q96B54 188 aa17.73■□□□□ 0.43
VPS35-210ENST00000568784 PRIM1P49642 420 aaKnown RBP17.73■□□□□ 0.43
VPS35-210ENST00000568784 SHROOM2Q13796 1616 aa17.72■□□□□ 0.43
VPS35-210ENST00000568784 LTV1Q96GA3 475 aaPredicted RBP17.72■□□□□ 0.43
VPS35-210ENST00000568784 DTNBO60941 627 aa17.72■□□□□ 0.43
VPS35-210ENST00000568784 MAP4K4O95819 1239 aaPredicted RBP17.72■□□□□ 0.43
VPS35-210ENST00000568784 MCCP23508 829 aa17.71■□□□□ 0.43
VPS35-210ENST00000568784 LARP6Q9BRS8 491 aaKnown RBP17.71■□□□□ 0.43
VPS35-210ENST00000568784 RRP9O43818 475 aaKnown RBP17.71■□□□□ 0.43
VPS35-210ENST00000568784 TSPYL4Q9UJ04 414 aa17.71■□□□□ 0.43
VPS35-210ENST00000568784 FKBP5Q13451 457 aaPredicted RBP17.71■□□□□ 0.43
VPS35-210ENST00000568784 USP26Q9BXU7 913 aa17.71■□□□□ 0.43
VPS35-210ENST00000568784 STK31Q9BXU1 1019 aa17.7■□□□□ 0.42
VPS35-210ENST00000568784 ERC2O15083 957 aa17.7■□□□□ 0.42
VPS35-210ENST00000568784 ARHGAP45Q92619 1136 aa17.7■□□□□ 0.42
VPS35-210ENST00000568784 RBSNQ9H1K0 784 aa17.7■□□□□ 0.42
VPS35-210ENST00000568784 DCTPP1Q9H773 170 aa17.7■□□□□ 0.42
VPS35-210ENST00000568784 EFCAB6Q5THR3 1501 aa17.7■□□□□ 0.42
VPS35-210ENST00000568784 ZMYND15Q9H091 742 aa17.69■□□□□ 0.42
VPS35-210ENST00000568784 IL1RAPL2Q9NP60 686 aa17.69■□□□□ 0.42
VPS35-210ENST00000568784 QRICH2Q9H0J4 1663 aa17.68■□□□□ 0.42
VPS35-210ENST00000568784 HAP1P54257 671 aaPredicted RBP17.68■□□□□ 0.42
VPS35-210ENST00000568784 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.68■□□□□ 0.42
VPS35-210ENST00000568784 NUDT16Q96DE0 195 aaKnown RBP17.68■□□□□ 0.42
VPS35-210ENST00000568784 PUS7Q96PZ0 661 aaKnown RBP17.68■□□□□ 0.42
VPS35-210ENST00000568784 PKNOX2Q96KN3 472 aa17.68■□□□□ 0.42
VPS35-210ENST00000568784 CEP85Q6P2H3 762 aa17.67■□□□□ 0.42
VPS35-210ENST00000568784 ANKRD44Q8N8A2 993 aa17.67■□□□□ 0.42
VPS35-210ENST00000568784 TULP4Q9NRJ4 1543 aa17.67■□□□□ 0.42
VPS35-210ENST00000568784 NUTM2GQ5VZR2 741 aa17.67■□□□□ 0.42
VPS35-210ENST00000568784 RPAP2Q8IXW5 612 aaPredicted RBP17.67■□□□□ 0.42
VPS35-210ENST00000568784 IL13P35225 146 aa17.66■□□□□ 0.42
VPS35-210ENST00000568784 OS9Q13438 667 aaPredicted RBP17.66■□□□□ 0.42
VPS35-210ENST00000568784 SHPRHQ149N8 1683 aa17.66■□□□□ 0.42
VPS35-210ENST00000568784 DDIT3P35638 169 aa17.66■□□□□ 0.42
VPS35-210ENST00000568784 LMBRD1Q9NUN5 540 aa17.66■□□□□ 0.42
VPS35-210ENST00000568784 CHMP3Q9Y3E7 222 aa17.66■□□□□ 0.42
VPS35-210ENST00000568784 FOXO3O43524 673 aa17.65■□□□□ 0.42
VPS35-210ENST00000568784 TPM2P07951 284 aa17.65■□□□□ 0.42
VPS35-210ENST00000568784 MROH2AA6NES4 1674 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms