RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ZIC2O95409 532 aaPredicted RBP5.41□□□□□ -1.54
VPS35-208ENST00000568612 GRM5P41594 1212 aa5.41□□□□□ -1.54
VPS35-208ENST00000568612 NR1H3Q13133 447 aa5.41□□□□□ -1.54
VPS35-208ENST00000568612 NBPF20Q3BBV1 942 aa5.41□□□□□ -1.54
VPS35-208ENST00000568612 ZNF787Q6DD87 383 aa5.41□□□□□ -1.54
VPS35-208ENST00000568612 CCDC116Q8IYX3 515 aa5.41□□□□□ -1.54
VPS35-208ENST00000568612 MAP4K5Q9Y4K4 846 aa5.41□□□□□ -1.54
VPS35-208ENST00000568612 RAD21O60216 631 aa5.4□□□□□ -1.54
VPS35-208ENST00000568612 BMP1P13497 986 aa5.4□□□□□ -1.54
VPS35-208ENST00000568612 UBTFP17480 764 aaKnown RBP5.4□□□□□ -1.54
VPS35-208ENST00000568612 SMCPP49901 116 aaPredicted RBP5.4□□□□□ -1.54
VPS35-208ENST00000568612 FLIIQ13045 1269 aa5.4□□□□□ -1.54
VPS35-208ENST00000568612 CRIPAKQ8N1N5 446 aa5.4□□□□□ -1.54
VPS35-208ENST00000568612 ZFAND3Q9H8U3 227 aa5.4□□□□□ -1.54
VPS35-208ENST00000568612 TIMP2P16035 220 aa5.39□□□□□ -1.55
VPS35-208ENST00000568612 VAC14Q08AM6 782 aa5.39□□□□□ -1.55
VPS35-208ENST00000568612 PPP1R26Q5T8A7 1209 aaPredicted RBP5.39□□□□□ -1.55
VPS35-208ENST00000568612 ITPKCQ96DU7 683 aa5.39□□□□□ -1.55
VPS35-208ENST00000568612 ATP13A2Q9NQ11 1180 aa5.39□□□□□ -1.55
VPS35-208ENST00000568612 PGPEP1Q9NXJ5 209 aa5.39□□□□□ -1.55
VPS35-208ENST00000568612 GMPR2Q9P2T1 348 aaKnown RBP5.39□□□□□ -1.55
VPS35-208ENST00000568612 EMILIN1Q9Y6C2 1016 aa5.39□□□□□ -1.55
VPS35-208ENST00000568612 GPR37L1O60883 481 aa5.38□□□□□ -1.55
VPS35-208ENST00000568612 DHX9Q08211 1270 aaKnown RBP5.38□□□□□ -1.55
VPS35-208ENST00000568612 INTS6LQ5JSJ4 861 aaKnown RBP5.38□□□□□ -1.55
VPS35-208ENST00000568612 WWC1Q8IX03 1113 aa5.38□□□□□ -1.55
VPS35-208ENST00000568612 POTECB2RU33 542 aa5.37□□□□□ -1.55
VPS35-208ENST00000568612 C11orf95C9JLR9 678 aaPredicted RBP5.37□□□□□ -1.55
VPS35-208ENST00000568612 GIGYF1O75420 1035 aaPredicted RBP5.37□□□□□ -1.55
VPS35-208ENST00000568612 UPP2O95045 317 aa5.37□□□□□ -1.55
VPS35-208ENST00000568612 EIF4G2P78344 907 aaKnown RBP eCLIP5.37□□□□□ -1.55
VPS35-208ENST00000568612 C6orf118Q5T5N4 469 aa5.37□□□□□ -1.55
VPS35-208ENST00000568612 ZNF592Q92610 1267 aa5.37□□□□□ -1.55
VPS35-208ENST00000568612 POM121Q96HA1 1249 aa5.37□□□□□ -1.55
VPS35-208ENST00000568612 TMPRSS4Q9NRS4 437 aa5.37□□□□□ -1.55
VPS35-208ENST00000568612 COG6Q9Y2V7 657 aa5.37□□□□□ -1.55
VPS35-208ENST00000568612 ERVH48-1M5A8F1 160 aa5.36□□□□□ -1.55
VPS35-208ENST00000568612 IRF5Q13568 498 aa5.36□□□□□ -1.55
VPS35-208ENST00000568612 SCARF1Q14162 830 aa5.36□□□□□ -1.55
VPS35-208ENST00000568612 MRPL14Q6P1L8 145 aaKnown RBP5.36□□□□□ -1.55
VPS35-208ENST00000568612 PURBQ96QR8 312 aaKnown RBP5.36□□□□□ -1.55
VPS35-208ENST00000568612 BMP2P12643 396 aa5.35□□□□□ -1.55
VPS35-208ENST00000568612 MCCD1P59942 119 aaPredicted RBP5.35□□□□□ -1.55
VPS35-208ENST00000568612 CBLBQ13191 982 aa5.35□□□□□ -1.55
VPS35-208ENST00000568612 WASHC4Q2M389 1173 aa5.35□□□□□ -1.55
VPS35-208ENST00000568612 TRIM46Q7Z4K8 759 aa5.35□□□□□ -1.55
VPS35-208ENST00000568612 ZNF784Q8NCA9 323 aaPredicted RBP5.35□□□□□ -1.55
VPS35-208ENST00000568612 KLF16Q9BXK1 252 aaPredicted RBP5.35□□□□□ -1.55
VPS35-208ENST00000568612 ESF1Q9H501 851 aaKnown RBP5.35□□□□□ -1.55
VPS35-208ENST00000568612 SENP2Q9HC62 589 aa5.35□□□□□ -1.55
VPS35-208ENST00000568612 CYLDQ9NQC7 956 aa5.35□□□□□ -1.55
VPS35-208ENST00000568612 SEMA3FQ13275 785 aa5.34□□□□□ -1.55
VPS35-208ENST00000568612 RNF20Q5VTR2 975 aa5.34□□□□□ -1.55
VPS35-208ENST00000568612 KIFC2Q96AC6 838 aa5.34□□□□□ -1.55
VPS35-208ENST00000568612 ZFP42Q96MM3 310 aa5.34□□□□□ -1.55
VPS35-208ENST00000568612 PCDHB11Q9Y5F2 797 aa5.34□□□□□ -1.55
VPS35-208ENST00000568612 ESPNB1AK53 854 aa5.33□□□□□ -1.56
VPS35-208ENST00000568612 SNRPBP14678 240 aaKnown RBP5.33□□□□□ -1.56
VPS35-208ENST00000568612 RELBQ01201 579 aa5.33□□□□□ -1.56
VPS35-208ENST00000568612 SLFNL1Q499Z3 407 aa5.33□□□□□ -1.56
VPS35-208ENST00000568612 SEPT12Q8IYM1 358 aa5.33□□□□□ -1.56
VPS35-208ENST00000568612 LINC00528Q8N1L1 170 aa5.33□□□□□ -1.56
VPS35-208ENST00000568612 MEIOBQ8N635 442 aa5.33□□□□□ -1.56
VPS35-208ENST00000568612 TRIM52Q96A61 297 aa5.33□□□□□ -1.56
VPS35-208ENST00000568612 CLUAP1Q96AJ1 413 aa5.33□□□□□ -1.56
VPS35-208ENST00000568612 AGBL1Q96MI9 1066 aa5.33□□□□□ -1.56
VPS35-208ENST00000568612 TRIM47Q96LD4 638 aa5.32□□□□□ -1.56
VPS35-208ENST00000568612 TSEN34Q9BSV6 310 aaKnown RBP5.32□□□□□ -1.56
VPS35-208ENST00000568612 CEP126Q9P2H0 1117 aa5.32□□□□□ -1.56
VPS35-208ENST00000568612 RNF135Q8IUD6 432 aa5.31□□□□□ -1.56
VPS35-208ENST00000568612 ZNF395Q9H8N7 513 aaPredicted RBP5.31□□□□□ -1.56
VPS35-208ENST00000568612 SOBPA7XYQ1 873 aa5.3□□□□□ -1.56
VPS35-208ENST00000568612 MAN1A2O60476 641 aa5.3□□□□□ -1.56
VPS35-208ENST00000568612 SOX11P35716 441 aa5.3□□□□□ -1.56
VPS35-208ENST00000568612 CC2D2BQ6DHV5 1058 aa5.3□□□□□ -1.56
VPS35-208ENST00000568612 Q6ZVU0 165 aa5.3□□□□□ -1.56
VPS35-208ENST00000568612 POLMQ9NP87 494 aaPredicted RBP5.3□□□□□ -1.56
VPS35-208ENST00000568612 DOLKQ9UPQ8 538 aa5.3□□□□□ -1.56
VPS35-208ENST00000568612 FIGNL2A6NMB9 653 aa5.29□□□□□ -1.56
VPS35-208ENST00000568612 POM121CA8CG34 1229 aa5.29□□□□□ -1.56
VPS35-208ENST00000568612 LILRA1O75019 489 aa5.29□□□□□ -1.56
VPS35-208ENST00000568612 MYCP01106 439 aaPredicted RBP5.29□□□□□ -1.56
VPS35-208ENST00000568612 ADH1AP07327 375 aa5.29□□□□□ -1.56
VPS35-208ENST00000568612 ADD1P35611 737 aaKnown RBP5.29□□□□□ -1.56
VPS35-208ENST00000568612 SCTRP47872 440 aa5.29□□□□□ -1.56
VPS35-208ENST00000568612 OXLD1Q5BKU9 147 aa5.29□□□□□ -1.56
VPS35-208ENST00000568612 PROSER2Q86WR7 435 aaPredicted RBP5.29□□□□□ -1.56
VPS35-208ENST00000568612 CCDC125Q86Z20 511 aa5.29□□□□□ -1.56
VPS35-208ENST00000568612 TTLL8A6PVC2 850 aa5.28□□□□□ -1.56
VPS35-208ENST00000568612 ATP5J2-PTCD1G3V325 749 aa5.28□□□□□ -1.56
VPS35-208ENST00000568612 ZNF775Q96BV0 537 aaPredicted RBP5.28□□□□□ -1.56
VPS35-208ENST00000568612 CCDC85AQ96PX6 553 aaPredicted RBP5.28□□□□□ -1.56
VPS35-208ENST00000568612 INSM2Q96T92 566 aaPredicted RBP5.28□□□□□ -1.56
VPS35-208ENST00000568612 CDCA7Q9BWT1 371 aaPredicted RBP5.28□□□□□ -1.56
VPS35-208ENST00000568612 MEN1O00255 615 aa5.27□□□□□ -1.57
VPS35-208ENST00000568612 SKIP12755 728 aa5.27□□□□□ -1.57
VPS35-208ENST00000568612 PTGIRP43119 386 aa5.27□□□□□ -1.57
VPS35-208ENST00000568612 ERVK-9P63128 1117 aa5.27□□□□□ -1.57
VPS35-208ENST00000568612 TSGA10IPQ3SY00 556 aa5.27□□□□□ -1.57
VPS35-208ENST00000568612 CYP2U1Q7Z449 544 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms