RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 SYMPKQ92797 1274 aaKnown RBP9.29□□□□□ -0.92
VPS39-209ENST00000568029 MSS51Q4VC12 460 aa9.28□□□□□ -0.92
VPS39-209ENST00000568029 RNF19BQ6ZMZ0 732 aa9.28□□□□□ -0.92
VPS39-209ENST00000568029 CTDSPL2Q05D32 466 aa9.27□□□□□ -0.93
VPS39-209ENST00000568029 FAM9AQ8IZU1 332 aaPredicted RBP9.27□□□□□ -0.93
VPS39-209ENST00000568029 COG6Q9Y2V7 657 aa9.27□□□□□ -0.93
VPS39-209ENST00000568029 ATP10BO94823 1461 aa9.27□□□□□ -0.93
VPS39-209ENST00000568029 NEO1Q92859 1461 aa9.27□□□□□ -0.93
VPS39-209ENST00000568029 CLUAP1Q96AJ1 413 aa9.26□□□□□ -0.93
VPS39-209ENST00000568029 GJD4Q96KN9 370 aaPredicted RBP9.26□□□□□ -0.93
VPS39-209ENST00000568029 RAPGEF2Q9Y4G8 1499 aa9.26□□□□□ -0.93
VPS39-209ENST00000568029 ZMYM4Q5VZL5 1548 aa9.26□□□□□ -0.93
VPS39-209ENST00000568029 ZFYVE16Q7Z3T8 1539 aa9.26□□□□□ -0.93
VPS39-209ENST00000568029 MED1Q15648 1581 aaPredicted RBP9.25□□□□□ -0.93
VPS39-209ENST00000568029 MLECQ14165 292 aa9.25□□□□□ -0.93
VPS39-209ENST00000568029 LYPD8Q6UX82 237 aa9.25□□□□□ -0.93
VPS39-209ENST00000568029 PROSER2Q86WR7 435 aaPredicted RBP9.25□□□□□ -0.93
VPS39-209ENST00000568029 FNBP4Q8N3X1 1017 aaPredicted RBP9.25□□□□□ -0.93
VPS39-209ENST00000568029 FANCAO15360 1455 aa9.25□□□□□ -0.93
VPS39-209ENST00000568029 ARHGEF12Q9NZN5 1544 aa9.25□□□□□ -0.93
VPS39-209ENST00000568029 TRAK2O60296 914 aa9.24□□□□□ -0.93
VPS39-209ENST00000568029 ZPR1O75312 459 aa9.24□□□□□ -0.93
VPS39-209ENST00000568029 CEBPAP49715 358 aaPredicted RBP9.24□□□□□ -0.93
VPS39-209ENST00000568029 IL21Q9HBE4 155 aa9.24□□□□□ -0.93
VPS39-209ENST00000568029 NDUFB9Q9Y6M9 179 aa9.24□□□□□ -0.93
VPS39-209ENST00000568029 HECW1Q76N89 1606 aa9.23□□□□□ -0.93
VPS39-209ENST00000568029 JUNDP17535 347 aa9.23□□□□□ -0.93
VPS39-209ENST00000568029 TJAP1Q5JTD0 557 aa9.23□□□□□ -0.93
VPS39-209ENST00000568029 POM121Q96HA1 1249 aa9.23□□□□□ -0.93
VPS39-209ENST00000568029 SPSB2Q99619 263 aa9.23□□□□□ -0.93
VPS39-209ENST00000568029 MTRQ99707 1265 aa9.23□□□□□ -0.93
VPS39-209ENST00000568029 TRIM34Q9BYJ4 488 aa9.23□□□□□ -0.93
VPS39-209ENST00000568029 ADH1BP00325 375 aa9.22□□□□□ -0.93
VPS39-209ENST00000568029 MMP16P51512 607 aa9.22□□□□□ -0.93
VPS39-209ENST00000568029 PTPN5P54829 565 aa9.22□□□□□ -0.93
VPS39-209ENST00000568029 COPS2P61201 443 aa9.22□□□□□ -0.93
VPS39-209ENST00000568029 PTPRNQ16849 979 aa9.22□□□□□ -0.93
VPS39-209ENST00000568029 WWC1Q8IX03 1113 aa9.22□□□□□ -0.93
VPS39-209ENST00000568029 TSC1Q92574 1164 aa9.22□□□□□ -0.93
VPS39-209ENST00000568029 HMX1Q9NP08 348 aaPredicted RBP9.22□□□□□ -0.93
VPS39-209ENST00000568029 HCSTQ9UBK5 93 aa9.22□□□□□ -0.93
VPS39-209ENST00000568029 DENND4BO75064 1496 aaPredicted RBP9.21□□□□□ -0.93
VPS39-209ENST00000568029 DXOO77932 396 aaKnown RBP9.21□□□□□ -0.94
VPS39-209ENST00000568029 FAM160A2Q8N612 972 aaPredicted RBP9.21□□□□□ -0.94
VPS39-209ENST00000568029 LRRN4Q8WUT4 740 aa9.21□□□□□ -0.94
VPS39-209ENST00000568029 EFCAB5A4FU69 1503 aa9.21□□□□□ -0.94
VPS39-209ENST00000568029 C3P01024 1663 aa9.2□□□□□ -0.94
VPS39-209ENST00000568029 PER1O15534 1290 aaPredicted RBP9.2□□□□□ -0.94
VPS39-209ENST00000568029 GDPD2Q9HCC8 539 aa9.2□□□□□ -0.94
VPS39-209ENST00000568029 FHOD3Q2V2M9 1422 aa9.2□□□□□ -0.94
VPS39-209ENST00000568029 AKNAQ7Z591 1439 aa9.2□□□□□ -0.94
VPS39-209ENST00000568029 RAPGEF6Q8TEU7 1601 aa9.2□□□□□ -0.94
VPS39-209ENST00000568029 PNMA1Q8ND90 353 aa9.19□□□□□ -0.94
VPS39-209ENST00000568029 TBC1D2BQ9UPU7 963 aa9.19□□□□□ -0.94
VPS39-209ENST00000568029 PHLDB1Q86UU1 1377 aa9.19□□□□□ -0.94
VPS39-209ENST00000568029 GOLGA3Q08378 1498 aa9.19□□□□□ -0.94
VPS39-209ENST00000568029 GPR37L1O60883 481 aa9.18□□□□□ -0.94
VPS39-209ENST00000568029 F12P00748 615 aaPredicted RBP9.18□□□□□ -0.94
VPS39-209ENST00000568029 POGZQ7Z3K3 1410 aa9.18□□□□□ -0.94
VPS39-209ENST00000568029 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.18□□□□□ -0.94
VPS39-209ENST00000568029 CFAP74Q9C0B2 1584 aa9.18□□□□□ -0.94
VPS39-209ENST00000568029 NUP153P49790 1475 aaKnown RBP9.17□□□□□ -0.94
VPS39-209ENST00000568029 IQSEC2Q5JU85 1478 aa9.17□□□□□ -0.94
VPS39-209ENST00000568029 EEA1Q15075 1411 aa9.17□□□□□ -0.94
VPS39-209ENST00000568029 UHRF1BP1Q6BDS2 1440 aa9.17□□□□□ -0.94
VPS39-209ENST00000568029 ITGBL1O95965 494 aaPredicted RBP9.17□□□□□ -0.94
VPS39-209ENST00000568029 PTPRTO14522 1441 aa9.16□□□□□ -0.94
VPS39-209ENST00000568029 ZC3H4Q9UPT8 1303 aaKnown RBP9.16□□□□□ -0.94
VPS39-209ENST00000568029 CCNYL3P0C7X3 344 aa9.16□□□□□ -0.94
VPS39-209ENST00000568029 WASHC4Q2M389 1173 aa9.16□□□□□ -0.94
VPS39-209ENST00000568029 SAMD9Q5K651 1589 aa9.16□□□□□ -0.94
VPS39-209ENST00000568029 TLL1O43897 1013 aa9.15□□□□□ -0.94
VPS39-209ENST00000568029 ABL2P42684 1182 aa9.15□□□□□ -0.94
VPS39-209ENST00000568029 ZNF516Q92618 1163 aa9.15□□□□□ -0.94
VPS39-209ENST00000568029 EVA1BQ9NVM1 165 aa9.15□□□□□ -0.94
VPS39-209ENST00000568029 NCOA1Q15788 1441 aa9.14□□□□□ -0.95
VPS39-209ENST00000568029 IRF5Q13568 498 aa9.14□□□□□ -0.95
VPS39-209ENST00000568029 NR6A1Q15406 480 aa9.14□□□□□ -0.95
VPS39-209ENST00000568029 PCGF6Q9BYE7 350 aa9.14□□□□□ -0.95
VPS39-209ENST00000568029 SLC6A16Q9GZN6 736 aa9.14□□□□□ -0.95
VPS39-209ENST00000568029 ZNF330Q9Y3S2 320 aaPredicted RBP9.14□□□□□ -0.95
VPS39-209ENST00000568029 ZNF335Q9H4Z2 1342 aaPredicted RBP9.13□□□□□ -0.95
VPS39-209ENST00000568029 TRIM26Q12899 539 aaPredicted RBP9.13□□□□□ -0.95
VPS39-209ENST00000568029 EPS8L1Q8TE68 723 aa9.13□□□□□ -0.95
VPS39-209ENST00000568029 NUDT12Q9BQG2 462 aa9.13□□□□□ -0.95
VPS39-209ENST00000568029 C9orf84Q5VXU9 1444 aa9.13□□□□□ -0.95
VPS39-209ENST00000568029 CAMSAP1Q5T5Y3 1602 aa9.13□□□□□ -0.95
VPS39-209ENST00000568029 ABCA6Q8N139 1617 aa9.13□□□□□ -0.95
VPS39-209ENST00000568029 KCNC4Q03721 635 aa9.12□□□□□ -0.95
VPS39-209ENST00000568029 KCNH2Q12809 1159 aa9.12□□□□□ -0.95
VPS39-209ENST00000568029 ARMC2Q8NEN0 867 aa9.12□□□□□ -0.95
VPS39-209ENST00000568029 GPKOWQ92917 476 aaPredicted RBP eCLIP9.12□□□□□ -0.95
VPS39-209ENST00000568029 PRDM9Q9NQV7 894 aa9.12□□□□□ -0.95
VPS39-209ENST00000568029 DIP2CQ9Y2E4 1556 aa9.12□□□□□ -0.95
VPS39-209ENST00000568029 UBAP1LF5GYI3 381 aa9.11□□□□□ -0.95
VPS39-209ENST00000568029 C1orf115Q9H7X2 142 aa9.11□□□□□ -0.95
VPS39-209ENST00000568029 FKBPLQ9UIM3 349 aa9.11□□□□□ -0.95
VPS39-209ENST00000568029 ALKQ9UM73 1620 aa9.11□□□□□ -0.95
VPS39-209ENST00000568029 ATP10AO60312 1499 aa9.1□□□□□ -0.95
VPS39-209ENST00000568029 MAGI2Q86UL8 1455 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms