RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	RTL5	Q5HYW3	569 aa	Predicted RBP	7.97	□□□□□ -1.13
CLN3-223	ENST00000566472	SSH1	Q8WYL5	1049 aa		7.97	□□□□□ -1.13
CLN3-223	ENST00000566472	ARHGAP45	Q92619	1136 aa		7.97	□□□□□ -1.13
CLN3-223	ENST00000566472	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	7.97	□□□□□ -1.13
CLN3-223	ENST00000566472	TTC21B	Q7Z4L5	1316 aa		7.97	□□□□□ -1.13
CLN3-223	ENST00000566472	PTPRU	Q92729	1446 aa		7.96	□□□□□ -1.13
CLN3-223	ENST00000566472	ZNF853	P0CG23	659 aa		7.96	□□□□□ -1.14
CLN3-223	ENST00000566472	TRIM27	P14373	513 aa		7.96	□□□□□ -1.14
CLN3-223	ENST00000566472	HAP1	P54257	671 aa	Predicted RBP	7.96	□□□□□ -1.14
CLN3-223	ENST00000566472	AEBP2	Q6ZN18	517 aa	Predicted RBP	7.96	□□□□□ -1.14
CLN3-223	ENST00000566472	SKAP1	Q86WV1	359 aa		7.96	□□□□□ -1.14
CLN3-223	ENST00000566472	BCL2L13	Q9BXK5	485 aa		7.96	□□□□□ -1.14
CLN3-223	ENST00000566472	SENP3	Q9H4L4	574 aa	Predicted RBP	7.96	□□□□□ -1.14
CLN3-223	ENST00000566472	PCDHB15	Q9Y5E8	787 aa		7.96	□□□□□ -1.14
CLN3-223	ENST00000566472	EMILIN1	Q9Y6C2	1016 aa		7.96	□□□□□ -1.14
CLN3-223	ENST00000566472	KIF24	Q5T7B8	1368 aa		7.96	□□□□□ -1.14
CLN3-223	ENST00000566472	XRN1	Q8IZH2	1706 aa	Known RBP	7.95	□□□□□ -1.14
CLN3-223	ENST00000566472	PDZRN3	Q9UPQ7	1066 aa		7.95	□□□□□ -1.14
CLN3-223	ENST00000566472	TNN	Q9UQP3	1299 aa		7.95	□□□□□ -1.14
CLN3-223	ENST00000566472	ARHGEF10	O15013	1369 aa		7.95	□□□□□ -1.14
CLN3-223	ENST00000566472	LTK	P29376	864 aa		7.94	□□□□□ -1.14
CLN3-223	ENST00000566472	SMC5	Q8IY18	1101 aa		7.94	□□□□□ -1.14
CLN3-223	ENST00000566472	THEMIS	Q8N1K5	641 aa	Predicted RBP	7.94	□□□□□ -1.14
CLN3-223	ENST00000566472	CFAP44	Q96MT7	982 aa		7.94	□□□□□ -1.14
CLN3-223	ENST00000566472	DAXX	Q9UER7	740 aa	Predicted RBP	7.94	□□□□□ -1.14
CLN3-223	ENST00000566472	NOB1	Q9ULX3	412 aa	Known RBP	7.94	□□□□□ -1.14
CLN3-223	ENST00000566472	USP54	Q70EL1	1684 aa		7.94	□□□□□ -1.14
CLN3-223	ENST00000566472	ACE	P12821	1306 aa		7.94	□□□□□ -1.14
CLN3-223	ENST00000566472	RGPD1	P0DJD0	1748 aa		7.94	□□□□□ -1.14
CLN3-223	ENST00000566472	FER1L4	A9Z1Z3	1794 aa		7.94	□□□□□ -1.14
CLN3-223	ENST00000566472	MAP2	P11137	1827 aa	Known RBP	7.94	□□□□□ -1.14
CLN3-223	ENST00000566472	VAMP4	O75379	141 aa		7.93	□□□□□ -1.14
CLN3-223	ENST00000566472	ITPRIP	Q8IWB1	547 aa		7.93	□□□□□ -1.14
CLN3-223	ENST00000566472	MRPL50	Q8N5N7	158 aa	Known RBP	7.93	□□□□□ -1.14
CLN3-223	ENST00000566472	PHACTR3	Q96KR7	559 aa		7.93	□□□□□ -1.14
CLN3-223	ENST00000566472	API5	Q9BZZ5	524 aa	Known RBP	7.93	□□□□□ -1.14
CLN3-223	ENST00000566472	UPF2	Q9HAU5	1272 aa	Known RBP	7.93	□□□□□ -1.14
CLN3-223	ENST00000566472	ZBTB40	Q9NUA8	1239 aa		7.93	□□□□□ -1.14
CLN3-223	ENST00000566472	SBNO1	A3KN83	1393 aa		7.93	□□□□□ -1.14
CLN3-223	ENST00000566472	HMOX1	P09601	288 aa		7.92	□□□□□ -1.14
CLN3-223	ENST00000566472	EIF4A2	Q14240	407 aa	Known RBP	7.92	□□□□□ -1.14
CLN3-223	ENST00000566472	TMEM57	Q8N5G2	664 aa		7.92	□□□□□ -1.14
CLN3-223	ENST00000566472	ZRANB1	Q9UGI0	708 aa		7.92	□□□□□ -1.14
CLN3-223	ENST00000566472	AMOTL2	Q9Y2J4	779 aa		7.92	□□□□□ -1.14
CLN3-223	ENST00000566472	ABCC4	O15439	1325 aa		7.92	□□□□□ -1.14
CLN3-223	ENST00000566472	USP19	O94966	1318 aa		7.92	□□□□□ -1.14
CLN3-223	ENST00000566472	KIAA0232	Q92628	1395 aa		7.92	□□□□□ -1.14
CLN3-223	ENST00000566472	BECN1	Q14457	450 aa		7.91	□□□□□ -1.14
CLN3-223	ENST00000566472	RRS1	Q15050	365 aa	Known RBP	7.91	□□□□□ -1.14
CLN3-223	ENST00000566472	MBIP	Q9NS73	344 aa		7.91	□□□□□ -1.14
CLN3-223	ENST00000566472	NCKAP5L	Q9HCH0	1330 aa		7.91	□□□□□ -1.14
CLN3-223	ENST00000566472	FLT4	P35916	1363 aa		7.91	□□□□□ -1.14
CLN3-223	ENST00000566472	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	7.91	□□□□□ -1.14
CLN3-223	ENST00000566472	PEAK1	Q9H792	1746 aa		7.91	□□□□□ -1.14
CLN3-223	ENST00000566472	KDR	P35968	1356 aa		7.9	□□□□□ -1.14
CLN3-223	ENST00000566472	FBLN1	P23142	703 aa		7.9	□□□□□ -1.14
CLN3-223	ENST00000566472	NBR1	Q14596	966 aa		7.9	□□□□□ -1.14
CLN3-223	ENST00000566472	TWISTNB	Q3B726	338 aa	Predicted RBP	7.9	□□□□□ -1.14
CLN3-223	ENST00000566472	GCC1	Q96CN9	775 aa		7.9	□□□□□ -1.14
CLN3-223	ENST00000566472	FMN2	Q9NZ56	1722 aa		7.89	□□□□□ -1.15
CLN3-223	ENST00000566472	ZNF142	P52746	1687 aa	Predicted RBP	7.89	□□□□□ -1.15
CLN3-223	ENST00000566472	RTL1	A6NKG5	1358 aa		7.89	□□□□□ -1.15
CLN3-223	ENST00000566472	HTATSF1	O43719	755 aa	Known RBP	7.89	□□□□□ -1.15
CLN3-223	ENST00000566472	EIF5B	O60841	1220 aa	Known RBP	7.89	□□□□□ -1.15
CLN3-223	ENST00000566472	NUCB1	Q02818	461 aa		7.89	□□□□□ -1.15
CLN3-223	ENST00000566472	TBC1D32	Q96NH3	1257 aa		7.89	□□□□□ -1.15
CLN3-223	ENST00000566472	SLC26A8	Q96RN1	970 aa		7.89	□□□□□ -1.15
CLN3-223	ENST00000566472	LAS1L	Q9Y4W2	734 aa	Known RBP	7.89	□□□□□ -1.15
CLN3-223	ENST00000566472	CRB1	P82279	1406 aa		7.88	□□□□□ -1.15
CLN3-223	ENST00000566472	SOS1	Q07889	1333 aa	Predicted RBP	7.88	□□□□□ -1.15
CLN3-223	ENST00000566472	MAP3K19	Q56UN5	1328 aa		7.88	□□□□□ -1.15
CLN3-223	ENST00000566472	IGSF1	Q8N6C5	1336 aa		7.88	□□□□□ -1.15
CLN3-223	ENST00000566472	CHL1	O00533	1208 aa		7.88	□□□□□ -1.15
CLN3-223	ENST00000566472	ZBTB7B	O15156	539 aa	Predicted RBP	7.88	□□□□□ -1.15
CLN3-223	ENST00000566472	DEK	P35659	375 aa	Known RBP	7.88	□□□□□ -1.15
CLN3-223	ENST00000566472	CEBPA	P49715	358 aa	Predicted RBP	7.88	□□□□□ -1.15
CLN3-223	ENST00000566472	SULT6B1	Q6IMI4	303 aa		7.88	□□□□□ -1.15
CLN3-223	ENST00000566472	GAS2L2	Q8NHY3	880 aa		7.88	□□□□□ -1.15
CLN3-223	ENST00000566472	THUMPD2	Q9BTF0	503 aa	Known RBP	7.88	□□□□□ -1.15
CLN3-223	ENST00000566472	PIK3C2A	O00443	1686 aa		7.88	□□□□□ -1.15
CLN3-223	ENST00000566472	PTPRC	P08575	1304 aa		7.87	□□□□□ -1.15
CLN3-223	ENST00000566472	PLPPR3	Q6T4P5	718 aa		7.87	□□□□□ -1.15
CLN3-223	ENST00000566472	TSPYL6	Q8N831	410 aa		7.87	□□□□□ -1.15
CLN3-223	ENST00000566472	NGDN	Q8NEJ9	315 aa	Known RBP	7.87	□□□□□ -1.15
CLN3-223	ENST00000566472	LRRC37A3	O60309	1634 aa		7.87	□□□□□ -1.15
CLN3-223	ENST00000566472	DLG5	Q8TDM6	1919 aa		7.87	□□□□□ -1.15
CLN3-223	ENST00000566472	BMP2KL	Q5H9B9	411 aa		7.86	□□□□□ -1.15
CLN3-223	ENST00000566472	INTS3	Q68E01	1043 aa	Known RBP	7.86	□□□□□ -1.15
CLN3-223	ENST00000566472	CHD1L	Q86WJ1	897 aa		7.86	□□□□□ -1.15
CLN3-223	ENST00000566472	AEBP1	Q8IUX7	1158 aa		7.86	□□□□□ -1.15
CLN3-223	ENST00000566472	C8orf58	Q8NAV2	365 aa		7.86	□□□□□ -1.15
CLN3-223	ENST00000566472	BABAM1	Q9NWV8	329 aa		7.86	□□□□□ -1.15
CLN3-223	ENST00000566472	RGS12	O14924	1447 aa		7.86	□□□□□ -1.15
CLN3-223	ENST00000566472	SEC24B	O95487	1268 aa		7.85	□□□□□ -1.15
CLN3-223	ENST00000566472	HSP90AB2P	Q58FF8	381 aa		7.85	□□□□□ -1.15
CLN3-223	ENST00000566472	ADGRL3	Q9HAR2	1447 aa		7.85	□□□□□ -1.15
CLN3-223	ENST00000566472	FAM83G	A6ND36	823 aa		7.84	□□□□□ -1.15
CLN3-223	ENST00000566472	KCNA6	P17658	529 aa		7.84	□□□□□ -1.15
CLN3-223	ENST00000566472	AMPH	P49418	695 aa		7.84	□□□□□ -1.15
CLN3-223	ENST00000566472	NFKBIB	Q15653	356 aa		7.84	□□□□□ -1.15

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