RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 PPP6R1Q9UPN7 881 aa20.23■□□□□ 0.83
LINC00554-201ENST00000564841 MPNDQ8N594 471 aa20.22■□□□□ 0.83
LINC00554-201ENST00000564841 MCTP1Q6DN14 999 aa20.22■□□□□ 0.83
LINC00554-201ENST00000564841 A2ML1A8K2U0 1454 aa20.22■□□□□ 0.83
LINC00554-201ENST00000564841 DZIP1LQ8IYY4 767 aaKnown RBP20.21■□□□□ 0.83
LINC00554-201ENST00000564841 RBM27Q9P2N5 1060 aaKnown RBP20.21■□□□□ 0.83
LINC00554-201ENST00000564841 TULP4Q9NRJ4 1543 aa20.21■□□□□ 0.83
LINC00554-201ENST00000564841 A0A1W2PP64 1363 aa20.21■□□□□ 0.83
LINC00554-201ENST00000564841 BAG4O95429 457 aaKnown RBP20.21■□□□□ 0.83
LINC00554-201ENST00000564841 RBM25P49756 843 aaKnown RBP20.21■□□□□ 0.83
LINC00554-201ENST00000564841 SNX21Q969T3 373 aa20.21■□□□□ 0.83
LINC00554-201ENST00000564841 PKP1Q13835 747 aa20.2■□□□□ 0.82
LINC00554-201ENST00000564841 RUNDC1Q96C34 613 aa20.2■□□□□ 0.82
LINC00554-201ENST00000564841 PRIM1P49642 420 aaKnown RBP20.19■□□□□ 0.82
LINC00554-201ENST00000564841 METP08581 1390 aa20.19■□□□□ 0.82
LINC00554-201ENST00000564841 TNRQ92752 1358 aa20.19■□□□□ 0.82
LINC00554-201ENST00000564841 TERF2IPQ9NYB0 399 aa20.19■□□□□ 0.82
LINC00554-201ENST00000564841 NOL7Q9UMY1 257 aaKnown RBP20.19■□□□□ 0.82
LINC00554-201ENST00000564841 AK9Q5TCS8 1911 aa20.18■□□□□ 0.82
LINC00554-201ENST00000564841 ZKSCAN2Q63HK3 967 aa20.18■□□□□ 0.82
LINC00554-201ENST00000564841 FAM177BA6PVY3 158 aa20.18■□□□□ 0.82
LINC00554-201ENST00000564841 CIZ1Q9ULV3 898 aaPredicted RBP20.18■□□□□ 0.82
LINC00554-201ENST00000564841 TRIM27P14373 513 aa20.17■□□□□ 0.82
LINC00554-201ENST00000564841 KLHL40Q2TBA0 621 aa20.17■□□□□ 0.82
LINC00554-201ENST00000564841 ZSCAN23Q3MJ62 389 aa20.17■□□□□ 0.82
LINC00554-201ENST00000564841 ALKQ9UM73 1620 aa20.17■□□□□ 0.82
LINC00554-201ENST00000564841 HDGFL2Q7Z4V5 671 aaPredicted RBP20.17■□□□□ 0.82
LINC00554-201ENST00000564841 AGLP35573 1532 aa20.17■□□□□ 0.82
LINC00554-201ENST00000564841 LTKP29376 864 aa20.16■□□□□ 0.82
LINC00554-201ENST00000564841 ARHGEF40Q8TER5 1519 aa20.16■□□□□ 0.82
LINC00554-201ENST00000564841 ARHGEF28Q8N1W1 1705 aaKnown RBP20.16■□□□□ 0.82
LINC00554-201ENST00000564841 K7ELQ4 463 aaPredicted RBP20.16■□□□□ 0.82
LINC00554-201ENST00000564841 CFAP53Q96M91 514 aa20.16■□□□□ 0.82
LINC00554-201ENST00000564841 SMC4Q9NTJ3 1288 aa20.16■□□□□ 0.82
LINC00554-201ENST00000564841 ANKRD36BQ8N2N9 1353 aa20.16■□□□□ 0.82
LINC00554-201ENST00000564841 NPC1L1Q9UHC9 1359 aa20.16■□□□□ 0.82
LINC00554-201ENST00000564841 ZFYVE9O95405 1425 aa20.15■□□□□ 0.82
LINC00554-201ENST00000564841 FYB1O15117 783 aa20.15■□□□□ 0.82
LINC00554-201ENST00000564841 SOX12O15370 315 aa20.15■□□□□ 0.82
LINC00554-201ENST00000564841 RNF214Q8ND24 703 aa20.15■□□□□ 0.82
LINC00554-201ENST00000564841 PTPRMP28827 1452 aa20.14■□□□□ 0.82
LINC00554-201ENST00000564841 GOLGA6L22H0YM25 854 aa20.14■□□□□ 0.82
LINC00554-201ENST00000564841 SMAP1Q8IYB5 467 aaPredicted RBP20.14■□□□□ 0.82
LINC00554-201ENST00000564841 MAP7D2Q96T17 732 aa20.14■□□□□ 0.81
LINC00554-201ENST00000564841 ZRANB1Q9UGI0 708 aa20.14■□□□□ 0.81
LINC00554-201ENST00000564841 MYO3AQ8NEV4 1616 aa20.14■□□□□ 0.81
LINC00554-201ENST00000564841 ZNF500O60304 480 aaPredicted RBP20.13■□□□□ 0.81
LINC00554-201ENST00000564841 EXOSC9Q06265 439 aaKnown RBP20.13■□□□□ 0.81
LINC00554-201ENST00000564841 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.13■□□□□ 0.81
LINC00554-201ENST00000564841 TERF1P54274 439 aa20.13■□□□□ 0.81
LINC00554-201ENST00000564841 FOXD4L5Q5VV16 416 aaPredicted RBP20.13■□□□□ 0.81
LINC00554-201ENST00000564841 TMEM57Q8N5G2 664 aa20.13■□□□□ 0.81
LINC00554-201ENST00000564841 FOXD4L4Q8WXT5 416 aaPredicted RBP20.13■□□□□ 0.81
LINC00554-201ENST00000564841 HDGFP51858 240 aaKnown RBP20.12■□□□□ 0.81
LINC00554-201ENST00000564841 SSH1Q8WYL5 1049 aa20.12■□□□□ 0.81
LINC00554-201ENST00000564841 ZKSCAN5Q9Y2L8 839 aa20.11■□□□□ 0.81
LINC00554-201ENST00000564841 PRPF40AO75400 957 aaKnown RBP20.11■□□□□ 0.81
LINC00554-201ENST00000564841 HDAC1Q13547 482 aaPredicted RBP20.11■□□□□ 0.81
LINC00554-201ENST00000564841 NOB1Q9ULX3 412 aaKnown RBP20.11■□□□□ 0.81
LINC00554-201ENST00000564841 CBX1P83916 185 aa20.11■□□□□ 0.81
LINC00554-201ENST00000564841 NSFL1CQ9UNZ2 370 aaKnown RBP20.11■□□□□ 0.81
LINC00554-201ENST00000564841 FGD1P98174 961 aa20.1■□□□□ 0.81
LINC00554-201ENST00000564841 RBM33Q96EV2 1170 aaKnown RBP20.1■□□□□ 0.81
LINC00554-201ENST00000564841 C1orf115Q9H7X2 142 aa20.1■□□□□ 0.81
LINC00554-201ENST00000564841 LMBRD1Q9NUN5 540 aa20.1■□□□□ 0.81
LINC00554-201ENST00000564841 ATAD2Q6PL18 1390 aa20.09■□□□□ 0.81
LINC00554-201ENST00000564841 ELL2O00472 640 aaPredicted RBP20.09■□□□□ 0.81
LINC00554-201ENST00000564841 ZSCAN20P17040 1043 aaPredicted RBP20.09■□□□□ 0.81
LINC00554-201ENST00000564841 PDLIM2Q96JY6 352 aa20.09■□□□□ 0.81
LINC00554-201ENST00000564841 ZNF445P59923 1031 aa20.09■□□□□ 0.81
LINC00554-201ENST00000564841 TBC1D9Q6ZT07 1266 aa20.09■□□□□ 0.81
LINC00554-201ENST00000564841 DYNC1I1O14576 645 aa20.08■□□□□ 0.81
LINC00554-201ENST00000564841 ANKRD45Q5TZF3 282 aa20.08■□□□□ 0.81
LINC00554-201ENST00000564841 NME9Q86XW9 330 aa20.08■□□□□ 0.81
LINC00554-201ENST00000564841 SPATA31D1Q6ZQQ2 1576 aa20.08■□□□□ 0.81
LINC00554-201ENST00000564841 POLR3AO14802 1390 aaPredicted RBP20.08■□□□□ 0.81
LINC00554-201ENST00000564841 WASLO00401 505 aaPredicted RBP20.08■□□□□ 0.8
LINC00554-201ENST00000564841 GPT2Q8TD30 523 aa20.08■□□□□ 0.8
LINC00554-201ENST00000564841 SYCE3A1L190 88 aa20.08■□□□□ 0.8
LINC00554-201ENST00000564841 NUDT16Q96DE0 195 aaKnown RBP20.08■□□□□ 0.8
LINC00554-201ENST00000564841 NUCB1Q02818 461 aa20.07■□□□□ 0.8
LINC00554-201ENST00000564841 CHD1LQ86WJ1 897 aa20.07■□□□□ 0.8
LINC00554-201ENST00000564841 WDR63Q8IWG1 891 aa20.07■□□□□ 0.8
LINC00554-201ENST00000564841 THUMPD2Q9BTF0 503 aaKnown RBP20.07■□□□□ 0.8
LINC00554-201ENST00000564841 PHF23Q9BUL5 403 aaPredicted RBP20.07■□□□□ 0.8
LINC00554-201ENST00000564841 EID1Q9Y6B2 187 aa20.07■□□□□ 0.8
LINC00554-201ENST00000564841 ZNF830Q96NB3 372 aaPredicted RBP20.07■□□□□ 0.8
LINC00554-201ENST00000564841 IGSF3O75054 1194 aa20.06■□□□□ 0.8
LINC00554-201ENST00000564841 NGEFQ8N5V2 710 aa20.06■□□□□ 0.8
LINC00554-201ENST00000564841 REREQ9P2R6 1566 aa20.06■□□□□ 0.8
LINC00554-201ENST00000564841 TMEM2Q9UHN6 1383 aa20.06■□□□□ 0.8
LINC00554-201ENST00000564841 C17orf53Q8N3J3 647 aaPredicted RBP20.05■□□□□ 0.8
LINC00554-201ENST00000564841 SASS6Q6UVJ0 657 aa20.05■□□□□ 0.8
LINC00554-201ENST00000564841 DDX19BQ9UMR2 479 aa20.05■□□□□ 0.8
LINC00554-201ENST00000564841 DNTTIP2Q5QJE6 756 aaKnown RBP20.05■□□□□ 0.8
LINC00554-201ENST00000564841 ATF7IPQ6VMQ6 1270 aa20.05■□□□□ 0.8
LINC00554-201ENST00000564841 ZGPATQ8N5A5 531 aaKnown RBP20.05■□□□□ 0.8
LINC00554-201ENST00000564841 ZBTB40Q9NUA8 1239 aa20.05■□□□□ 0.8
LINC00554-201ENST00000564841 DMTNQ08495 405 aa20.04■□□□□ 0.8
LINC00554-201ENST00000564841 CCDC94Q9BW85 323 aaPredicted RBP20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms