RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 ZSCAN30Q86W11 494 aa12.79□□□□□ -0.36
RNF40-204ENST00000563683 SMC5Q8IY18 1101 aa12.79□□□□□ -0.36
RNF40-204ENST00000563683 TNPO1Q92973 898 aaKnown RBP12.79□□□□□ -0.36
RNF40-204ENST00000563683 NCKAP5LQ9HCH0 1330 aa12.79□□□□□ -0.36
RNF40-204ENST00000563683 ATP7AQ04656 1500 aa12.78□□□□□ -0.36
RNF40-204ENST00000563683 IQGAP3Q86VI3 1631 aa12.78□□□□□ -0.36
RNF40-204ENST00000563683 ZNF428Q96B54 188 aa12.78□□□□□ -0.36
RNF40-204ENST00000563683 ERCC6L2Q5T890 1561 aa12.78□□□□□ -0.36
RNF40-204ENST00000563683 NCOA3Q9Y6Q9 1424 aa12.78□□□□□ -0.36
RNF40-204ENST00000563683 NASPP49321 788 aaPredicted RBP12.78□□□□□ -0.36
RNF40-204ENST00000563683 POLKQ9UBT6 870 aa12.78□□□□□ -0.36
RNF40-204ENST00000563683 A0A1W2PP64 1363 aa12.77□□□□□ -0.36
RNF40-204ENST00000563683 NSD2O96028 1365 aa12.77□□□□□ -0.36
RNF40-204ENST00000563683 RBM25P49756 843 aaKnown RBP12.77□□□□□ -0.36
RNF40-204ENST00000563683 HDAC1Q13547 482 aaPredicted RBP12.77□□□□□ -0.36
RNF40-204ENST00000563683 RAB3GAP1Q15042 981 aa12.77□□□□□ -0.36
RNF40-204ENST00000563683 CCDC27Q2M243 656 aa12.77□□□□□ -0.36
RNF40-204ENST00000563683 PHACTR3Q96KR7 559 aa12.77□□□□□ -0.36
RNF40-204ENST00000563683 C9orf78Q9NZ63 289 aaPredicted RBP12.77□□□□□ -0.36
RNF40-204ENST00000563683 CHMP3Q9Y3E7 222 aa12.77□□□□□ -0.36
RNF40-204ENST00000563683 IQGAP1P46940 1657 aa12.77□□□□□ -0.37
RNF40-204ENST00000563683 ALDH1L2Q3SY69 923 aa12.77□□□□□ -0.37
RNF40-204ENST00000563683 C1orf141Q5JVX7 400 aa12.77□□□□□ -0.37
RNF40-204ENST00000563683 CCDC9Q9Y3X0 531 aaKnown RBP12.77□□□□□ -0.37
RNF40-204ENST00000563683 OFD1O75665 1012 aa12.77□□□□□ -0.37
RNF40-204ENST00000563683 DDIT3P35638 169 aa12.77□□□□□ -0.37
RNF40-204ENST00000563683 ABCC11Q96J66 1382 aa12.77□□□□□ -0.37
RNF40-204ENST00000563683 PPP1R9BQ96SB3 815 aa12.77□□□□□ -0.37
RNF40-204ENST00000563683 UGGT1Q9NYU2 1555 aa12.76□□□□□ -0.37
RNF40-204ENST00000563683 MBIPQ9NS73 344 aa12.76□□□□□ -0.37
RNF40-204ENST00000563683 GOLGA6L4A6NEF3 574 aa12.76□□□□□ -0.37
RNF40-204ENST00000563683 RBM33Q96EV2 1170 aaKnown RBP12.76□□□□□ -0.37
RNF40-204ENST00000563683 CHMP4AQ9BY43 222 aa12.76□□□□□ -0.37
RNF40-204ENST00000563683 IFT57Q9NWB7 429 aa12.76□□□□□ -0.37
RNF40-204ENST00000563683 NCBP3Q53F19 620 aaKnown RBP12.75□□□□□ -0.37
RNF40-204ENST00000563683 GAS2L3Q86XJ1 694 aa12.75□□□□□ -0.37
RNF40-204ENST00000563683 GAS2L2Q8NHY3 880 aa12.75□□□□□ -0.37
RNF40-204ENST00000563683 PTPRTO14522 1441 aa12.75□□□□□ -0.37
RNF40-204ENST00000563683 SMARCA5O60264 1052 aaPredicted RBP12.75□□□□□ -0.37
RNF40-204ENST00000563683 MCTP1Q6DN14 999 aa12.75□□□□□ -0.37
RNF40-204ENST00000563683 TSPYL6Q8N831 410 aa12.75□□□□□ -0.37
RNF40-204ENST00000563683 KDM5AP29375 1690 aaKnown RBP12.75□□□□□ -0.37
RNF40-204ENST00000563683 F6X3S4 739 aa12.75□□□□□ -0.37
RNF40-204ENST00000563683 UBTFL1P0CB47 393 aaPredicted RBP12.75□□□□□ -0.37
RNF40-204ENST00000563683 AIMP1Q12904 312 aaKnown RBP12.74□□□□□ -0.37
RNF40-204ENST00000563683 HS1BP3Q53T59 392 aa12.74□□□□□ -0.37
RNF40-204ENST00000563683 MADDQ8WXG6 1647 aa12.74□□□□□ -0.37
RNF40-204ENST00000563683 SURF6O75683 361 aaKnown RBP12.74□□□□□ -0.37
RNF40-204ENST00000563683 CCDC30Q5VVM6 783 aa12.74□□□□□ -0.37
RNF40-204ENST00000563683 MTERF4Q7Z6M4 381 aaKnown RBP12.74□□□□□ -0.37
RNF40-204ENST00000563683 HSP90AB2PQ58FF8 381 aa12.73□□□□□ -0.37
RNF40-204ENST00000563683 ESCO1Q5FWF5 840 aa12.73□□□□□ -0.37
RNF40-204ENST00000563683 EXOC6BQ9Y2D4 811 aa12.73□□□□□ -0.37
RNF40-204ENST00000563683 PREX2Q70Z35 1606 aa12.73□□□□□ -0.37
RNF40-204ENST00000563683 IBTKQ9P2D0 1353 aaPredicted RBP12.73□□□□□ -0.37
RNF40-204ENST00000563683 AEBP1Q8IUX7 1158 aa12.73□□□□□ -0.37
RNF40-204ENST00000563683 PHF23Q9BUL5 403 aaPredicted RBP12.73□□□□□ -0.37
RNF40-204ENST00000563683 NEK4P51957 841 aa12.73□□□□□ -0.37
RNF40-204ENST00000563683 HDGFL1Q5TGJ6 251 aa12.73□□□□□ -0.37
RNF40-204ENST00000563683 C8orf58Q8NAV2 365 aa12.73□□□□□ -0.37
RNF40-204ENST00000563683 NPATQ14207 1427 aa12.73□□□□□ -0.37
RNF40-204ENST00000563683 GNAI2P04899 355 aa12.73□□□□□ -0.37
RNF40-204ENST00000563683 GPATCH3Q96I76 525 aa12.73□□□□□ -0.37
RNF40-204ENST00000563683 GNAI3P08754 354 aa12.72□□□□□ -0.37
RNF40-204ENST00000563683 KRT24Q2M2I5 525 aa12.72□□□□□ -0.37
RNF40-204ENST00000563683 KLHL40Q2TBA0 621 aa12.72□□□□□ -0.37
RNF40-204ENST00000563683 TRIM35Q9UPQ4 493 aa12.72□□□□□ -0.37
RNF40-204ENST00000563683 THEMISQ8N1K5 641 aaPredicted RBP12.71□□□□□ -0.37
RNF40-204ENST00000563683 MYOM1P52179 1685 aa12.71□□□□□ -0.37
RNF40-204ENST00000563683 PUS7Q96PZ0 661 aaKnown RBP12.71□□□□□ -0.37
RNF40-204ENST00000563683 DIAPH3Q9NSV4 1193 aa12.71□□□□□ -0.37
RNF40-204ENST00000563683 AMOTL2Q9Y2J4 779 aa12.71□□□□□ -0.37
RNF40-204ENST00000563683 IL16Q14005 1332 aa12.71□□□□□ -0.38
RNF40-204ENST00000563683 K7ELQ4 463 aaPredicted RBP12.71□□□□□ -0.38
RNF40-204ENST00000563683 XPCQ01831 940 aaPredicted RBP12.71□□□□□ -0.38
RNF40-204ENST00000563683 ACEP12821 1306 aa12.71□□□□□ -0.38
RNF40-204ENST00000563683 USHBP1Q8N6Y0 703 aa12.7□□□□□ -0.38
RNF40-204ENST00000563683 IL1RAPL2Q9NP60 686 aa12.7□□□□□ -0.38
RNF40-204ENST00000563683 HDAC5Q9UQL6 1122 aa12.7□□□□□ -0.38
RNF40-204ENST00000563683 ERVK-7P63135 1459 aa12.7□□□□□ -0.38
RNF40-204ENST00000563683 CSPP1Q1MSJ5 1256 aa12.7□□□□□ -0.38
RNF40-204ENST00000563683 RPAP2Q8IXW5 612 aaPredicted RBP12.7□□□□□ -0.38
RNF40-204ENST00000563683 VAMP4O75379 141 aa12.7□□□□□ -0.38
RNF40-204ENST00000563683 NUCB2P80303 420 aa12.7□□□□□ -0.38
RNF40-204ENST00000563683 MAP4K4O95819 1239 aaPredicted RBP12.69□□□□□ -0.38
RNF40-204ENST00000563683 IFIT2P09913 472 aaKnown RBP12.69□□□□□ -0.38
RNF40-204ENST00000563683 CCT4P50991 539 aaKnown RBP12.69□□□□□ -0.38
RNF40-204ENST00000563683 RABEP1Q15276 862 aa12.68□□□□□ -0.38
RNF40-204ENST00000563683 CLEC17AQ6ZS10 378 aa12.68□□□□□ -0.38
RNF40-204ENST00000563683 ZBTB40Q9NUA8 1239 aa12.68□□□□□ -0.38
RNF40-204ENST00000563683 ABCC1P33527 1531 aa12.68□□□□□ -0.38
RNF40-204ENST00000563683 IQSEC2Q5JU85 1478 aa12.68□□□□□ -0.38
RNF40-204ENST00000563683 ZRSR1Q15695 479 aaKnown RBP12.68□□□□□ -0.38
RNF40-204ENST00000563683 TBC1D9Q6ZT07 1266 aa12.68□□□□□ -0.38
RNF40-204ENST00000563683 SYAP1Q96A49 352 aaPredicted RBP12.68□□□□□ -0.38
RNF40-204ENST00000563683 NLRP2Q9NX02 1062 aa12.68□□□□□ -0.38
RNF40-204ENST00000563683 FAM13BQ9NYF5 915 aa12.68□□□□□ -0.38
RNF40-204ENST00000563683 R3HCC1Q9Y3T6 440 aaKnown RBP12.68□□□□□ -0.38
RNF40-204ENST00000563683 NUCB1Q02818 461 aa12.67□□□□□ -0.38
RNF40-204ENST00000563683 BMP2KLQ5H9B9 411 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms