RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 FLT4P35916 1363 aa23.7■■□□□ 1.38
COMMD4-208ENST00000563220 RNF123Q5XPI4 1314 aa23.69■■□□□ 1.38
COMMD4-208ENST00000563220 PHACTR3Q96KR7 559 aa23.68■■□□□ 1.38
COMMD4-208ENST00000563220 RCAN3Q9UKA8 241 aa23.68■■□□□ 1.38
COMMD4-208ENST00000563220 E9PSI1 815 aa23.68■■□□□ 1.38
COMMD4-208ENST00000563220 LMOD2Q6P5Q4 547 aa23.68■■□□□ 1.38
COMMD4-208ENST00000563220 HOXC9P31274 260 aa23.67■■□□□ 1.38
COMMD4-208ENST00000563220 WDR63Q8IWG1 891 aa23.67■■□□□ 1.38
COMMD4-208ENST00000563220 TRIM35Q9UPQ4 493 aa23.66■■□□□ 1.38
COMMD4-208ENST00000563220 TRPM3Q9HCF6 1732 aaPredicted RBP23.66■■□□□ 1.38
COMMD4-208ENST00000563220 BRINP3Q76B58 766 aa23.66■■□□□ 1.38
COMMD4-208ENST00000563220 KCNH5Q8NCM2 988 aa23.66■■□□□ 1.38
COMMD4-208ENST00000563220 KIF24Q5T7B8 1368 aa23.65■■□□□ 1.38
COMMD4-208ENST00000563220 RIPK4P57078 832 aa23.65■■□□□ 1.38
COMMD4-208ENST00000563220 AEBP1Q8IUX7 1158 aa23.65■■□□□ 1.38
COMMD4-208ENST00000563220 SLAIN2Q9P270 581 aa23.65■■□□□ 1.38
COMMD4-208ENST00000563220 NPHP3Q7Z494 1330 aa23.65■■□□□ 1.38
COMMD4-208ENST00000563220 SULT6B1Q6IMI4 303 aa23.64■■□□□ 1.38
COMMD4-208ENST00000563220 GCP02774 474 aa23.64■■□□□ 1.37
COMMD4-208ENST00000563220 NFAT5O94916 1531 aa23.63■■□□□ 1.37
COMMD4-208ENST00000563220 PLEKHG5O94827 1062 aa23.63■■□□□ 1.37
COMMD4-208ENST00000563220 NEFMP07197 916 aa23.63■■□□□ 1.37
COMMD4-208ENST00000563220 USP19O94966 1318 aa23.63■■□□□ 1.37
COMMD4-208ENST00000563220 NFE2L2Q16236 605 aa23.61■■□□□ 1.37
COMMD4-208ENST00000563220 IP6K1Q92551 441 aa23.6■■□□□ 1.37
COMMD4-208ENST00000563220 EYA1Q99502 592 aa23.6■■□□□ 1.37
COMMD4-208ENST00000563220 SLIT3O75094 1523 aa23.59■■□□□ 1.37
COMMD4-208ENST00000563220 RTL1A6NKG5 1358 aa23.59■■□□□ 1.37
COMMD4-208ENST00000563220 ARHGEF10O15013 1369 aa23.58■■□□□ 1.37
COMMD4-208ENST00000563220 ARHGEF25Q86VW2 580 aa23.58■■□□□ 1.37
COMMD4-208ENST00000563220 RGPD1P0DJD0 1748 aa23.58■■□□□ 1.36
COMMD4-208ENST00000563220 PXDNQ92626 1479 aa23.58■■□□□ 1.36
COMMD4-208ENST00000563220 IGSF1Q8N6C5 1336 aa23.57■■□□□ 1.36
COMMD4-208ENST00000563220 RRP1P56182 461 aaKnown RBP23.57■■□□□ 1.36
COMMD4-208ENST00000563220 LTV1Q96GA3 475 aaPredicted RBP23.57■■□□□ 1.36
COMMD4-208ENST00000563220 ZBTB7CA1YPR0 619 aa23.56■■□□□ 1.36
COMMD4-208ENST00000563220 ALS2Q96Q42 1657 aa23.56■■□□□ 1.36
COMMD4-208ENST00000563220 SPATA31A3Q5VYP0 1347 aa23.56■■□□□ 1.36
COMMD4-208ENST00000563220 TNS3Q68CZ2 1445 aa23.54■■□□□ 1.36
COMMD4-208ENST00000563220 KDRP35968 1356 aa23.54■■□□□ 1.36
COMMD4-208ENST00000563220 ERICH6BQ5W0A0 696 aa23.53■■□□□ 1.36
COMMD4-208ENST00000563220 MED1Q15648 1581 aaPredicted RBP23.53■■□□□ 1.36
COMMD4-208ENST00000563220 IL16Q14005 1332 aa23.52■■□□□ 1.36
COMMD4-208ENST00000563220 MYH16Q9H6N6 1097 aa23.52■■□□□ 1.36
COMMD4-208ENST00000563220 LTN1O94822 1766 aa23.52■■□□□ 1.36
COMMD4-208ENST00000563220 SOS2Q07890 1332 aaPredicted RBP23.52■■□□□ 1.36
COMMD4-208ENST00000563220 ZC3H6P61129 1189 aaKnown RBP23.51■■□□□ 1.35
COMMD4-208ENST00000563220 CABLES1Q8TDN4 633 aa23.51■■□□□ 1.35
COMMD4-208ENST00000563220 PLIN1O60240 522 aa23.49■■□□□ 1.35
COMMD4-208ENST00000563220 THUMPD2Q9BTF0 503 aaKnown RBP23.49■■□□□ 1.35
COMMD4-208ENST00000563220 TSR2Q969E8 191 aaKnown RBP23.49■■□□□ 1.35
COMMD4-208ENST00000563220 AXIN2Q9Y2T1 843 aa23.49■■□□□ 1.35
COMMD4-208ENST00000563220 NBPF6Q5VWK0 638 aa23.48■■□□□ 1.35
COMMD4-208ENST00000563220 NBPF4Q96M43 638 aa23.48■■□□□ 1.35
COMMD4-208ENST00000563220 FANCIQ9NVI1 1328 aa23.48■■□□□ 1.35
COMMD4-208ENST00000563220 PHRF1Q9P1Y6 1649 aaKnown RBP23.48■■□□□ 1.35
COMMD4-208ENST00000563220 FAM83GA6ND36 823 aa23.47■■□□□ 1.35
COMMD4-208ENST00000563220 LTBP4Q8N2S1 1624 aa23.47■■□□□ 1.35
COMMD4-208ENST00000563220 USHBP1Q8N6Y0 703 aa23.47■■□□□ 1.35
COMMD4-208ENST00000563220 LMOD3Q0VAK6 560 aa23.46■■□□□ 1.35
COMMD4-208ENST00000563220 MTHFSDQ2M296 383 aaKnown RBP23.46■■□□□ 1.35
COMMD4-208ENST00000563220 DCTN1Q14203 1278 aa23.45■■□□□ 1.35
COMMD4-208ENST00000563220 LRRC59Q96AG4 307 aaKnown RBP23.45■■□□□ 1.34
COMMD4-208ENST00000563220 BCAR3O75815 825 aa23.44■■□□□ 1.34
COMMD4-208ENST00000563220 ANKRD24Q8TF21 1146 aa23.44■■□□□ 1.34
COMMD4-208ENST00000563220 EXOSC9Q06265 439 aaKnown RBP23.43■■□□□ 1.34
COMMD4-208ENST00000563220 PPP4R2Q9NY27 417 aa23.43■■□□□ 1.34
COMMD4-208ENST00000563220 CALD1Q05682 793 aaKnown RBP23.42■■□□□ 1.34
COMMD4-208ENST00000563220 ZNF853P0CG23 659 aa23.41■■□□□ 1.34
COMMD4-208ENST00000563220 LAS1LQ9Y4W2 734 aaKnown RBP23.41■■□□□ 1.34
COMMD4-208ENST00000563220 RARSP54136 660 aaKnown RBP23.41■■□□□ 1.34
COMMD4-208ENST00000563220 IFT57Q9NWB7 429 aa23.4■■□□□ 1.34
COMMD4-208ENST00000563220 DLG5Q8TDM6 1919 aa23.4■■□□□ 1.34
COMMD4-208ENST00000563220 MCM10Q7L590 875 aa23.39■■□□□ 1.34
COMMD4-208ENST00000563220 GAS2L2Q8NHY3 880 aa23.39■■□□□ 1.34
COMMD4-208ENST00000563220 C20orf194Q5TEA3 1177 aa23.39■■□□□ 1.33
COMMD4-208ENST00000563220 GNAI1P63096 354 aa23.38■■□□□ 1.33
COMMD4-208ENST00000563220 CHRNA2Q15822 529 aa23.38■■□□□ 1.33
COMMD4-208ENST00000563220 EXOC6Q8TAG9 804 aa23.38■■□□□ 1.33
COMMD4-208ENST00000563220 ERBB3P21860 1342 aa23.37■■□□□ 1.33
COMMD4-208ENST00000563220 CFAP44Q96MT7 982 aa23.37■■□□□ 1.33
COMMD4-208ENST00000563220 KIAA0232Q92628 1395 aa23.37■■□□□ 1.33
COMMD4-208ENST00000563220 CT47B1P0C2W7 299 aaPredicted RBP23.36■■□□□ 1.33
COMMD4-208ENST00000563220 CPDO75976 1380 aa23.36■■□□□ 1.33
COMMD4-208ENST00000563220 CRYBG1Q9Y4K1 1723 aa23.36■■□□□ 1.33
COMMD4-208ENST00000563220 NHSL1Q5SYE7 1610 aa23.36■■□□□ 1.33
COMMD4-208ENST00000563220 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.36■■□□□ 1.33
COMMD4-208ENST00000563220 MBIPQ9NS73 344 aa23.36■■□□□ 1.33
COMMD4-208ENST00000563220 NCAPD2Q15021 1401 aa23.35■■□□□ 1.33
COMMD4-208ENST00000563220 B4GALNT3Q6L9W6 998 aa23.33■■□□□ 1.33
COMMD4-208ENST00000563220 RTF1Q92541 710 aaKnown RBP23.33■■□□□ 1.33
COMMD4-208ENST00000563220 CRBNQ96SW2 442 aa23.33■■□□□ 1.33
COMMD4-208ENST00000563220 COL18A1P39060 1754 aa23.33■■□□□ 1.33
COMMD4-208ENST00000563220 BCL2L13Q9BXK5 485 aa23.32■■□□□ 1.32
COMMD4-208ENST00000563220 RGPD2P0DJD1 1756 aa23.32■■□□□ 1.32
COMMD4-208ENST00000563220 HTATSF1O43719 755 aaKnown RBP23.32■■□□□ 1.32
COMMD4-208ENST00000563220 CRB1P82279 1406 aa23.31■■□□□ 1.32
COMMD4-208ENST00000563220 GNAT3A8MTJ3 354 aa23.31■■□□□ 1.32
COMMD4-208ENST00000563220 RGPD5Q99666 1765 aa23.3■■□□□ 1.32
COMMD4-208ENST00000563220 CHL1O00533 1208 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms