RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 CCDC125Q86Z20 511 aa6.99□□□□□ -1.29
VPS35-203ENST00000562420 SLC10A4Q96EP9 437 aa6.99□□□□□ -1.29
VPS35-203ENST00000562420 ADH1CP00326 375 aa6.98□□□□□ -1.29
VPS35-203ENST00000562420 NBPF20Q3BBV1 942 aa6.98□□□□□ -1.29
VPS35-203ENST00000562420 CARD14Q9BXL6 1004 aa6.98□□□□□ -1.29
VPS35-203ENST00000562420 ABL2P42684 1182 aa6.97□□□□□ -1.29
VPS35-203ENST00000562420 NR5A1Q13285 461 aa6.97□□□□□ -1.29
VPS35-203ENST00000562420 SEPT12Q8IYM1 358 aa6.97□□□□□ -1.29
VPS35-203ENST00000562420 POM121Q96HA1 1249 aa6.97□□□□□ -1.29
VPS35-203ENST00000562420 STK17AQ9UEE5 414 aa6.97□□□□□ -1.29
VPS35-203ENST00000562420 TLL2Q9Y6L7 1015 aa6.97□□□□□ -1.29
VPS35-203ENST00000562420 SMPD1P17405 629 aa6.96□□□□□ -1.3
VPS35-203ENST00000562420 EIF4G2P78344 907 aaKnown RBP eCLIP6.96□□□□□ -1.3
VPS35-203ENST00000562420 NFX1Q12986 1120 aaKnown RBP6.96□□□□□ -1.3
VPS35-203ENST00000562420 CTC1Q2NKJ3 1217 aa6.96□□□□□ -1.3
VPS35-203ENST00000562420 PROSER2Q86WR7 435 aaPredicted RBP6.96□□□□□ -1.3
VPS35-203ENST00000562420 FNBP4Q8N3X1 1017 aaPredicted RBP6.96□□□□□ -1.3
VPS35-203ENST00000562420 LOC100996750A0A140TA64 210 aa6.95□□□□□ -1.3
VPS35-203ENST00000562420 ESPNB1AK53 854 aa6.95□□□□□ -1.3
VPS35-203ENST00000562420 ALDH1A1P00352 501 aa6.95□□□□□ -1.3
VPS35-203ENST00000562420 SMCPP49901 116 aaPredicted RBP6.95□□□□□ -1.3
VPS35-203ENST00000562420 DZIP3Q86Y13 1208 aaKnown RBP6.95□□□□□ -1.3
VPS35-203ENST00000562420 KRTAP4-6Q9BYQ5 205 aa6.95□□□□□ -1.3
VPS35-203ENST00000562420 J3QL48 77 aa6.94□□□□□ -1.3
VPS35-203ENST00000562420 SNRPBP14678 240 aaKnown RBP6.94□□□□□ -1.3
VPS35-203ENST00000562420 GRM5P41594 1212 aa6.94□□□□□ -1.3
VPS35-203ENST00000562420 VASH1Q7L8A9 365 aaPredicted RBP6.94□□□□□ -1.3
VPS35-203ENST00000562420 TRIM52Q96A61 297 aa6.94□□□□□ -1.3
VPS35-203ENST00000562420 WASF2Q9Y6W5 498 aa6.94□□□□□ -1.3
VPS35-203ENST00000562420 DHX9Q08211 1270 aaKnown RBP6.93□□□□□ -1.3
VPS35-203ENST00000562420 CLUAP1Q96AJ1 413 aa6.93□□□□□ -1.3
VPS35-203ENST00000562420 KCTD15Q96SI1 283 aaPredicted RBP6.93□□□□□ -1.3
VPS35-203ENST00000562420 ATP13A2Q9NQ11 1180 aa6.93□□□□□ -1.3
VPS35-203ENST00000562420 NNTQ13423 1086 aa6.92□□□□□ -1.3
VPS35-203ENST00000562420 RNF20Q5VTR2 975 aa6.92□□□□□ -1.3
VPS35-203ENST00000562420 PCDHB9Q9Y5E1 797 aa6.92□□□□□ -1.3
VPS35-203ENST00000562420 FSHRP23945 695 aa6.91□□□□□ -1.3
VPS35-203ENST00000562420 VAC14Q08AM6 782 aa6.91□□□□□ -1.3
VPS35-203ENST00000562420 LCE2CQ5TA81 110 aa6.91□□□□□ -1.3
VPS35-203ENST00000562420 CCDC116Q8IYX3 515 aa6.91□□□□□ -1.3
VPS35-203ENST00000562420 HPS1Q92902 700 aa6.91□□□□□ -1.3
VPS35-203ENST00000562420 EMILIN1Q9Y6C2 1016 aa6.91□□□□□ -1.3
VPS35-203ENST00000562420 ARID5BQ14865 1188 aa6.9□□□□□ -1.3
VPS35-203ENST00000562420 INTS6LQ5JSJ4 861 aaKnown RBP6.9□□□□□ -1.3
VPS35-203ENST00000562420 KLF16Q9BXK1 252 aaPredicted RBP6.9□□□□□ -1.3
VPS35-203ENST00000562420 ZMYND15Q9H091 742 aa6.9□□□□□ -1.3
VPS35-203ENST00000562420 ALG2Q9H553 416 aa6.9□□□□□ -1.3
VPS35-203ENST00000562420 NR3C2P08235 984 aa6.89□□□□□ -1.31
VPS35-203ENST00000562420 CEP126Q9P2H0 1117 aa6.89□□□□□ -1.31
VPS35-203ENST00000562420 CHIC2Q9UKJ5 165 aa6.89□□□□□ -1.31
VPS35-203ENST00000562420 TERTO14746 1132 aaKnown RBP6.88□□□□□ -1.31
VPS35-203ENST00000562420 WIPF1O43516 503 aa6.88□□□□□ -1.31
VPS35-203ENST00000562420 TRAK2O60296 914 aa6.88□□□□□ -1.31
VPS35-203ENST00000562420 INSM1Q01101 510 aaPredicted RBP6.88□□□□□ -1.31
VPS35-203ENST00000562420 SEMA3FQ13275 785 aa6.88□□□□□ -1.31
VPS35-203ENST00000562420 NFATC2IPQ8NCF5 419 aa6.88□□□□□ -1.31
VPS35-203ENST00000562420 PGPEP1Q9NXJ5 209 aa6.88□□□□□ -1.31
VPS35-203ENST00000562420 TIMP2P16035 220 aa6.87□□□□□ -1.31
VPS35-203ENST00000562420 PHTF2Q8N3S3 785 aa6.87□□□□□ -1.31
VPS35-203ENST00000562420 TRIM47Q96LD4 638 aa6.87□□□□□ -1.31
VPS35-203ENST00000562420 GIGYF1O75420 1035 aaPredicted RBP6.86□□□□□ -1.31
VPS35-203ENST00000562420 PPP1R26Q5T8A7 1209 aaPredicted RBP6.86□□□□□ -1.31
VPS35-203ENST00000562420 SENP2Q9HC62 589 aa6.86□□□□□ -1.31
VPS35-203ENST00000562420 POM121CA8CG34 1229 aa6.85□□□□□ -1.31
VPS35-203ENST00000562420 WDR4P57081 412 aaKnown RBP6.85□□□□□ -1.31
VPS35-203ENST00000562420 MAP7D1Q3KQU3 841 aa6.85□□□□□ -1.31
VPS35-203ENST00000562420 SLFNL1Q499Z3 407 aa6.85□□□□□ -1.31
VPS35-203ENST00000562420 ERVH48-1M5A8F1 160 aa6.84□□□□□ -1.31
VPS35-203ENST00000562420 CAPN5O15484 640 aaPredicted RBP6.84□□□□□ -1.31
VPS35-203ENST00000562420 LZTS3O60299 673 aaPredicted RBP6.84□□□□□ -1.31
VPS35-203ENST00000562420 ZIC2O95409 532 aaPredicted RBP6.84□□□□□ -1.31
VPS35-203ENST00000562420 Q6ZVU0 165 aa6.84□□□□□ -1.31
VPS35-203ENST00000562420 C14orf37Q86TY3 774 aa6.84□□□□□ -1.31
VPS35-203ENST00000562420 MEIOBQ8N635 442 aa6.84□□□□□ -1.31
VPS35-203ENST00000562420 ADAMTS19Q8TE59 1207 aa6.84□□□□□ -1.31
VPS35-203ENST00000562420 ITPKCQ96DU7 683 aa6.84□□□□□ -1.31
VPS35-203ENST00000562420 ERVK-9P63128 1117 aa6.83□□□□□ -1.32
VPS35-203ENST00000562420 RNF135Q8IUD6 432 aa6.83□□□□□ -1.32
VPS35-203ENST00000562420 GLMNQ92990 594 aa6.83□□□□□ -1.32
VPS35-203ENST00000562420 LILRA1O75019 489 aa6.81□□□□□ -1.32
VPS35-203ENST00000562420 BMP1P13497 986 aa6.81□□□□□ -1.32
VPS35-203ENST00000562420 HDGFL1Q5TGJ6 251 aa6.81□□□□□ -1.32
VPS35-203ENST00000562420 CC2D2BQ6DHV5 1058 aa6.81□□□□□ -1.32
VPS35-203ENST00000562420 ZNF784Q8NCA9 323 aaPredicted RBP6.81□□□□□ -1.32
VPS35-203ENST00000562420 KIFC2Q96AC6 838 aa6.81□□□□□ -1.32
VPS35-203ENST00000562420 SIRT1Q96EB6 747 aa6.81□□□□□ -1.32
VPS35-203ENST00000562420 CCDC85AQ96PX6 553 aaPredicted RBP6.81□□□□□ -1.32
VPS35-203ENST00000562420 ZFAND3Q9H8U3 227 aa6.81□□□□□ -1.32
VPS35-203ENST00000562420 VEGFBP49765 207 aa6.8□□□□□ -1.32
VPS35-203ENST00000562420 PLEKHM2Q8IWE5 1019 aa6.8□□□□□ -1.32
VPS35-203ENST00000562420 PLPP7Q8NBV4 271 aa6.8□□□□□ -1.32
VPS35-203ENST00000562420 UCN2Q96RP3 112 aa6.8□□□□□ -1.32
VPS35-203ENST00000562420 DOLKQ9UPQ8 538 aa6.8□□□□□ -1.32
VPS35-203ENST00000562420 PCDHB11Q9Y5F2 797 aa6.8□□□□□ -1.32
VPS35-203ENST00000562420 ADH1AP07327 375 aa6.79□□□□□ -1.32
VPS35-203ENST00000562420 CALR3Q96L12 384 aaKnown RBP6.79□□□□□ -1.32
VPS35-203ENST00000562420 TSEN34Q9BSV6 310 aaKnown RBP6.79□□□□□ -1.32
VPS35-203ENST00000562420 TMPRSS4Q9NRS4 437 aa6.79□□□□□ -1.32
VPS35-203ENST00000562420 FAM181BA6NEQ2 426 aa6.78□□□□□ -1.32
VPS35-203ENST00000562420 ATP9BO43861 1147 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms