RNA–Protein interactions for RNA: ENST00000561036.1

HDDC3-206, Transcript of HD domain containing 3, humanhuman

TSL 3

Gene HDDC3, Length 457 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-206ENST00000561036 RRP7AQ9Y3A4 280 aaKnown RBP22.42■■□□□ 1.18
HDDC3-206ENST00000561036 RGPD1P0DJD0 1748 aa22.4■■□□□ 1.18
HDDC3-206ENST00000561036 NEUROD2Q15784 382 aa22.4■■□□□ 1.18
HDDC3-206ENST00000561036 HSP90AB2PQ58FF8 381 aa22.4■■□□□ 1.18
HDDC3-206ENST00000561036 NUTM2GQ5VZR2 741 aa22.4■■□□□ 1.18
HDDC3-206ENST00000561036 SLIT3O75094 1523 aa22.4■■□□□ 1.18
HDDC3-206ENST00000561036 NFAT5O94916 1531 aa22.4■■□□□ 1.18
HDDC3-206ENST00000561036 ARHGEF10O15013 1369 aa22.39■■□□□ 1.18
HDDC3-206ENST00000561036 NPHP3Q7Z494 1330 aa22.39■■□□□ 1.18
HDDC3-206ENST00000561036 SOX12O15370 315 aa22.39■■□□□ 1.17
HDDC3-206ENST00000561036 USP19O94966 1318 aa22.38■■□□□ 1.17
HDDC3-206ENST00000561036 IL16Q14005 1332 aa22.38■■□□□ 1.17
HDDC3-206ENST00000561036 NFE2L2Q16236 605 aa22.38■■□□□ 1.17
HDDC3-206ENST00000561036 HMOX1P09601 288 aa22.37■■□□□ 1.17
HDDC3-206ENST00000561036 SPINK5Q9NQ38 1064 aaPredicted RBP22.37■■□□□ 1.17
HDDC3-206ENST00000561036 PHRF1Q9P1Y6 1649 aaKnown RBP22.37■■□□□ 1.17
HDDC3-206ENST00000561036 HOXC9P31274 260 aa22.36■■□□□ 1.17
HDDC3-206ENST00000561036 RIPK4P57078 832 aa22.36■■□□□ 1.17
HDDC3-206ENST00000561036 MYH16Q9H6N6 1097 aa22.36■■□□□ 1.17
HDDC3-206ENST00000561036 TRIM35Q9UPQ4 493 aa22.36■■□□□ 1.17
HDDC3-206ENST00000561036 ALS2Q96Q42 1657 aa22.36■■□□□ 1.17
HDDC3-206ENST00000561036 RRP1P56182 461 aaKnown RBP22.35■■□□□ 1.17
HDDC3-206ENST00000561036 IP6K1Q92551 441 aa22.34■■□□□ 1.17
HDDC3-206ENST00000561036 XPCQ01831 940 aaPredicted RBP22.33■■□□□ 1.17
HDDC3-206ENST00000561036 LMOD3Q0VAK6 560 aa22.33■■□□□ 1.17
HDDC3-206ENST00000561036 SULT6B1Q6IMI4 303 aa22.33■■□□□ 1.17
HDDC3-206ENST00000561036 PHACTR3Q96KR7 559 aa22.33■■□□□ 1.17
HDDC3-206ENST00000561036 CALD1Q05682 793 aaKnown RBP22.32■■□□□ 1.16
HDDC3-206ENST00000561036 KDRP35968 1356 aa22.32■■□□□ 1.16
HDDC3-206ENST00000561036 LTN1O94822 1766 aa22.32■■□□□ 1.16
HDDC3-206ENST00000561036 IGSF1Q8N6C5 1336 aa22.31■■□□□ 1.16
HDDC3-206ENST00000561036 PXDNQ92626 1479 aa22.31■■□□□ 1.16
HDDC3-206ENST00000561036 GCP02774 474 aa22.31■■□□□ 1.16
HDDC3-206ENST00000561036 IRX6P78412 446 aaPredicted RBP22.31■■□□□ 1.16
HDDC3-206ENST00000561036 SLAIN2Q9P270 581 aa22.31■■□□□ 1.16
HDDC3-206ENST00000561036 BRINP3Q76B58 766 aa22.3■■□□□ 1.16
HDDC3-206ENST00000561036 TNS3Q68CZ2 1445 aa22.3■■□□□ 1.16
HDDC3-206ENST00000561036 ARHGEF25Q86VW2 580 aa22.29■■□□□ 1.16
HDDC3-206ENST00000561036 CT47B1P0C2W7 299 aaPredicted RBP22.28■■□□□ 1.16
HDDC3-206ENST00000561036 LMOD2Q6P5Q4 547 aa22.28■■□□□ 1.16
HDDC3-206ENST00000561036 AEBP1Q8IUX7 1158 aa22.28■■□□□ 1.16
HDDC3-206ENST00000561036 PPP4R2Q9NY27 417 aa22.28■■□□□ 1.16
HDDC3-206ENST00000561036 EYA1Q99502 592 aa22.27■■□□□ 1.16
HDDC3-206ENST00000561036 SPATA31A3Q5VYP0 1347 aa22.27■■□□□ 1.16
HDDC3-206ENST00000561036 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.26■■□□□ 1.15
HDDC3-206ENST00000561036 MED1Q15648 1581 aaPredicted RBP22.25■■□□□ 1.15
HDDC3-206ENST00000561036 SOS2Q07890 1332 aaPredicted RBP22.23■■□□□ 1.15
HDDC3-206ENST00000561036 ABCC6O95255 1503 aa22.22■■□□□ 1.15
HDDC3-206ENST00000561036 FANCIQ9NVI1 1328 aa22.22■■□□□ 1.15
HDDC3-206ENST00000561036 DDX17Q92841 729 aaKnown RBP22.21■■□□□ 1.15
HDDC3-206ENST00000561036 IFT57Q9NWB7 429 aa22.21■■□□□ 1.15
HDDC3-206ENST00000561036 DLG5Q8TDM6 1919 aa22.21■■□□□ 1.15
HDDC3-206ENST00000561036 GNAI1P63096 354 aa22.2■■□□□ 1.14
HDDC3-206ENST00000561036 GAS2L2Q8NHY3 880 aa22.2■■□□□ 1.14
HDDC3-206ENST00000561036 PELP1Q8IZL8 1130 aaKnown RBP22.19■■□□□ 1.14
HDDC3-206ENST00000561036 LTBP4Q8N2S1 1624 aa22.18■■□□□ 1.14
HDDC3-206ENST00000561036 HTATSF1O43719 755 aaKnown RBP22.18■■□□□ 1.14
HDDC3-206ENST00000561036 LTV1Q96GA3 475 aaPredicted RBP22.18■■□□□ 1.14
HDDC3-206ENST00000561036 CRYBG1Q9Y4K1 1723 aa22.17■■□□□ 1.14
HDDC3-206ENST00000561036 NHSL1Q5SYE7 1610 aa22.17■■□□□ 1.14
HDDC3-206ENST00000561036 NCAPD2Q15021 1401 aa22.17■■□□□ 1.14
HDDC3-206ENST00000561036 ZNF853P0CG23 659 aa22.17■■□□□ 1.14
HDDC3-206ENST00000561036 CPDO75976 1380 aa22.16■■□□□ 1.14
HDDC3-206ENST00000561036 RARSP54136 660 aaKnown RBP22.16■■□□□ 1.14
HDDC3-206ENST00000561036 ZBTB7CA1YPR0 619 aa22.15■■□□□ 1.14
HDDC3-206ENST00000561036 TSR2Q969E8 191 aaKnown RBP22.15■■□□□ 1.14
HDDC3-206ENST00000561036 ZNF428Q96B54 188 aa22.15■■□□□ 1.14
HDDC3-206ENST00000561036 CFAP44Q96MT7 982 aa22.15■■□□□ 1.14
HDDC3-206ENST00000561036 EXOSC9Q06265 439 aaKnown RBP22.14■■□□□ 1.13
HDDC3-206ENST00000561036 MTHFSDQ2M296 383 aaKnown RBP22.14■■□□□ 1.13
HDDC3-206ENST00000561036 PLIN1O60240 522 aa22.13■■□□□ 1.13
HDDC3-206ENST00000561036 NBPF6Q5VWK0 638 aa22.13■■□□□ 1.13
HDDC3-206ENST00000561036 ANKRD24Q8TF21 1146 aa22.13■■□□□ 1.13
HDDC3-206ENST00000561036 NBPF4Q96M43 638 aa22.13■■□□□ 1.13
HDDC3-206ENST00000561036 CAMTA1Q9Y6Y1 1673 aa22.13■■□□□ 1.13
HDDC3-206ENST00000561036 ZC3H6P61129 1189 aaKnown RBP22.12■■□□□ 1.13
HDDC3-206ENST00000561036 BCAR3O75815 825 aa22.11■■□□□ 1.13
HDDC3-206ENST00000561036 RTF1Q92541 710 aaKnown RBP22.11■■□□□ 1.13
HDDC3-206ENST00000561036 THUMPD2Q9BTF0 503 aaKnown RBP22.11■■□□□ 1.13
HDDC3-206ENST00000561036 COL18A1P39060 1754 aa22.11■■□□□ 1.13
HDDC3-206ENST00000561036 PDE3AQ14432 1141 aa22.1■■□□□ 1.13
HDDC3-206ENST00000561036 FAM83GA6ND36 823 aa22.09■■□□□ 1.13
HDDC3-206ENST00000561036 EXOC6Q8TAG9 804 aa22.09■■□□□ 1.13
HDDC3-206ENST00000561036 AXIN2Q9Y2T1 843 aa22.09■■□□□ 1.13
HDDC3-206ENST00000561036 PLEKHG2Q9H7P9 1386 aa22.09■■□□□ 1.13
HDDC3-206ENST00000561036 ERBB3P21860 1342 aa22.08■■□□□ 1.13
HDDC3-206ENST00000561036 LMO7Q8WWI1 1683 aa22.08■■□□□ 1.13
HDDC3-206ENST00000561036 PLEKHG5O94827 1062 aa22.08■■□□□ 1.13
HDDC3-206ENST00000561036 MBIPQ9NS73 344 aa22.08■■□□□ 1.13
HDDC3-206ENST00000561036 LAS1LQ9Y4W2 734 aaKnown RBP22.08■■□□□ 1.13
HDDC3-206ENST00000561036 CRB1P82279 1406 aa22.07■■□□□ 1.12
HDDC3-206ENST00000561036 GNAT3A8MTJ3 354 aa22.07■■□□□ 1.12
HDDC3-206ENST00000561036 CHL1O00533 1208 aa22.07■■□□□ 1.12
HDDC3-206ENST00000561036 ALDH1L2Q3SY69 923 aa22.07■■□□□ 1.12
HDDC3-206ENST00000561036 AMOTQ4VCS5 1084 aa22.07■■□□□ 1.12
HDDC3-206ENST00000561036 CABLES1Q8TDN4 633 aa22.07■■□□□ 1.12
HDDC3-206ENST00000561036 CRBNQ96SW2 442 aa22.07■■□□□ 1.12
HDDC3-206ENST00000561036 MAP3K5Q99683 1374 aa22.07■■□□□ 1.12
HDDC3-206ENST00000561036 FAM208AQ9UK61 1670 aaKnown RBP22.07■■□□□ 1.12
HDDC3-206ENST00000561036 DCTN1Q14203 1278 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms